CircRNA Information

General Information
circRNA Basic Information
CircID chr9:124356173|124356341
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CAGGTTTGGAAACCTCCCAGTTCTGCTCAGCAAATCAACTAGAACCTTCTCCCACTGCTCTGAGTCTGCGCTGCACCACTGAGCCGAGGGGCCCACTCGGCATGTAGGCTCAGGCTCAATGGCACAACTCCCTGTAGCACAGCACACACACACTAGCTCCCAAGGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:124356173|124356341 hsa-miR-221-5p 0 0 1
chr9:124356173|124356341 hsa-miR-221-3p 0 0 1
chr9:124356173|124356341 hsa-miR-222-5p 0 0 1
chr9:124356173|124356341 hsa-miR-222-3p 0 0 1
chr9:124356173|124356341 hsa-miR-648 0 0 1
chr9:124356173|124356341 hsa-miR-920 0 0 1
chr9:124356173|124356341 hsa-miR-1227-5p 0 0 1
chr9:124356173|124356341 hsa-miR-1227-3p 0 0 1
chr9:124356173|124356341 hsa-miR-296-5p 0 1 1
chr9:124356173|124356341 hsa-miR-628-5p 0 0 1
chr9:124356173|124356341 hsa-miR-24 0 0 1
chr9:124356173|124356341 hsa-miR-596 1 0 0
chr9:124356173|124356341 hsa-miR-610 1 0 0
chr9:124356173|124356341 hsa-miR-637 1 1 0
chr9:124356173|124356341 hsa-miR-658 1 0 0
chr9:124356173|124356341 hsa-miR-298 1 0 0
chr9:124356173|124356341 hsa-miR-760 1 0 0
chr9:124356173|124356341 hsa-miR-297 1 0 0
chr9:124356173|124356341 hsa-miR-2278 0 1 0
chr9:124356173|124356341 hsa-miR-3154 1 0 0
chr9:124356173|124356341 hsa-miR-3155a 1 1 0
chr9:124356173|124356341 hsa-miR-3197 1 0 0
chr9:124356173|124356341 hsa-miR-3659 1 0 0
chr9:124356173|124356341 hsa-miR-4440 1 0 0
chr9:124356173|124356341 hsa-miR-4447 1 0 0
chr9:124356173|124356341 hsa-miR-3689c 1 0 0
chr9:124356173|124356341 hsa-miR-3155b 1 0 0
chr9:124356173|124356341 hsa-miR-4489 1 0 0
chr9:124356173|124356341 hsa-miR-4516 0 1 0
chr9:124356173|124356341 hsa-miR-4531 1 0 0
chr9:124356173|124356341 hsa-miR-4648 1 0 0
chr9:124356173|124356341 hsa-miR-4654 1 0 0
chr9:124356173|124356341 hsa-miR-4721 1 0 0
chr9:124356173|124356341 hsa-miR-4739 1 0 0
chr9:124356173|124356341 hsa-miR-6090 1 0 0
chr9:124356173|124356341 hsa-miR-6860 0 1 0
chr9:124356173|124356341 hsa-miR-8077 0 1 0
chr9:124356173|124356341 hsa-miR-8085 1 0 0
chr9:124356173|124356341 hsa-miR-4433b-3p 1 0 0
chr9:124356173|124356341 hsa-miR-7106-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6894-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6799-5p 1 1 0
chr9:124356173|124356341 hsa-miR-3192-5p 0 1 0
chr9:124356173|124356341 hsa-miR-6867-5p 1 1 0
chr9:124356173|124356341 hsa-miR-6746-5p 1 0 0
chr9:124356173|124356341 hsa-miR-24-3p 0 1 0
chr9:124356173|124356341 hsa-miR-6741-5p 1 0 0
chr9:124356173|124356341 hsa-miR-3187-3p 1 0 0
chr9:124356173|124356341 hsa-miR-6793-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6827-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6798-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6760-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6786-5p 1 0 0
chr9:124356173|124356341 hsa-miR-30c-2-3p 1 1 0
chr9:124356173|124356341 hsa-miR-4732-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6878-5p 1 0 0
chr9:124356173|124356341 hsa-miR-5010-5p 1 0 0
chr9:124356173|124356341 hsa-miR-574-5p 1 1 0
chr9:124356173|124356341 hsa-miR-3189-3p 1 0 0
chr9:124356173|124356341 hsa-miR-4638-5p 0 1 0
chr9:124356173|124356341 hsa-miR-4727-3p 1 0 0
chr9:124356173|124356341 hsa-miR-4746-3p 1 0 0
chr9:124356173|124356341 hsa-miR-625-5p 1 1 0
chr9:124356173|124356341 hsa-miR-6767-5p 0 1 0
chr9:124356173|124356341 hsa-miR-1233-5p 1 0 0
chr9:124356173|124356341 hsa-miR-1273h-5p 1 1 0
chr9:124356173|124356341 hsa-miR-3689b-3p 1 0 0
chr9:124356173|124356341 hsa-miR-4763-3p 1 0 0
chr9:124356173|124356341 hsa-miR-6778-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6870-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6726-5p 1 1 0
chr9:124356173|124356341 hsa-miR-6756-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6779-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6780a-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6788-5p 1 1 0
chr9:124356173|124356341 hsa-miR-6879-5p 1 0 0
chr9:124356173|124356341 hsa-miR-5196-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6780b-5p 1 0 0
chr9:124356173|124356341 hsa-miR-3689a-3p 0 1 0
chr9:124356173|124356341 hsa-miR-4649-5p 1 0 0
chr9:124356173|124356341 hsa-miR-4745-5p 1 1 0
chr9:124356173|124356341 hsa-miR-6729-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6846-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6848-5p 1 0 0
chr9:124356173|124356341 hsa-miR-6858-5p 1 0 0
chr9:124356173|124356341 hsa-miR-939-5p 1 0 0
chr9:124356173|124356341 hsa-miR-1266-5p 0 1 0
chr9:124356173|124356341 hsa-miR-30c-1-3p 1 1 0
chr9:124356173|124356341 hsa-miR-6731-5p 1 0 0
chr9:124356173|124356341 hsa-miR-1199-5p 0 1 0
chr9:124356173|124356341 hsa-miR-5008-3p 0 1 0
chr9:124356173|124356341 hsa-miR-1914-3p 1 0 0
chr9:124356173|124356341 hsa-miR-4665-5p 1 0 0
chr9:124356173|124356341 hsa-miR-4716-3p 1 0 0
chr9:124356173|124356341 hsa-miR-6766-5p 1 0 0
chr9:124356173|124356341 hsa-miR-5591-5p 1 1 0
chr9:124356173|124356341 hsa-miR-6724-5p 1 1 0
chr9:124356173|124356341 hsa-miR-7157-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:124356173|124356341
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MSRGAHSACRLRLNGTTPCSTAHTH
Nucleotide Sequence CTGAGCCGAGGGGCCCACTCGGCATGTAGGCTCAGGCTCAATGGCACAACTCCCTGTAGCACAGCACACACACACTAG
CircID chr9:124356173|124356341
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence METSQFCSANQLEPSPTALSLRCTTEPRGPLGM
Nucleotide Sequence TTGGAAACCTCCCAGTTCTGCTCAGCAAATCAACTAGAACCTTCTCCCACTGCTCTGAGTCTGCGCTGCACCACTGAGCCGAGGGGCCCACTCGGCATGTAG
CircID chr9:124356173|124356341
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MSLSLHAEWAPRLSGAAQTQSSGRRF
Nucleotide Sequence TTGAGCCTGAGCCTACATGCCGAGTGGGCCCCTCGGCTCAGTGGTGCAGCGCAGACTCAGAGCAGTGGGAGAAGGTTCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab