CircRNA Information

General Information
circRNA Basic Information
CircID chr8:9778808|9779071
Strand -
CircType exon
Host Gene ENSG00000173273.14;
Algorism CIRI2;
Sequence AGCTGTGATTTTTAGTTAAGTAAAAGAGTTAATATGATATAGATATGGAAAGCTTTATGGCTTCATTAAAAAGATAAACCACTACCTAACTGTGGTTGTATGTTGTTTCCATCATACTAACTAGATGAATGGATGCGCCAGTTTTCATCTTGGTCCTTACACTTGAGAAGTTAAACTGTGGTTCAGTATTTAAACTGCCAGTGTTATACGTCTCATGCTCTGTGTGCCAGGTGAAGGTACTGTGTAAGGAAGACATTTGCGGTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr8:9778808|9779071 hsa-miR-34a-5p 0 0 1
chr8:9778808|9779071 hsa-miR-34a-3p 0 0 1
chr8:9778808|9779071 hsa-miR-200b-5p 0 0 1
chr8:9778808|9779071 hsa-miR-200b-3p 0 0 1
chr8:9778808|9779071 hsa-miR-141-5p 0 0 1
chr8:9778808|9779071 hsa-miR-141-3p 0 0 1
chr8:9778808|9779071 hsa-miR-320a-5p 0 0 1
chr8:9778808|9779071 hsa-miR-320a-3p 0 0 1
chr8:9778808|9779071 hsa-miR-200c-5p 0 0 1
chr8:9778808|9779071 hsa-miR-200c-3p 0 0 1
chr8:9778808|9779071 hsa-miR-200a-5p 0 0 1
chr8:9778808|9779071 hsa-miR-200a-3p 0 0 1
chr8:9778808|9779071 hsa-miR-196b-5p 0 0 1
chr8:9778808|9779071 hsa-miR-196b-3p 0 0 1
chr8:9778808|9779071 hsa-miR-429 0 0 1
chr8:9778808|9779071 hsa-miR-449a 0 0 1
chr8:9778808|9779071 hsa-miR-412-5p 0 0 1
chr8:9778808|9779071 hsa-miR-412-3p 0 0 1
chr8:9778808|9779071 hsa-miR-487a-5p 0 0 1
chr8:9778808|9779071 hsa-miR-487a-3p 0 0 1
chr8:9778808|9779071 hsa-miR-570-5p 0 0 1
chr8:9778808|9779071 hsa-miR-570-3p 0 0 1
chr8:9778808|9779071 hsa-miR-587 0 0 1
chr8:9778808|9779071 hsa-miR-618 0 0 1
chr8:9778808|9779071 hsa-miR-449b-5p 0 0 1
chr8:9778808|9779071 hsa-miR-449b-3p 0 0 1
chr8:9778808|9779071 hsa-miR-548e-5p 0 0 1
chr8:9778808|9779071 hsa-miR-548e-3p 0 0 1
chr8:9778808|9779071 hsa-miR-1272 0 0 1
chr8:9778808|9779071 hsa-miR-1279 0 0 1
chr8:9778808|9779071 hsa-miR-513c-5p 0 0 1
chr8:9778808|9779071 hsa-miR-513c-3p 0 0 1
chr8:9778808|9779071 hsa-miR-1322 0 0 1
chr8:9778808|9779071 hsa-miR-140-5p 0 0 1
chr8:9778808|9779071 hsa-miR-139-3p 0 0 1
chr8:9778808|9779071 hsa-miR-331-5p 0 0 1
chr8:9778808|9779071 hsa-miR-140-3p 0 0 1
chr8:9778808|9779071 hsa-miR-299-5p 0 0 1
chr8:9778808|9779071 hsa-miR-320b 0 0 1
chr8:9778808|9779071 hsa-miR-320c 0 0 1
chr8:9778808|9779071 hsa-miR-320d 0 0 1
chr8:9778808|9779071 hsa-miR-34c-5p 0 0 1
chr8:9778808|9779071 hsa-miR-548a-3p 0 0 1
chr8:9778808|9779071 hsa-miR-548c-3p 0 0 1
chr8:9778808|9779071 hsa-miR-548f 0 0 1
chr8:9778808|9779071 hsa-miR-196a 0 0 1
chr8:9778808|9779071 hsa-miR-101 0 0 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr8:9778808|9779071
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MDAPVFILVLTLEKLNCGSVFKLPVLYVSCSVCQVKVLCKEDICG
Nucleotide Sequence ATGGATGCGCCAGTTTTCATCTTGGTCCTTACACTTGAGAAGTTAAACTGTGGTTCAGTATTTAAACTGCCAGTGTTATACGTCTCATGCTCTGTGTGCCAGGTGAAGGTACTGTGTAAGGAAGACATTTGCGGT
CircID chr8:9778808|9779071
ORF Type ORF2
Protein Length 56
Nucleotide Length 171
Protein Sequence MSSLHSTFTWHTEHETYNTGSLNTEPQFNFSSVRTKMKTGASIHLVSMMETTYNHS
Nucleotide Sequence ATGTCTTCCTTACACAGTACCTTCACCTGGCACACAGAGCATGAGACGTATAACACTGGCAGTTTAAATACTGAACCACAGTTTAACTTCTCAAGTGTAAGGACCAAGATGAAAACTGGCGCATCCATTCATCTAGTTAGTATGATGGAAACAACATACAACCACAGTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab