CircRNA Information

General Information
circRNA Basic Information
CircID chr9:124353693|124356912
Strand -
CircType exon
Host Gene ENSG00000136930.11;
Algorism CIRI2;
Sequence ACCTGTACCGGCCAAGCCTGGTCCCCTTCTTGTTGGGCACTGTGTATGGGCGGAGAAAATCCAGCTTGTTCTTGCTGATGACGCAGAGGTCAATGTTGCTTCCGGAGCCCAGGTCGTTGAAGATGCCAGCTGCGATGGCTTCGCTCACCAGATTCTTGGCTTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:124353693|124356912 hsa-miR-95-5p 0 0 1
chr9:124353693|124356912 hsa-miR-95-3p 0 0 1
chr9:124353693|124356912 hsa-miR-192-5p 0 0 1
chr9:124353693|124356912 hsa-miR-192-3p 0 0 1
chr9:124353693|124356912 hsa-miR-215-5p 0 0 1
chr9:124353693|124356912 hsa-miR-215-3p 0 0 1
chr9:124353693|124356912 hsa-miR-545-5p 0 0 1
chr9:124353693|124356912 hsa-miR-545-3p 0 0 1
chr9:124353693|124356912 hsa-miR-552-5p 0 0 1
chr9:124353693|124356912 hsa-miR-552-3p 0 0 1
chr9:124353693|124356912 hsa-miR-631 0 0 1
chr9:124353693|124356912 hsa-miR-1287-5p 0 0 1
chr9:124353693|124356912 hsa-miR-1287-3p 0 0 1
chr9:124353693|124356912 hsa-miR-1290 0 0 1
chr9:124353693|124356912 hsa-miR-671-5p 1 1 1
chr9:124353693|124356912 hsa-miR-1207-3p 0 0 1
chr9:124353693|124356912 hsa-miR-876-5p 0 0 1
chr9:124353693|124356912 hsa-miR-128 0 0 1
chr9:124353693|124356912 hsa-miR-635 0 1 0
chr9:124353693|124356912 hsa-miR-661 1 0 0
chr9:124353693|124356912 hsa-miR-760 1 0 0
chr9:124353693|124356912 hsa-miR-2861 1 0 0
chr9:124353693|124356912 hsa-miR-3154 0 1 0
chr9:124353693|124356912 hsa-miR-4291 0 1 0
chr9:124353693|124356912 hsa-miR-3661 1 1 0
chr9:124353693|124356912 hsa-miR-378g 0 1 0
chr9:124353693|124356912 hsa-miR-4642 0 1 0
chr9:124353693|124356912 hsa-miR-4672 0 1 0
chr9:124353693|124356912 hsa-miR-4674 1 1 0
chr9:124353693|124356912 hsa-miR-4675 1 0 0
chr9:124353693|124356912 hsa-miR-27a-5p 1 0 0
chr9:124353693|124356912 hsa-miR-7851-3p 0 1 0
chr9:124353693|124356912 hsa-miR-1227-5p 1 0 0
chr9:124353693|124356912 hsa-miR-1301-3p 1 0 0
chr9:124353693|124356912 hsa-miR-7855-5p 0 1 0
chr9:124353693|124356912 hsa-miR-4786-3p 1 1 0
chr9:124353693|124356912 hsa-miR-4640-5p 1 0 0
chr9:124353693|124356912 hsa-miR-6821-3p 0 1 0
chr9:124353693|124356912 hsa-miR-6828-5p 1 1 0
chr9:124353693|124356912 hsa-miR-1184 1 0 0
chr9:124353693|124356912 hsa-miR-4776-5p 1 0 0
chr9:124353693|124356912 hsa-miR-3191-3p 1 0 0
chr9:124353693|124356912 hsa-miR-1911-3p 0 1 0
chr9:124353693|124356912 hsa-miR-216a-3p 0 1 0
chr9:124353693|124356912 hsa-miR-6839-3p 0 1 0
chr9:124353693|124356912 hsa-miR-4763-3p 1 0 0
chr9:124353693|124356912 hsa-miR-7107-5p 1 0 0
chr9:124353693|124356912 hsa-miR-6774-5p 1 0 0
chr9:124353693|124356912 hsa-miR-5196-5p 0 1 0
chr9:124353693|124356912 hsa-miR-328-5p 1 0 0
chr9:124353693|124356912 hsa-miR-4749-5p 1 0 0
chr9:124353693|124356912 hsa-miR-4757-5p 1 1 0
chr9:124353693|124356912 hsa-miR-9851-5p 0 1 0
chr9:124353693|124356912 hsa-miR-10400-3p 1 1 0
chr9:124353693|124356912 hsa-miR-6783-3p 1 0 0
chr9:124353693|124356912 hsa-miR-3619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:124353693|124356912
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence LYRPSLVPFLLGTVYGRRKSSLFLLMTQRSMLLPEPRSLKMPAAMASLTRFLAS
Nucleotide Sequence CTGTACCGGCCAAGCCTGGTCCCCTTCTTGTTGGGCACTGTGTATGGGCGGAGAAAATCCAGCTTGTTCTTGCTGATGACGCAGAGGTCAATGTTGCTTCCGGAGCCCAGGTCGTTGAAGATGCCAGCTGCGATGGCTTCGCTCACCAGATTCTTGGCTTCC
CircID chr9:124353693|124356912
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYR
Nucleotide Sequence CTGGTGAGCGAAGCCATCGCAGCTGGCATCTTCAACGACCTGGGCTCCGGAAGCAACATTGACCTCTGCGTCATCAGCAAGAACAAGCTGGATTTTCTCCGCCCATACACAGTGCCCAACAAGAAGGGGACCAGGCTTGGCCGGTACAGG
CircID chr9:124353693|124356912
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MASSTTWAPEATLTSASSARTSWIFSAHTQCPTRRGPGLAGTG
Nucleotide Sequence CTGGCATCTTCAACGACCTGGGCTCCGGAAGCAACATTGACCTCTGCGTCATCAGCAAGAACAAGCTGGATTTTCTCCGCCCATACACAGTGCCCAACAAGAAGGGGACCAGGCTTGGCCGGTACAGGT
CircID chr9:124353693|124356912
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MRHQQEQAGFSPPIHSAQQEGDQAWPVQ
Nucleotide Sequence CTGCGTCATCAGCAAGAACAAGCTGGATTTTCTCCGCCCATACACAGTGCCCAACAAGAAGGGGACCAGGCTTGGCCGGTACAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab