CircRNA Information

General Information
circRNA Basic Information
CircID chr9:124908377|124912026
Strand -
CircType exon
Host Gene ENSG00000136935.13;
Algorism find_circ;CIRI2;DCC;
Sequence GTCACTGCTGAAACTCAAGAGAAAGAAGACGTTATCACACATTTGCAAGAGAAGGTTGCATCCTTGGAGAAGAGACTAGAACAGAACTTATCAGGAGAAGAACACTTGCAAGAACTCCTGAAAGAGTCTTCTTTTACTCTTCTTTCAACTTACAGAAAACACTTGCTGAGCAGAATTTGGAGGATACCAGACAACAGCTCTTGGCAGCCAGAAGCAGCCAGGCTAAGGCCATTAACACCCTGGAGACTCGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:124908377|124912026 hsa-miR-377-5p 0 0 1
chr9:124908377|124912026 hsa-miR-377-3p 0 0 1
chr9:124908377|124912026 hsa-miR-335-5p 0 0 1
chr9:124908377|124912026 hsa-miR-335-3p 0 0 1
chr9:124908377|124912026 hsa-miR-432-5p 0 0 1
chr9:124908377|124912026 hsa-miR-432-3p 0 0 1
chr9:124908377|124912026 hsa-miR-570-5p 0 0 1
chr9:124908377|124912026 hsa-miR-570-3p 0 0 1
chr9:124908377|124912026 hsa-miR-620 0 0 1
chr9:124908377|124912026 hsa-miR-765 0 0 1
chr9:124908377|124912026 hsa-miR-1253 0 0 1
chr9:124908377|124912026 hsa-miR-1270 0 0 1
chr9:124908377|124912026 hsa-miR-885-3p 0 0 1
chr9:124908377|124912026 hsa-miR-361-5p 0 0 1
chr9:124908377|124912026 hsa-miR-324-5p 0 0 1
chr9:124908377|124912026 hsa-miR-628-5p 0 0 1
chr9:124908377|124912026 hsa-miR-362-5p 0 1 1
chr9:124908377|124912026 hsa-miR-450b-5p 0 1 1
chr9:124908377|124912026 hsa-miR-768-5p 0 0 1
chr9:124908377|124912026 hsa-miR-1185 0 0 1
chr9:124908377|124912026 hsa-miR-612 1 0 0
chr9:124908377|124912026 hsa-miR-298 0 1 0
chr9:124908377|124912026 hsa-miR-3132 1 0 0
chr9:124908377|124912026 hsa-miR-3154 1 0 0
chr9:124908377|124912026 hsa-miR-4308 0 1 0
chr9:124908377|124912026 hsa-miR-3916 0 1 0
chr9:124908377|124912026 hsa-miR-4516 1 1 0
chr9:124908377|124912026 hsa-miR-4663 1 0 0
chr9:124908377|124912026 hsa-miR-4784 1 0 0
chr9:124908377|124912026 hsa-miR-6069 1 0 0
chr9:124908377|124912026 hsa-miR-6081 0 1 0
chr9:124908377|124912026 hsa-miR-12122 1 0 0
chr9:124908377|124912026 hsa-miR-12131 0 1 0
chr9:124908377|124912026 hsa-miR-510-5p 1 0 0
chr9:124908377|124912026 hsa-miR-3157-5p 0 1 0
chr9:124908377|124912026 hsa-miR-6894-5p 1 0 0
chr9:124908377|124912026 hsa-miR-6833-5p 1 0 0
chr9:124908377|124912026 hsa-miR-197-5p 1 0 0
chr9:124908377|124912026 hsa-miR-6770-5p 0 1 0
chr9:124908377|124912026 hsa-miR-1226-5p 1 0 0
chr9:124908377|124912026 hsa-miR-1229-5p 0 1 0
chr9:124908377|124912026 hsa-miR-877-5p 1 0 0
chr9:124908377|124912026 hsa-miR-4732-5p 1 0 0
chr9:124908377|124912026 hsa-miR-5010-5p 0 1 0
chr9:124908377|124912026 hsa-miR-6866-5p 1 0 0
chr9:124908377|124912026 hsa-miR-744-5p 1 0 0
chr9:124908377|124912026 hsa-miR-4766-5p 0 1 0
chr9:124908377|124912026 hsa-miR-5197-3p 0 1 0
chr9:124908377|124912026 hsa-miR-3664-3p 0 1 0
chr9:124908377|124912026 hsa-miR-6865-5p 1 0 0
chr9:124908377|124912026 hsa-miR-11181-3p 1 0 0
chr9:124908377|124912026 hsa-miR-6788-5p 1 0 0
chr9:124908377|124912026 hsa-miR-6780b-5p 1 1 0
chr9:124908377|124912026 hsa-miR-4725-3p 1 0 0
chr9:124908377|124912026 hsa-miR-6739-5p 1 0 0
chr9:124908377|124912026 hsa-miR-3679-5p 0 1 0
chr9:124908377|124912026 hsa-miR-6859-5p 0 1 0
chr9:124908377|124912026 hsa-miR-642a-3p 0 1 0
chr9:124908377|124912026 hsa-miR-3059-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:124908377|124912026
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MALAWLLLAAKSCCLVSSKFCSASVFCKLKEE*
Nucleotide Sequence ATGGCCTTAGCCTGGCTGCTTCTGGCTGCCAAGAGCTGTTGTCTGGTATCCTCCAAATTCTGCTCAGCAAGTGTTTTCTGTAAGTTGAAAGAAGAGTAA
CircID chr9:124908377|124912026
ORF Type ORF2
Protein Length 69
Nucleotide Length 207
Protein Sequence LQEKVASLEKRLEQNLSGEEHLQELLKESSFTLLSTYRKHLLSRIWRIPDNSSWQPEAARLRPLTPWRL
Nucleotide Sequence TTGCAAGAGAAGGTTGCATCCTTGGAGAAGAGACTAGAACAGAACTTATCAGGAGAAGAACACTTGCAAGAACTCCTGAAAGAGTCTTCTTTTACTCTTCTTTCAACTTACAGAAAACACTTGCTGAGCAGAATTTGGAGGATACCAGACAACAGCTCTTGGCAGCCAGAAGCAGCCAGGCTAAGGCCATTAACACCCTGGAGACTC
CircID chr9:124908377|124912026
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MAASGCQELLSGILQILLSKCFLFQEFLQVFFS
Nucleotide Sequence CTGGCTGCTTCTGGCTGCCAAGAGCTGTTGTCTGGTATCCTCCAAATTCTGCTCAGCAAGTGTTTTCTCTTTCAGGAGTTCTTGCAAGTGTTCTTCTCCTGA
CircID chr9:124908377|124912026
ORF Type ORF2
Protein Length 62
Nucleotide Length 189
Protein Sequence MALAWLLLAAKSCCLVSSKFCSASVFSFRSSCKCSSPDKFCSSLFSKDATFSCKCVITSSFS
Nucleotide Sequence ATGGCCTTAGCCTGGCTGCTTCTGGCTGCCAAGAGCTGTTGTCTGGTATCCTCCAAATTCTGCTCAGCAAGTGTTTTCTCTTTCAGGAGTTCTTGCAAGTGTTCTTCTCCTGATAAGTTCTGTTCTAGTCTCTTCTCCAAGGATGCAACCTTCTCTTGCAAATGTGTGATAACGTCTTCTTTCTCTTGA
CircID chr9:124908377|124912026
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MPRAVVWYPPNSAQQVFSLSGVLASVLLLISSVLVSSPRMQPSLANV
Nucleotide Sequence CTGCCAAGAGCTGTTGTCTGGTATCCTCCAAATTCTGCTCAGCAAGTGTTTTCTCTTTCAGGAGTTCTTGCAAGTGTTCTTCTCCTGATAAGTTCTGTTCTAGTCTCTTCTCCAAGGATGCAACCTTCTCTTGCAAATGTGTGA
CircID chr9:124908377|124912026
ORF Type ORF4
Protein Length 60
Nucleotide Length 180
Protein Sequence MQEKVASLEKRLEQNLSGEEHLQELLKEKTLAEQNLEDTRQQLLAARSSQAKAINTLETR
Nucleotide Sequence TTGCAAGAGAAGGTTGCATCCTTGGAGAAGAGACTAGAACAGAACTTATCAGGAGAAGAACACTTGCAAGAACTCCTGAAAGAGAAAACACTTGCTGAGCAGAATTTGGAGGATACCAGACAACAGCTCTTGGCAGCCAGAAGCAGCCAGGCTAAGGCCATTAACACCCTGGAGACTCGG
CircID chr9:124908377|124912026
ORF Type ORF5
Protein Length 29
Nucleotide Length 87
Protein Sequence MLSRIWRIPDNSSWQPEAARLRPLTPWRL
Nucleotide Sequence TTGCTGAGCAGAATTTGGAGGATACCAGACAACAGCTCTTGGCAGCCAGAAGCAGCCAGGCTAAGGCCATTAACACCCTGGAGACTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr9:124908377|124912026 NOP56 0 1 0
chr9:124908377|124912026 MOV10 0 1 1
chr9:124908377|124912026 FUS 0 1 0
chr9:124908377|124912026 DHX9 0 1 0
chr9:124908377|124912026 PRPF8 0 1 0
chr9:124908377|124912026 UPF1 0 1 0
chr9:124908377|124912026 FMR1 0 0 1
chr9:124908377|124912026 CPSF6 0 1 1
chr9:124908377|124912026 SRSF1 0 1 1
chr9:124908377|124912026 NOP58 0 0 3
chr9:124908377|124912026 NONO 0 1 0
chr9:124908377|124912026 U2AF2 5 2 0
chr9:124908377|124912026 DDX54 0 0 7
chr9:124908377|124912026 RBM10 0 1 0
chr9:124908377|124912026 HNRNPL 0 1 0
chr9:124908377|124912026 PTBP1 1 3 0
chr9:124908377|124912026 HNRNPC 6 0 0
chr9:124908377|124912026 TRA2A 0 0 4
chr9:124908377|124912026 ZNF184 0 0 1
chr9:124908377|124912026 DDX3X 0 1 0
chr9:124908377|124912026 ACIN1 0 0 1
chr9:124908377|124912026 IGF2BP2 1 0 5
chr9:124908377|124912026 BUD13 0 1 2
chr9:124908377|124912026 METTL3 1 0 0
chr9:124908377|124912026 CSTF2T 0 0 1
chr9:124908377|124912026 RBM22 0 1 0
chr9:124908377|124912026 AGO2 0 2 0
chr9:124908377|124912026 EIF4A3 4 1 4
chr9:124908377|124912026 FBL 0 0 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab