CircRNA Information

General Information
circRNA Basic Information
CircID chr9:101476948|101477116
Strand +
CircType exon
Host Gene ENSG00000165152.7;
Algorism CIRI2;
Sequence CAGACATGAACAAAAGTTGACCTCATGAGCACTTCAACCTCTCCAGCTGCCATGCTCCTCCGGAGGCTGCGGCGACTCTCCTGGGGCAGCACTGCTGTCCAGCTCTTCATCCTAACAGTGGTGACGTTTGGCCTGCTGGCCCCCCTGGCCTGTCACCGACTTCTACACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:101476948|101477116 hsa-miR-197-5p 0 0 1
chr9:101476948|101477116 hsa-miR-197-3p 0 0 1
chr9:101476948|101477116 hsa-miR-214-5p 0 0 1
chr9:101476948|101477116 hsa-miR-214-3p 0 0 1
chr9:101476948|101477116 hsa-miR-185-5p 0 0 1
chr9:101476948|101477116 hsa-miR-185-3p 0 0 1
chr9:101476948|101477116 hsa-miR-302a-5p 0 0 1
chr9:101476948|101477116 hsa-miR-302a-3p 0 0 1
chr9:101476948|101477116 hsa-miR-302b-5p 0 0 1
chr9:101476948|101477116 hsa-miR-302b-3p 0 0 1
chr9:101476948|101477116 hsa-miR-302c-5p 0 0 1
chr9:101476948|101477116 hsa-miR-302c-3p 0 0 1
chr9:101476948|101477116 hsa-miR-302d-5p 0 0 1
chr9:101476948|101477116 hsa-miR-302d-3p 0 0 1
chr9:101476948|101477116 hsa-miR-372-5p 0 0 1
chr9:101476948|101477116 hsa-miR-372-3p 0 0 1
chr9:101476948|101477116 hsa-miR-373-5p 0 0 1
chr9:101476948|101477116 hsa-miR-373-3p 0 0 1
chr9:101476948|101477116 hsa-miR-375-5p 0 0 1
chr9:101476948|101477116 hsa-miR-375-3p 0 0 1
chr9:101476948|101477116 hsa-miR-520e-5p 0 0 1
chr9:101476948|101477116 hsa-miR-520e-3p 0 0 1
chr9:101476948|101477116 hsa-miR-520b-5p 0 0 1
chr9:101476948|101477116 hsa-miR-520b-3p 0 0 1
chr9:101476948|101477116 hsa-miR-573 0 0 1
chr9:101476948|101477116 hsa-miR-651-5p 0 0 1
chr9:101476948|101477116 hsa-miR-651-3p 0 0 1
chr9:101476948|101477116 hsa-miR-765 0 1 1
chr9:101476948|101477116 hsa-miR-665 0 0 1
chr9:101476948|101477116 hsa-miR-1203 0 0 1
chr9:101476948|101477116 hsa-miR-1206 0 0 1
chr9:101476948|101477116 hsa-miR-1208 0 0 1
chr9:101476948|101477116 hsa-miR-1258 0 1 1
chr9:101476948|101477116 hsa-miR-1265 0 0 1
chr9:101476948|101477116 hsa-miR-302e 0 0 1
chr9:101476948|101477116 hsa-miR-512-3p 0 1 1
chr9:101476948|101477116 hsa-miR-885-3p 0 0 1
chr9:101476948|101477116 hsa-miR-1207-3p 0 0 1
chr9:101476948|101477116 hsa-miR-654-3p 0 0 1
chr9:101476948|101477116 hsa-miR-324-3p 0 0 1
chr9:101476948|101477116 hsa-miR-520d-3p 0 0 1
chr9:101476948|101477116 hsa-miR-520a-3p 0 0 1
chr9:101476948|101477116 hsa-miR-520c-3p 0 0 1
chr9:101476948|101477116 hsa-miR-542-3p 0 0 1
chr9:101476948|101477116 hsa-miR-220b 0 0 1
chr9:101476948|101477116 hsa-miR-761 0 1 0
chr9:101476948|101477116 hsa-miR-1294 1 0 0
chr9:101476948|101477116 hsa-miR-3197 1 0 0
chr9:101476948|101477116 hsa-miR-3135b 0 1 0
chr9:101476948|101477116 hsa-miR-4487 0 1 0
chr9:101476948|101477116 hsa-miR-4498 0 1 0
chr9:101476948|101477116 hsa-miR-4525 1 0 0
chr9:101476948|101477116 hsa-miR-4526 0 1 0
chr9:101476948|101477116 hsa-miR-4530 0 1 0
chr9:101476948|101477116 hsa-miR-6076 1 0 0
chr9:101476948|101477116 hsa-miR-6077 0 1 0
chr9:101476948|101477116 hsa-miR-7150 1 0 0
chr9:101476948|101477116 hsa-miR-9901 1 0 0
chr9:101476948|101477116 hsa-miR-6825-5p 1 0 0
chr9:101476948|101477116 hsa-miR-6894-5p 1 1 0
chr9:101476948|101477116 hsa-miR-1972 0 1 0
chr9:101476948|101477116 hsa-miR-4687-3p 1 0 0
chr9:101476948|101477116 hsa-miR-766-5p 1 0 0
chr9:101476948|101477116 hsa-miR-139-3p 1 0 0
chr9:101476948|101477116 hsa-miR-6089 1 0 0
chr9:101476948|101477116 hsa-miR-3190-3p 1 0 0
chr9:101476948|101477116 hsa-miR-6798-5p 0 1 0
chr9:101476948|101477116 hsa-miR-6782-5p 1 0 0
chr9:101476948|101477116 hsa-miR-4640-5p 1 1 0
chr9:101476948|101477116 hsa-miR-4638-3p 0 1 0
chr9:101476948|101477116 hsa-miR-6800-5p 1 0 0
chr9:101476948|101477116 hsa-miR-3177-3p 1 0 0
chr9:101476948|101477116 hsa-miR-4645-3p 0 1 0
chr9:101476948|101477116 hsa-miR-6870-5p 1 0 0
chr9:101476948|101477116 hsa-miR-6775-5p 1 0 0
chr9:101476948|101477116 hsa-miR-1343-5p 1 0 0
chr9:101476948|101477116 hsa-miR-6726-5p 1 0 0
chr9:101476948|101477116 hsa-miR-6743-5p 1 0 0
chr9:101476948|101477116 hsa-miR-11181-3p 0 1 0
chr9:101476948|101477116 hsa-miR-6763-5p 1 0 0
chr9:101476948|101477116 hsa-miR-4728-5p 1 0 0
chr9:101476948|101477116 hsa-miR-328-5p 0 1 0
chr9:101476948|101477116 hsa-miR-4726-5p 0 1 0
chr9:101476948|101477116 hsa-miR-6729-5p 1 0 0
chr9:101476948|101477116 hsa-miR-6738-5p 1 1 0
chr9:101476948|101477116 hsa-miR-6777-5p 1 0 0
chr9:101476948|101477116 hsa-miR-6795-5p 1 0 0
chr9:101476948|101477116 hsa-miR-6846-5p 1 0 0
chr9:101476948|101477116 hsa-miR-6848-5p 1 0 0
chr9:101476948|101477116 hsa-miR-6889-5p 1 0 0
chr9:101476948|101477116 hsa-miR-6885-5p 0 1 0
chr9:101476948|101477116 hsa-miR-939-5p 1 0 0
chr9:101476948|101477116 hsa-miR-6837-5p 1 0 0
chr9:101476948|101477116 hsa-miR-3619-5p 0 1 0
chr9:101476948|101477116 hsa-miR-3616-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:101476948|101477116
ORF Type ORF1
Protein Length 48
Nucleotide Length 144
Protein Sequence MSTSTSPAAMLLRRLRRLSWGSTAVQLFILTVVTFGLLAPLACHRLLH
Nucleotide Sequence ATGAGCACTTCAACCTCTCCAGCTGCCATGCTCCTCCGGAGGCTGCGGCGACTCTCCTGGGGCAGCACTGCTGTCCAGCTCTTCATCCTAACAGTGGTGACGTTTGGCCTGCTGGCCCCCCTGGCCTGTCACCGACTTCTACAC
CircID chr9:101476948|101477116
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MGQHCCPALHPNSGDVWPAGPPGLSPTST
Nucleotide Sequence CTGGGGCAGCACTGCTGTCCAGCTCTTCATCCTAACAGTGGTGACGTTTGGCCTGCTGGCCCCCCTGGCCTGTCACCGACTTCTACA
CircID chr9:101476948|101477116
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MKSWTAVLPQESRRSLRRSMAAGEVEVLMRSTFVHV
Nucleotide Sequence ATGAAGAGCTGGACAGCAGTGCTGCCCCAGGAGAGTCGCCGCAGCCTCCGGAGGAGCATGGCAGCTGGAGAGGTTGAAGTGCTCATGAGGTCAACTTTTGTTCATGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab