CircRNA Information

General Information
circRNA Basic Information
CircID chr9:124878680|124878904
Strand -
CircType exon
Host Gene ENSG00000136935.12;
Algorism CIRI2;
Sequence ACCTGAAACTGCCGAGGAGTGGGGCCTGGGGTGCGTGTGGGACCAGTTCAATGGCTGGAGAAGCCACGGAGGCAGCGGATGGGCTTCTGTGGAAATGTAGCTGCCTTTGGCTGGCTGTGAGCTACCCAGTCTTAGAGATTCTTTCCTGGAACAGTTGAAAAAGGAAATCCTACTTTGAAAAAAGGCTACCTCTTACCCATCAAACTTGCAGAACAGAAGAGACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:124878680|124878904 hsa-let-7b-5p 0 0 1
chr9:124878680|124878904 hsa-let-7b-3p 0 0 1
chr9:124878680|124878904 hsa-let-7c-5p 0 0 1
chr9:124878680|124878904 hsa-let-7c-3p 0 0 1
chr9:124878680|124878904 hsa-let-7d-5p 0 0 1
chr9:124878680|124878904 hsa-let-7d-3p 0 0 1
chr9:124878680|124878904 hsa-let-7e-5p 0 0 1
chr9:124878680|124878904 hsa-let-7e-3p 0 0 1
chr9:124878680|124878904 hsa-miR-98-5p 0 0 1
chr9:124878680|124878904 hsa-miR-98-3p 0 0 1
chr9:124878680|124878904 hsa-miR-221-5p 0 0 1
chr9:124878680|124878904 hsa-miR-221-3p 0 0 1
chr9:124878680|124878904 hsa-miR-222-5p 0 0 1
chr9:124878680|124878904 hsa-miR-222-3p 0 0 1
chr9:124878680|124878904 hsa-let-7g-5p 0 0 1
chr9:124878680|124878904 hsa-let-7g-3p 0 0 1
chr9:124878680|124878904 hsa-let-7i-5p 0 0 1
chr9:124878680|124878904 hsa-let-7i-3p 0 0 1
chr9:124878680|124878904 hsa-miR-186-5p 0 0 1
chr9:124878680|124878904 hsa-miR-186-3p 0 0 1
chr9:124878680|124878904 hsa-miR-520g-5p 0 0 1
chr9:124878680|124878904 hsa-miR-520g-3p 0 0 1
chr9:124878680|124878904 hsa-miR-520h 0 0 1
chr9:124878680|124878904 hsa-miR-555 0 0 1
chr9:124878680|124878904 hsa-miR-607 0 0 1
chr9:124878680|124878904 hsa-miR-766-5p 0 0 1
chr9:124878680|124878904 hsa-miR-766-3p 0 0 1
chr9:124878680|124878904 hsa-miR-665 0 0 1
chr9:124878680|124878904 hsa-miR-216b-5p 0 0 1
chr9:124878680|124878904 hsa-miR-216b-3p 0 0 1
chr9:124878680|124878904 hsa-miR-1236-5p 0 0 1
chr9:124878680|124878904 hsa-miR-1236-3p 0 0 1
chr9:124878680|124878904 hsa-miR-1305 0 1 1
chr9:124878680|124878904 hsa-miR-188-3p 0 0 1
chr9:124878680|124878904 hsa-miR-483-3p 0 0 1
chr9:124878680|124878904 hsa-miR-582-3p 0 0 1
chr9:124878680|124878904 hsa-miR-876-5p 0 0 1
chr9:124878680|124878904 hsa-miR-515-5p 0 0 1
chr9:124878680|124878904 hsa-let-7a 0 0 1
chr9:124878680|124878904 hsa-let-7f 0 0 1
chr9:124878680|124878904 hsa-miR-544 0 0 1
chr9:124878680|124878904 hsa-miR-499-5p 0 0 1
chr9:124878680|124878904 hsa-miR-4286 1 1 0
chr9:124878680|124878904 hsa-miR-4515 1 1 0
chr9:124878680|124878904 hsa-miR-1247-3p 1 0 0
chr9:124878680|124878904 hsa-miR-4726-3p 1 0 0
chr9:124878680|124878904 hsa-miR-6861-5p 0 1 0
chr9:124878680|124878904 hsa-miR-6720-5p 1 0 0
chr9:124878680|124878904 hsa-miR-296-5p 1 0 0
chr9:124878680|124878904 hsa-miR-874-5p 1 1 0
chr9:124878680|124878904 hsa-miR-6840-5p 1 0 0
chr9:124878680|124878904 hsa-miR-197-5p 1 0 0
chr9:124878680|124878904 hsa-miR-3189-5p 1 0 0
chr9:124878680|124878904 hsa-miR-6874-5p 1 0 0
chr9:124878680|124878904 hsa-miR-3194-5p 0 1 0
chr9:124878680|124878904 hsa-miR-6882-3p 0 1 0
chr9:124878680|124878904 hsa-miR-6815-3p 0 1 0
chr9:124878680|124878904 hsa-miR-548au-3p 0 1 0
chr9:124878680|124878904 hsa-miR-2276-3p 1 1 0
chr9:124878680|124878904 hsa-miR-3180-5p 1 0 0
chr9:124878680|124878904 hsa-miR-1292-3p 1 1 0
chr9:124878680|124878904 hsa-miR-4433a-5p 1 1 0
chr9:124878680|124878904 hsa-miR-4433b-5p 1 1 0
chr9:124878680|124878904 hsa-miR-19b-1-5p 1 1 0
chr9:124878680|124878904 hsa-miR-6769a-5p 1 1 0
chr9:124878680|124878904 hsa-miR-1915-3p 1 0 0
chr9:124878680|124878904 hsa-miR-10398-3p 1 0 0
chr9:124878680|124878904 hsa-miR-6512-3p 0 1 0
chr9:124878680|124878904 hsa-miR-6814-3p 1 0 0
chr9:124878680|124878904 hsa-miR-19b-2-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:124878680|124878904
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MPLAGCELPSLRDSFLEQLKKEILL
Nucleotide Sequence CTGCCTTTGGCTGGCTGTGAGCTACCCAGTCTTAGAGATTCTTTCCTGGAACAGTTGAAAAAGGAAATCCTACTTTGA
CircID chr9:124878680|124878904
ORF Type ORF2
Protein Length 51
Nucleotide Length 156
Protein Sequence LKLPRSGAWGACGTSSMAGEATEAADGLLWKCSCLWLAVSYPVLEILSWNS
Nucleotide Sequence CTGAAACTGCCGAGGAGTGGGGCCTGGGGTGCGTGTGGGACCAGTTCAATGGCTGGAGAAGCCACGGAGGCAGCGGATGGGCTTCTGTGGAAATGTAGCTGCCTTTGGCTGGCTGTGAGCTACCCAGTCTTAGAGATTCTTTCCTGGAACAGTTGA
CircID chr9:124878680|124878904
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MGSSQPAKGSYISTEAHPLPPWLLQPLNWSHTHPRPHSSAVSG
Nucleotide Sequence CTGGGTAGCTCACAGCCAGCCAAAGGCAGCTACATTTCCACAGAAGCCCATCCGCTGCCTCCGTGGCTTCTCCAGCCATTGAACTGGTCCCACACGCACCCCAGGCCCCACTCCTCGGCAGTTTCAGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab