CircRNA Information

General Information
circRNA Basic Information
CircID chr9:113260886|113261055
Strand +
CircType exon
Host Gene ENSG00000136868.10;
Algorism CIRI2;
Sequence TCCTGTCCTCAGGTGATCCAGCCTGCCTTGGCCCCCCAAAGTGCTGGGATTACAGGCATGGGCCACTGTGTCCGGCCCTGGACCTTATTTTCTAATGTTAAGTTTGAGTTCTGGGTTTAGTTGGGCAAGAATTTCCCTCAGCTGCCATCAATCCTGGCTGAAGTTAACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:113260886|113261055 hsa-miR-888-5p 0 0 1
chr9:113260886|113261055 hsa-miR-888-3p 0 0 1
chr9:113260886|113261055 hsa-miR-543 0 0 1
chr9:113260886|113261055 hsa-miR-940 0 0 1
chr9:113260886|113261055 hsa-miR-663b 0 1 1
chr9:113260886|113261055 hsa-miR-1287-5p 0 0 1
chr9:113260886|113261055 hsa-miR-1287-3p 0 0 1
chr9:113260886|113261055 hsa-miR-1275 0 0 1
chr9:113260886|113261055 hsa-miR-1224-5p 0 0 1
chr9:113260886|113261055 hsa-miR-885-3p 0 0 1
chr9:113260886|113261055 hsa-miR-371-5p 0 0 1
chr9:113260886|113261055 hsa-miR-128 0 0 1
chr9:113260886|113261055 hsa-miR-762 1 0 0
chr9:113260886|113261055 hsa-miR-665 1 0 0
chr9:113260886|113261055 hsa-miR-3714 0 1 0
chr9:113260886|113261055 hsa-miR-3918 0 1 0
chr9:113260886|113261055 hsa-miR-4498 1 0 0
chr9:113260886|113261055 hsa-miR-4505 1 0 0
chr9:113260886|113261055 hsa-miR-4641 0 1 0
chr9:113260886|113261055 hsa-miR-128-3p 0 1 0
chr9:113260886|113261055 hsa-miR-6840-3p 1 0 0
chr9:113260886|113261055 hsa-miR-3157-5p 1 1 0
chr9:113260886|113261055 hsa-miR-6089 1 0 0
chr9:113260886|113261055 hsa-miR-3677-5p 0 1 0
chr9:113260886|113261055 hsa-miR-5006-5p 1 0 0
chr9:113260886|113261055 hsa-miR-4640-5p 1 0 0
chr9:113260886|113261055 hsa-miR-6514-3p 0 1 0
chr9:113260886|113261055 hsa-miR-6823-5p 0 1 0
chr9:113260886|113261055 hsa-miR-4743-5p 1 0 0
chr9:113260886|113261055 hsa-miR-6781-5p 0 1 0
chr9:113260886|113261055 hsa-miR-4724-5p 0 1 0
chr9:113260886|113261055 hsa-miR-216a-3p 0 1 0
chr9:113260886|113261055 hsa-miR-5004-5p 0 1 0
chr9:113260886|113261055 hsa-miR-20b-3p 0 1 0
chr9:113260886|113261055 hsa-miR-4763-3p 1 0 0
chr9:113260886|113261055 hsa-miR-6816-5p 1 0 0
chr9:113260886|113261055 hsa-miR-6865-5p 1 0 0
chr9:113260886|113261055 hsa-miR-5001-5p 1 1 0
chr9:113260886|113261055 hsa-miR-6803-5p 1 0 0
chr9:113260886|113261055 hsa-miR-1915-3p 1 0 0
chr9:113260886|113261055 hsa-miR-3620-5p 1 0 0
chr9:113260886|113261055 hsa-miR-328-5p 1 1 0
chr9:113260886|113261055 hsa-miR-4685-5p 1 1 0
chr9:113260886|113261055 hsa-miR-4726-5p 0 1 0
chr9:113260886|113261055 hsa-miR-6795-5p 1 0 0
chr9:113260886|113261055 hsa-miR-6848-5p 1 0 0
chr9:113260886|113261055 hsa-miR-6887-5p 1 0 0
chr9:113260886|113261055 hsa-miR-6845-5p 0 1 0
chr9:113260886|113261055 hsa-miR-6885-5p 0 1 0
chr9:113260886|113261055 hsa-miR-6762-5p 0 1 0
chr9:113260886|113261055 hsa-miR-6837-5p 1 1 0
chr9:113260886|113261055 hsa-miR-371a-5p 1 0 0
chr9:113260886|113261055 hsa-miR-3681-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:113260886|113261055
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MAPQSAGITGMGHCVRPWTLFSNVKFEFWV
Nucleotide Sequence TTGGCCCCCCAAAGTGCTGGGATTACAGGCATGGGCCACTGTGTCCGGCCCTGGACCTTATTTTCTAATGTTAAGTTTGAGTTCTGGGTTTAG
CircID chr9:113260886|113261055
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MPWPPKVLGLQAWATVSGPGPYFLMLSLSSGFSWARISLSCHQSWLKLT
Nucleotide Sequence CTGCCTTGGCCCCCCAAAGTGCTGGGATTACAGGCATGGGCCACTGTGTCCGGCCCTGGACCTTATTTTCTAATGTTAAGTTTGAGTTCTGGGTTTAGTTGGGCAAGAATTTCCCTCAGCTGCCATCAATCCTGGCTGAAGTTAACC
CircID chr9:113260886|113261055
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence LSSGDPACLGPPKCWDYRHGPLCPALDLIF
Nucleotide Sequence CTGTCCTCAGGTGATCCAGCCTGCCTTGGCCCCCCAAAGTGCTGGGATTACAGGCATGGGCCACTGTGTCCGGCCCTGGACCTTATTTTCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab