CircRNA Information

General Information
circRNA Basic Information
CircID chr9:112871173|112871348
Strand +
CircType exon
Host Gene ENSG00000148158.15;
Algorism CIRI2;
Sequence GTCCCCTTCCTTCTGGGCCAGCCTCCTCACCTCATGAGACACCAGCCTGGAGGCTGGGAAGGAATCCTTTCTCTGGAAGGACTATTTCTCCCAGAAAATCTGTAATGTACACTGGACTTCCTGGCTCTGTTATCAATAACATGCCAGGAGGACATAAAGTTTGCCTTGTTCCAGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:112871173|112871348 hsa-miR-539-5p 0 0 1
chr9:112871173|112871348 hsa-miR-539-3p 0 0 1
chr9:112871173|112871348 hsa-miR-619-5p 0 0 1
chr9:112871173|112871348 hsa-miR-619-3p 0 0 1
chr9:112871173|112871348 hsa-miR-1252-5p 0 0 1
chr9:112871173|112871348 hsa-miR-1252-3p 0 0 1
chr9:112871173|112871348 hsa-miR-1825 0 0 1
chr9:112871173|112871348 hsa-miR-485-5p 0 1 1
chr9:112871173|112871348 hsa-miR-199a-5p 0 0 1
chr9:112871173|112871348 hsa-miR-525-5p 0 1 1
chr9:112871173|112871348 hsa-miR-199b-5p 0 1 1
chr9:112871173|112871348 hsa-miR-520a-5p 0 1 1
chr9:112871173|112871348 hsa-miR-138 0 0 1
chr9:112871173|112871348 hsa-miR-323-3p 0 0 1
chr9:112871173|112871348 hsa-miR-198 0 1 0
chr9:112871173|112871348 hsa-miR-762 1 0 0
chr9:112871173|112871348 hsa-miR-3135b 1 0 0
chr9:112871173|112871348 hsa-miR-4689 0 1 0
chr9:112871173|112871348 hsa-miR-138-5p 0 1 0
chr9:112871173|112871348 hsa-miR-4687-3p 1 0 0
chr9:112871173|112871348 hsa-miR-4695-5p 0 1 0
chr9:112871173|112871348 hsa-miR-505-5p 0 1 0
chr9:112871173|112871348 hsa-miR-6732-5p 1 0 0
chr9:112871173|112871348 hsa-miR-30c-2-3p 0 1 0
chr9:112871173|112871348 hsa-miR-660-3p 0 1 0
chr9:112871173|112871348 hsa-miR-4774-5p 0 1 0
chr9:112871173|112871348 hsa-miR-3614-3p 0 1 0
chr9:112871173|112871348 hsa-miR-7113-5p 0 1 0
chr9:112871173|112871348 hsa-miR-541-5p 0 1 0
chr9:112871173|112871348 hsa-miR-5001-5p 1 0 0
chr9:112871173|112871348 hsa-miR-6737-5p 1 0 0
chr9:112871173|112871348 hsa-miR-7107-5p 1 0 0
chr9:112871173|112871348 hsa-miR-6788-5p 0 1 0
chr9:112871173|112871348 hsa-miR-6858-5p 0 1 0
chr9:112871173|112871348 hsa-miR-9851-5p 0 1 0
chr9:112871173|112871348 hsa-miR-5581-5p 0 1 0
chr9:112871173|112871348 hsa-miR-10399-5p 0 1 0
chr9:112871173|112871348 hsa-miR-4720-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:112871173|112871348
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MGQPPHLMRHQPGGWEGILSLEGLFLPENL
Nucleotide Sequence CTGGGCCAGCCTCCTCACCTCATGAGACACCAGCCTGGAGGCTGGGAAGGAATCCTTTCTCTGGAAGGACTATTTCTCCCAGAAAATCTGTAA
CircID chr9:112871173|112871348
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MEAGKESFLWKDYFSQKICNVHWTSWLCYQ
Nucleotide Sequence CTGGAGGCTGGGAAGGAATCCTTTCTCTGGAAGGACTATTTCTCCCAGAAAATCTGTAATGTACACTGGACTTCCTGGCTCTGTTATCAATAA
CircID chr9:112871173|112871348
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MGRNPFSGRTISPRKSVMYTGLPGSVINNMPGGHKVCLVPG
Nucleotide Sequence CTGGGAAGGAATCCTTTCTCTGGAAGGACTATTTCTCCCAGAAAATCTGTAATGTACACTGGACTTCCTGGCTCTGTTATCAATAACATGCCAGGAGGACATAAAGTTTGCCTTGTTCCAGGT
CircID chr9:112871173|112871348
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MSSWHVIDNRARKSSVHYRFSGRNSPSRERIPSQPPGWCLMR
Nucleotide Sequence ATGTCCTCCTGGCATGTTATTGATAACAGAGCCAGGAAGTCCAGTGTACATTACAGATTTTCTGGGAGAAATAGTCCTTCCAGAGAAAGGATTCCTTCCCAGCCTCCAGGCTGGTGTCTCATGAGGTGA
CircID chr9:112871173|112871348
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MLLITEPGSPVYITDFLGEIVLPEKGFLPSLQAGVS
Nucleotide Sequence ATGTTATTGATAACAGAGCCAGGAAGTCCAGTGTACATTACAGATTTTCTGGGAGAAATAGTCCTTCCAGAGAAAGGATTCCTTCCCAGCCTCCAGGCTGGTGTCTCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab