CircRNA Information

General Information
circRNA Basic Information
CircID chr9:105615182|105615407
Strand +
CircType exon
Host Gene ENSG00000106692.12;
Algorism CIRI2;
Sequence CTAGACAAGTTCCACTGCTCAGCCAGAATGGTACTCCCAATTTGTTTAATGTTTTCGCTGCTAGTTGCAGTAATTCCTTTGCACTCTTCCGAAAGGCCACAGCTTCCACAGTGTTATCATCAAGGTACTGCTACAGATATAATAAATAGTCAGCTATTACAGCCATTTCTAAATTGCTAGGAACCTTTCTGTGGCATCTGAATTAAATTTGAAAATTAACCCCAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:105615182|105615407 hsa-miR-15a-5p 0 0 1
chr9:105615182|105615407 hsa-miR-15a-3p 0 0 1
chr9:105615182|105615407 hsa-miR-19a-5p 0 0 1
chr9:105615182|105615407 hsa-miR-19a-3p 0 0 1
chr9:105615182|105615407 hsa-miR-217-5p 0 0 1
chr9:105615182|105615407 hsa-miR-217-3p 0 0 1
chr9:105615182|105615407 hsa-miR-15b-5p 0 0 1
chr9:105615182|105615407 hsa-miR-15b-3p 0 0 1
chr9:105615182|105615407 hsa-miR-130a-5p 0 0 1
chr9:105615182|105615407 hsa-miR-130a-3p 0 0 1
chr9:105615182|105615407 hsa-miR-141-5p 0 0 1
chr9:105615182|105615407 hsa-miR-141-3p 0 0 1
chr9:105615182|105615407 hsa-miR-149-5p 0 0 1
chr9:105615182|105615407 hsa-miR-149-3p 0 0 1
chr9:105615182|105615407 hsa-miR-195-5p 0 0 1
chr9:105615182|105615407 hsa-miR-195-3p 0 0 1
chr9:105615182|105615407 hsa-miR-200a-5p 0 0 1
chr9:105615182|105615407 hsa-miR-200a-3p 0 0 1
chr9:105615182|105615407 hsa-miR-301a-5p 0 0 1
chr9:105615182|105615407 hsa-miR-301a-3p 0 0 1
chr9:105615182|105615407 hsa-miR-130b-5p 0 0 1
chr9:105615182|105615407 hsa-miR-130b-3p 0 0 1
chr9:105615182|105615407 hsa-miR-384 0 0 1
chr9:105615182|105615407 hsa-miR-424-5p 0 0 1
chr9:105615182|105615407 hsa-miR-424-3p 0 0 1
chr9:105615182|105615407 hsa-miR-497-5p 0 0 1
chr9:105615182|105615407 hsa-miR-497-3p 0 0 1
chr9:105615182|105615407 hsa-miR-527 0 0 1
chr9:105615182|105615407 hsa-miR-503-5p 0 0 1
chr9:105615182|105615407 hsa-miR-503-3p 0 0 1
chr9:105615182|105615407 hsa-miR-570-5p 0 0 1
chr9:105615182|105615407 hsa-miR-570-3p 0 0 1
chr9:105615182|105615407 hsa-miR-607 0 0 1
chr9:105615182|105615407 hsa-miR-646 0 0 1
chr9:105615182|105615407 hsa-miR-454-5p 0 0 1
chr9:105615182|105615407 hsa-miR-454-3p 0 0 1
chr9:105615182|105615407 hsa-miR-891b 0 0 1
chr9:105615182|105615407 hsa-miR-301b-5p 0 0 1
chr9:105615182|105615407 hsa-miR-301b-3p 0 0 1
chr9:105615182|105615407 hsa-miR-663b 1 0 1
chr9:105615182|105615407 hsa-miR-1305 0 0 1
chr9:105615182|105615407 hsa-miR-671-5p 1 0 1
chr9:105615182|105615407 hsa-miR-509-3-5p 0 0 1
chr9:105615182|105615407 hsa-miR-509-5p 0 0 1
chr9:105615182|105615407 hsa-miR-518a-5p 0 0 1
chr9:105615182|105615407 hsa-miR-590-3p 0 0 1
chr9:105615182|105615407 hsa-miR-16 0 0 1
chr9:105615182|105615407 hsa-miR-19b 0 0 1
chr9:105615182|105615407 hsa-miR-637 1 0 0
chr9:105615182|105615407 hsa-miR-920 1 0 0
chr9:105615182|105615407 hsa-miR-3137 1 0 0
chr9:105615182|105615407 hsa-miR-4505 1 0 0
chr9:105615182|105615407 hsa-miR-4657 1 0 0
chr9:105615182|105615407 hsa-miR-5572 1 0 0
chr9:105615182|105615407 hsa-miR-6079 1 1 0
chr9:105615182|105615407 hsa-miR-6081 1 0 0
chr9:105615182|105615407 hsa-miR-8089 1 0 0
chr9:105615182|105615407 hsa-miR-7155-5p 1 0 0
chr9:105615182|105615407 hsa-miR-6833-5p 0 1 0
chr9:105615182|105615407 hsa-miR-7114-5p 0 1 0
chr9:105615182|105615407 hsa-miR-7847-3p 1 0 0
chr9:105615182|105615407 hsa-miR-3064-5p 0 1 0
chr9:105615182|105615407 hsa-miR-23b-5p 1 0 0
chr9:105615182|105615407 hsa-miR-3682-3p 1 1 0
chr9:105615182|105615407 hsa-miR-7108-5p 1 0 0
chr9:105615182|105615407 hsa-miR-6852-5p 0 1 0
chr9:105615182|105615407 hsa-miR-6835-5p 1 0 0
chr9:105615182|105615407 hsa-miR-889-5p 0 1 0
chr9:105615182|105615407 hsa-miR-1911-5p 0 1 0
chr9:105615182|105615407 hsa-miR-6812-5p 1 0 0
chr9:105615182|105615407 hsa-miR-6726-5p 1 0 0
chr9:105615182|105615407 hsa-miR-6737-5p 1 0 0
chr9:105615182|105615407 hsa-miR-6803-5p 1 0 0
chr9:105615182|105615407 hsa-miR-6819-5p 1 0 0
chr9:105615182|105615407 hsa-miR-6751-5p 1 0 0
chr9:105615182|105615407 hsa-miR-6763-5p 1 0 0
chr9:105615182|105615407 hsa-miR-6779-5p 1 0 0
chr9:105615182|105615407 hsa-miR-939-5p 1 0 0
chr9:105615182|105615407 hsa-miR-6855-5p 1 0 0
chr9:105615182|105615407 hsa-miR-4667-5p 1 0 0
chr9:105615182|105615407 hsa-miR-6504-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:105615182|105615407
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MVLPICLMFSLLVAVIPLHSSERPQLPQCYHQGTATDIINSQLLQPFLNC
Nucleotide Sequence ATGGTACTCCCAATTTGTTTAATGTTTTCGCTGCTAGTTGCAGTAATTCCTTTGCACTCTTCCGAAAGGCCACAGCTTCCACAGTGTTATCATCAAGGTACTGCTACAGATATAATAAATAGTCAGCTATTACAGCCATTTCTAAATTGCTAG
CircID chr9:105615182|105615407
ORF Type ORF2
Protein Length 44
Nucleotide Length 135
Protein Sequence MLSQNGTPNLFNVFAASCSNSFALFRKATASTVLSSRYCYRYNK
Nucleotide Sequence CTGCTCAGCCAGAATGGTACTCCCAATTTGTTTAATGTTTTCGCTGCTAGTTGCAGTAATTCCTTTGCACTCTTCCGAAAGGCCACAGCTTCCACAGTGTTATCATCAAGGTACTGCTACAGATATAATAAATAG
CircID chr9:105615182|105615407
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MTIYYICSSTLMITLWKLWPFGRVQRNYCN
Nucleotide Sequence CTGACTATTTATTATATCTGTAGCAGTACCTTGATGATAACACTGTGGAAGCTGTGGCCTTTCGGAAGAGTGCAAAGGAATTACTGCAACTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab