CircRNA Information

General Information
circRNA Basic Information
CircID chr9:127507214|127507903
Strand -
CircType exon
Host Gene ENSG00000136830.10;
Algorism CIRI2;
Sequence AGAGACCACCTGCTTGGCGCGCCGTCGCTTTTCCGAGAGGGTGGCTGACTCCGGGGTGCTGGGGCTGGGGCTGCCGCCCCCGCCGCTGTTGCTGTACTCCTCGCCCCAGTCGATGGGGGCGCCCTCGGCCAGCAGGTGCAGGTTGGGGTCGCTGTTGTGCATGACCATGCTGTCCCGGTAGAGGTTGTGCTTCCTCTGCACCGCGGCCTCCTTCACAGCCTGCAGGATGTCCTTCATGACGGTCTGCAGCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:127507214|127507903 hsa-miR-370-5p 0 0 1
chr9:127507214|127507903 hsa-miR-370-3p 0 0 1
chr9:127507214|127507903 hsa-miR-1205 0 0 1
chr9:127507214|127507903 hsa-miR-1252-5p 0 0 1
chr9:127507214|127507903 hsa-miR-1252-3p 0 0 1
chr9:127507214|127507903 hsa-miR-151-5p 0 0 1
chr9:127507214|127507903 hsa-miR-323-5p 0 0 1
chr9:127507214|127507903 hsa-miR-663 0 0 1
chr9:127507214|127507903 hsa-miR-638 1 0 0
chr9:127507214|127507903 hsa-miR-663a 1 1 0
chr9:127507214|127507903 hsa-miR-762 1 0 0
chr9:127507214|127507903 hsa-miR-1268a 1 0 0
chr9:127507214|127507903 hsa-miR-3154 1 0 0
chr9:127507214|127507903 hsa-miR-3196 0 1 0
chr9:127507214|127507903 hsa-miR-4323 0 1 0
chr9:127507214|127507903 hsa-miR-3907 1 0 0
chr9:127507214|127507903 hsa-miR-3917 1 0 0
chr9:127507214|127507903 hsa-miR-1268b 1 0 0
chr9:127507214|127507903 hsa-miR-3135b 1 0 0
chr9:127507214|127507903 hsa-miR-4463 1 0 0
chr9:127507214|127507903 hsa-miR-4488 0 1 0
chr9:127507214|127507903 hsa-miR-4533 1 0 0
chr9:127507214|127507903 hsa-miR-3960 1 1 0
chr9:127507214|127507903 hsa-miR-4689 1 0 0
chr9:127507214|127507903 hsa-miR-4706 1 0 0
chr9:127507214|127507903 hsa-miR-4739 1 0 0
chr9:127507214|127507903 hsa-miR-5698 1 0 0
chr9:127507214|127507903 hsa-miR-5702 0 1 0
chr9:127507214|127507903 hsa-miR-5787 1 1 0
chr9:127507214|127507903 hsa-miR-8060 0 1 0
chr9:127507214|127507903 hsa-miR-8072 0 1 0
chr9:127507214|127507903 hsa-miR-8089 1 0 0
chr9:127507214|127507903 hsa-miR-12118 0 1 0
chr9:127507214|127507903 hsa-miR-766-3p 1 1 0
chr9:127507214|127507903 hsa-miR-3692-5p 0 1 0
chr9:127507214|127507903 hsa-miR-6089 1 1 0
chr9:127507214|127507903 hsa-miR-7847-3p 1 0 0
chr9:127507214|127507903 hsa-miR-4695-5p 1 1 0
chr9:127507214|127507903 hsa-miR-6742-5p 1 0 0
chr9:127507214|127507903 hsa-miR-3180-3p 0 1 0
chr9:127507214|127507903 hsa-miR-2467-3p 0 1 0
chr9:127507214|127507903 hsa-miR-6765-3p 1 0 0
chr9:127507214|127507903 hsa-miR-6850-5p 1 0 0
chr9:127507214|127507903 hsa-miR-7109-5p 1 0 0
chr9:127507214|127507903 hsa-miR-6763-3p 1 0 0
chr9:127507214|127507903 hsa-miR-4640-5p 1 0 0
chr9:127507214|127507903 hsa-miR-1908-5p 0 1 0
chr9:127507214|127507903 hsa-miR-4783-5p 0 1 0
chr9:127507214|127507903 hsa-miR-4787-5p 1 1 0
chr9:127507214|127507903 hsa-miR-6789-5p 1 0 0
chr9:127507214|127507903 hsa-miR-3678-3p 0 1 0
chr9:127507214|127507903 hsa-miR-6793-3p 0 1 0
chr9:127507214|127507903 hsa-miR-6871-3p 0 1 0
chr9:127507214|127507903 hsa-miR-6789-3p 0 1 0
chr9:127507214|127507903 hsa-miR-500a-3p 0 1 0
chr9:127507214|127507903 hsa-miR-431-5p 1 0 0
chr9:127507214|127507903 hsa-miR-1233-5p 1 0 0
chr9:127507214|127507903 hsa-miR-4763-3p 1 0 0
chr9:127507214|127507903 hsa-miR-6787-5p 0 1 0
chr9:127507214|127507903 hsa-miR-6812-5p 1 1 0
chr9:127507214|127507903 hsa-miR-6816-5p 1 1 0
chr9:127507214|127507903 hsa-miR-3180 0 1 0
chr9:127507214|127507903 hsa-miR-6754-5p 1 0 0
chr9:127507214|127507903 hsa-miR-6756-5p 1 0 0
chr9:127507214|127507903 hsa-miR-4728-5p 1 0 0
chr9:127507214|127507903 hsa-miR-10396b-5p 0 1 0
chr9:127507214|127507903 hsa-miR-10526-3p 1 0 0
chr9:127507214|127507903 hsa-miR-1237-5p 0 1 0
chr9:127507214|127507903 hsa-miR-4632-5p 1 0 0
chr9:127507214|127507903 hsa-miR-4649-5p 1 1 0
chr9:127507214|127507903 hsa-miR-4745-5p 1 0 0
chr9:127507214|127507903 hsa-miR-6729-5p 1 1 0
chr9:127507214|127507903 hsa-miR-675-5p 0 1 0
chr9:127507214|127507903 hsa-miR-6777-5p 1 1 0
chr9:127507214|127507903 hsa-miR-4697-5p 0 1 0
chr9:127507214|127507903 hsa-miR-4758-5p 1 0 0
chr9:127507214|127507903 hsa-miR-10394-3p 1 0 0
chr9:127507214|127507903 hsa-miR-6511b-5p 0 1 0
chr9:127507214|127507903 hsa-miR-10396b-3p 1 0 0
chr9:127507214|127507903 hsa-miR-6785-5p 1 0 0
chr9:127507214|127507903 hsa-miR-10392-3p 1 1 0
chr9:127507214|127507903 hsa-miR-6859-5p 0 1 0
chr9:127507214|127507903 hsa-miR-10394-5p 0 1 0
chr9:127507214|127507903 hsa-miR-6811-5p 0 1 0
chr9:127507214|127507903 hsa-miR-4670-5p 0 1 0
chr9:127507214|127507903 hsa-miR-10399-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:127507214|127507903
ORF Type ORF1
Protein Length 55
Nucleotide Length 168
Protein Sequence MARRRFSERVADSGVLGLGLPPPPLLLYSSPQSMGAPSASRCRLGSLLCMTMLSR
Nucleotide Sequence TTGGCGCGCCGTCGCTTTTCCGAGAGGGTGGCTGACTCCGGGGTGCTGGGGCTGGGGCTGCCGCCCCCGCCGCTGTTGCTGTACTCCTCGCCCCAGTCGATGGGGGCGCCCTCGGCCAGCAGGTGCAGGTTGGGGTCGCTGTTGTGCATGACCATGCTGTCCCGGTAG
CircID chr9:127507214|127507903
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MTPGCWGWGCRPRRCCCTPRPSRWGRPRPAGAGWGRCCA
Nucleotide Sequence CTGACTCCGGGGTGCTGGGGCTGGGGCTGCCGCCCCCGCCGCTGTTGCTGTACTCCTCGCCCCAGTCGATGGGGGCGCCCTCGGCCAGCAGGTGCAGGTTGGGGTCGCTGTTGTGCATGA
CircID chr9:127507214|127507903
ORF Type ORF3
Protein Length 83
Nucleotide Length 249
Protein Sequence MQTVMKDILQAVKEAAVQRKHNLYRDSMVMHNSDPNLHLLAEGAPIDWGEEYSNSGGGGSPSPSTPESATLSEKRRRAKQVVS
Nucleotide Sequence CTGCAGACCGTCATGAAGGACATCCTGCAGGCTGTGAAGGAGGCCGCGGTGCAGAGGAAGCACAACCTCTACCGGGACAGCATGGTCATGCACAACAGCGACCCCAACCTGCACCTGCTGGCCGAGGGCGCCCCCATCGACTGGGGCGAGGAGTACAGCAACAGCGGCGGGGGCGGCAGCCCCAGCCCCAGCACCCCGGAGTCAGCCACCCTCTCGGAAAAGCGACGGCGCGCCAAGCAGGTGGTCTCT
CircID chr9:127507214|127507903
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MGRGVQQQRRGRQPQPQHPGVSHPLGKATARQAGGL
Nucleotide Sequence CTGGGGCGAGGAGTACAGCAACAGCGGCGGGGGCGGCAGCCCCAGCCCCAGCACCCCGGAGTCAGCCACCCTCTCGGAAAAGCGACGGCGCGCCAAGCAGGTGGTCTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab