CircRNA Information

General Information
circRNA Basic Information
CircID chr9:127108375|127108500
Strand -
CircType exon
Host Gene ENSG00000136859.8;
Algorism CIRI2;
Sequence CTCGCTCACAATGCCGCCGTCCACCTCCACCAGCTGCTGCAGCGTCTCGATCTGCCGCTTCTGCTTGAGCAGCTCATTGTTGAGCAGCTCTAGCTCCTGCTTATGCACTCGGTTCTCCAGAAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:127108375|127108500 hsa-miR-107 0 0 1
chr9:127108375|127108500 hsa-miR-184 0 0 1
chr9:127108375|127108500 hsa-miR-558 0 0 1
chr9:127108375|127108500 hsa-miR-589-5p 0 0 1
chr9:127108375|127108500 hsa-miR-589-3p 0 0 1
chr9:127108375|127108500 hsa-miR-646 0 0 1
chr9:127108375|127108500 hsa-miR-298 0 1 1
chr9:127108375|127108500 hsa-miR-708-5p 0 0 1
chr9:127108375|127108500 hsa-miR-708-3p 0 0 1
chr9:127108375|127108500 hsa-miR-1299 0 0 1
chr9:127108375|127108500 hsa-miR-1256 0 0 1
chr9:127108375|127108500 hsa-miR-139-3p 1 0 1
chr9:127108375|127108500 hsa-miR-1184 0 1 1
chr9:127108375|127108500 hsa-miR-28-5p 0 0 1
chr9:127108375|127108500 hsa-miR-1207-3p 0 0 1
chr9:127108375|127108500 hsa-miR-767-3p 0 0 1
chr9:127108375|127108500 hsa-miR-556-5p 0 0 1
chr9:127108375|127108500 hsa-miR-103 0 0 1
chr9:127108375|127108500 hsa-miR-138 0 0 1
chr9:127108375|127108500 hsa-miR-516b 0 0 1
chr9:127108375|127108500 hsa-miR-1268a 1 0 0
chr9:127108375|127108500 hsa-miR-3138 1 0 0
chr9:127108375|127108500 hsa-miR-3139 0 1 0
chr9:127108375|127108500 hsa-miR-3165 1 0 0
chr9:127108375|127108500 hsa-miR-3937 1 0 0
chr9:127108375|127108500 hsa-miR-1268b 1 0 0
chr9:127108375|127108500 hsa-miR-4466 1 0 0
chr9:127108375|127108500 hsa-miR-4467 0 1 0
chr9:127108375|127108500 hsa-miR-4488 1 0 0
chr9:127108375|127108500 hsa-miR-4503 0 1 0
chr9:127108375|127108500 hsa-miR-3960 1 0 0
chr9:127108375|127108500 hsa-miR-4651 1 0 0
chr9:127108375|127108500 hsa-miR-4660 1 0 0
chr9:127108375|127108500 hsa-miR-4710 1 0 0
chr9:127108375|127108500 hsa-miR-6165 0 1 0
chr9:127108375|127108500 hsa-miR-8072 1 0 0
chr9:127108375|127108500 hsa-miR-8089 1 0 0
chr9:127108375|127108500 hsa-miR-12114 1 0 0
chr9:127108375|127108500 hsa-miR-12115 0 1 0
chr9:127108375|127108500 hsa-miR-138-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6825-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6894-5p 1 0 0
chr9:127108375|127108500 hsa-miR-4687-3p 1 0 0
chr9:127108375|127108500 hsa-miR-6799-5p 1 0 0
chr9:127108375|127108500 hsa-miR-3692-5p 1 0 0
chr9:127108375|127108500 hsa-miR-8071 1 0 0
chr9:127108375|127108500 hsa-miR-6880-5p 1 1 0
chr9:127108375|127108500 hsa-miR-7847-3p 1 1 0
chr9:127108375|127108500 hsa-miR-4653-3p 0 1 0
chr9:127108375|127108500 hsa-miR-4722-5p 0 1 0
chr9:127108375|127108500 hsa-miR-1301-3p 1 0 0
chr9:127108375|127108500 hsa-miR-6820-5p 0 1 0
chr9:127108375|127108500 hsa-miR-6829-5p 0 1 0
chr9:127108375|127108500 hsa-miR-6732-5p 1 0 0
chr9:127108375|127108500 hsa-miR-2467-3p 1 0 0
chr9:127108375|127108500 hsa-miR-6782-5p 1 0 0
chr9:127108375|127108500 hsa-miR-3934-3p 1 0 0
chr9:127108375|127108500 hsa-miR-6786-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6835-5p 1 0 0
chr9:127108375|127108500 hsa-miR-885-3p 1 0 0
chr9:127108375|127108500 hsa-miR-1228-5p 1 0 0
chr9:127108375|127108500 hsa-miR-4787-5p 1 1 0
chr9:127108375|127108500 hsa-miR-5010-5p 1 0 0
chr9:127108375|127108500 hsa-miR-423-5p 1 0 0
chr9:127108375|127108500 hsa-miR-654-5p 1 0 0
chr9:127108375|127108500 hsa-miR-4804-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6792-5p 0 1 0
chr9:127108375|127108500 hsa-miR-4709-5p 0 1 0
chr9:127108375|127108500 hsa-miR-1233-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6787-5p 1 0 0
chr9:127108375|127108500 hsa-miR-5001-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6737-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6743-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6752-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6756-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6803-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6815-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6819-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6851-5p 1 1 0
chr9:127108375|127108500 hsa-miR-7110-5p 1 0 0
chr9:127108375|127108500 hsa-miR-11181-3p 1 0 0
chr9:127108375|127108500 hsa-miR-6751-5p 1 0 0
chr9:127108375|127108500 hsa-miR-7111-5p 1 0 0
chr9:127108375|127108500 hsa-miR-1237-5p 1 0 0
chr9:127108375|127108500 hsa-miR-1909-3p 0 1 0
chr9:127108375|127108500 hsa-miR-6794-5p 1 0 0
chr9:127108375|127108500 hsa-miR-6511a-5p 1 0 0
chr9:127108375|127108500 hsa-miR-146b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:127108375|127108500
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MPPSTSTSCCSVSICRFCLSSSLLSSSSSCLCTRFSRS
Nucleotide Sequence ATGCCGCCGTCCACCTCCACCAGCTGCTGCAGCGTCTCGATCTGCCGCTTCTGCTTGAGCAGCTCATTGTTGAGCAGCTCTAGCTCCTGCTTATGCACTCGGTTCTCCAGAAGC
CircID chr9:127108375|127108500
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MENRVHKQELELLNNELLKQKRQIETLQQLVEVDGGIVSE
Nucleotide Sequence CTGGAGAACCGAGTGCATAAGCAGGAGCTAGAGCTGCTCAACAATGAGCTGCTCAAGCAGAAGCGGCAGATCGAGACGCTGCAGCAGCTGGTGGAGGTGGACGGCGGCATTGTGAGCGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab