CircRNA Information

General Information
circRNA Basic Information
CircID chr9:120409127|120409269
Strand -
CircType exon
Host Gene ENSG00000136861.16;
Algorism CIRI2;
Sequence CTGCTCAGCTCCTGGCCGCTGCAGCGGACCTCCTGGATCAGCTGCTGGTTGTGTCTCTCCTTCTCGCTGCCTTCTTTCTGCAGCCTTTCATTTTCTTCCTTCACGCTGGCATACTCCCGCTGAAGGTGCTCCAGGCTCACGGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:120409127|120409269 hsa-miR-185-5p 0 0 1
chr9:120409127|120409269 hsa-miR-185-3p 0 0 1
chr9:120409127|120409269 hsa-miR-488-5p 0 0 1
chr9:120409127|120409269 hsa-miR-488-3p 0 0 1
chr9:120409127|120409269 hsa-miR-634 0 0 1
chr9:120409127|120409269 hsa-miR-640 0 1 1
chr9:120409127|120409269 hsa-miR-646 0 0 1
chr9:120409127|120409269 hsa-miR-298 0 0 1
chr9:120409127|120409269 hsa-miR-708-5p 0 0 1
chr9:120409127|120409269 hsa-miR-708-3p 0 0 1
chr9:120409127|120409269 hsa-miR-665 0 1 1
chr9:120409127|120409269 hsa-miR-1202 1 1 1
chr9:120409127|120409269 hsa-miR-1252-5p 0 0 1
chr9:120409127|120409269 hsa-miR-1252-3p 0 0 1
chr9:120409127|120409269 hsa-miR-885-3p 1 1 1
chr9:120409127|120409269 hsa-miR-1184 0 1 1
chr9:120409127|120409269 hsa-miR-28-5p 0 0 1
chr9:120409127|120409269 hsa-miR-1254 0 0 1
chr9:120409127|120409269 hsa-miR-923 0 0 1
chr9:120409127|120409269 hsa-miR-650 1 0 0
chr9:120409127|120409269 hsa-miR-3154 1 0 0
chr9:120409127|120409269 hsa-miR-3185 1 1 0
chr9:120409127|120409269 hsa-miR-4254 0 1 0
chr9:120409127|120409269 hsa-miR-3937 1 0 0
chr9:120409127|120409269 hsa-miR-4530 0 1 0
chr9:120409127|120409269 hsa-miR-4533 1 0 0
chr9:120409127|120409269 hsa-miR-4644 0 1 0
chr9:120409127|120409269 hsa-miR-4706 1 0 0
chr9:120409127|120409269 hsa-miR-4739 1 0 0
chr9:120409127|120409269 hsa-miR-5093 1 0 0
chr9:120409127|120409269 hsa-miR-5192 1 0 0
chr9:120409127|120409269 hsa-miR-6090 1 0 0
chr9:120409127|120409269 hsa-miR-6125 1 0 0
chr9:120409127|120409269 hsa-miR-8072 1 0 0
chr9:120409127|120409269 hsa-miR-12118 1 0 0
chr9:120409127|120409269 hsa-miR-4687-3p 1 0 0
chr9:120409127|120409269 hsa-miR-6880-5p 1 0 0
chr9:120409127|120409269 hsa-miR-7847-3p 1 1 0
chr9:120409127|120409269 hsa-miR-4695-5p 1 1 0
chr9:120409127|120409269 hsa-miR-4722-5p 1 0 0
chr9:120409127|120409269 hsa-miR-3677-5p 0 1 0
chr9:120409127|120409269 hsa-miR-1301-3p 0 1 0
chr9:120409127|120409269 hsa-miR-6829-5p 1 0 0
chr9:120409127|120409269 hsa-miR-6770-5p 1 1 0
chr9:120409127|120409269 hsa-miR-3126-5p 1 1 0
chr9:120409127|120409269 hsa-miR-6760-5p 1 1 0
chr9:120409127|120409269 hsa-miR-3194-5p 1 0 0
chr9:120409127|120409269 hsa-miR-1226-5p 1 0 0
chr9:120409127|120409269 hsa-miR-4786-3p 1 0 0
chr9:120409127|120409269 hsa-miR-6749-5p 1 0 0
chr9:120409127|120409269 hsa-miR-6824-5p 1 0 0
chr9:120409127|120409269 hsa-miR-3158-5p 0 1 0
chr9:120409127|120409269 hsa-miR-6878-5p 1 1 0
chr9:120409127|120409269 hsa-miR-34a-5p 1 0 0
chr9:120409127|120409269 hsa-miR-10400-5p 1 0 0
chr9:120409127|120409269 hsa-miR-1207-5p 1 0 0
chr9:120409127|120409269 hsa-miR-6865-5p 1 0 0
chr9:120409127|120409269 hsa-miR-1343-5p 1 0 0
chr9:120409127|120409269 hsa-miR-1249-5p 1 0 0
chr9:120409127|120409269 hsa-miR-6797-5p 1 0 0
chr9:120409127|120409269 hsa-miR-6808-5p 1 0 0
chr9:120409127|120409269 hsa-miR-6879-5p 1 1 0
chr9:120409127|120409269 hsa-miR-1909-3p 1 0 0
chr9:120409127|120409269 hsa-miR-449c-5p 1 0 0
chr9:120409127|120409269 hsa-miR-4632-5p 1 0 0
chr9:120409127|120409269 hsa-miR-6735-5p 1 0 0
chr9:120409127|120409269 hsa-miR-6795-5p 0 1 0
chr9:120409127|120409269 hsa-miR-4436b-3p 1 1 0
chr9:120409127|120409269 hsa-miR-6831-5p 1 0 0
chr9:120409127|120409269 hsa-miR-4758-5p 1 0 0
chr9:120409127|120409269 hsa-miR-34b-5p 1 0 0
chr9:120409127|120409269 hsa-miR-6511a-5p 1 0 0
chr9:120409127|120409269 hsa-miR-7843-5p 1 0 0
chr9:120409127|120409269 hsa-miR-3116 0 1 0
chr9:120409127|120409269 hsa-miR-3173-3p 0 1 0
chr9:120409127|120409269 hsa-miR-34c-5p 1 0 0
chr9:120409127|120409269 hsa-miR-2682-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:120409127|120409269
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence LLSSWPLQRTSWISCWLCLSFSLPSFCSLSFSSFTLAYSR
Nucleotide Sequence CTGCTCAGCTCCTGGCCGCTGCAGCGGACCTCCTGGATCAGCTGCTGGTTGTGTCTCTCCTTCTCGCTGCCTTCTTTCTGCAGCCTTTCATTTTCTTCCTTCACGCTGGCATACTCCCGCTGA
CircID chr9:120409127|120409269
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MAAAADLLDQLLVVSLLLAAFFLQPFIFFLHAGILPLKVLQAHG
Nucleotide Sequence CTGGCCGCTGCAGCGGACCTCCTGGATCAGCTGCTGGTTGTGTCTCTCCTTCTCGCTGCCTTCTTTCTGCAGCCTTTCATTTTCTTCCTTCACGCTGGCATACTCCCGCTGAAGGTGCTCCAGGCTCACGGT
CircID chr9:120409127|120409269
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MEHLQREYASVKEENERLQKEGSEKERHNQQLIQEVRCSGQELS
Nucleotide Sequence CTGGAGCACCTTCAGCGGGAGTATGCCAGCGTGAAGGAAGAAAATGAAAGGCTGCAGAAAGAAGGCAGCGAGAAGGAGAGACACAACCAGCAGCTGATCCAGGAGGTCCGCTGCAGCGGCCAGGAGCTGAGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab