CircRNA Information

General Information
circRNA Basic Information
CircID chr9:127692237|127692359
Strand -
CircType exon
Host Gene ENSG00000136854.16;
Algorism CIRI2;
Sequence CTCCGCCTCCCTTTCAGAGCCTGCTCCCCGCCCTCTCTGCTCGCTGCATTGTGGTGTTCTCTTCTCAAGGCTTTGAAATCTCCCCTTGCACTGAGATTAGTCGTCAGATCTCTCCCCGTCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:127692237|127692359 hsa-miR-148a-5p 0 0 1
chr9:127692237|127692359 hsa-miR-148a-3p 0 0 1
chr9:127692237|127692359 hsa-miR-216a-5p 0 0 1
chr9:127692237|127692359 hsa-miR-216a-3p 0 0 1
chr9:127692237|127692359 hsa-miR-130a-5p 0 0 1
chr9:127692237|127692359 hsa-miR-130a-3p 0 0 1
chr9:127692237|127692359 hsa-miR-152-5p 0 0 1
chr9:127692237|127692359 hsa-miR-152-3p 0 0 1
chr9:127692237|127692359 hsa-miR-185-5p 0 0 1
chr9:127692237|127692359 hsa-miR-185-3p 0 0 1
chr9:127692237|127692359 hsa-miR-301a-5p 0 0 1
chr9:127692237|127692359 hsa-miR-301a-3p 0 0 1
chr9:127692237|127692359 hsa-miR-130b-5p 0 0 1
chr9:127692237|127692359 hsa-miR-130b-3p 0 0 1
chr9:127692237|127692359 hsa-miR-148b-5p 0 0 1
chr9:127692237|127692359 hsa-miR-148b-3p 0 0 1
chr9:127692237|127692359 hsa-miR-484 0 0 1
chr9:127692237|127692359 hsa-miR-488-5p 0 0 1
chr9:127692237|127692359 hsa-miR-488-3p 0 0 1
chr9:127692237|127692359 hsa-miR-580-5p 0 0 1
chr9:127692237|127692359 hsa-miR-580-3p 0 0 1
chr9:127692237|127692359 hsa-miR-607 0 0 1
chr9:127692237|127692359 hsa-miR-454-5p 0 0 1
chr9:127692237|127692359 hsa-miR-454-3p 0 0 1
chr9:127692237|127692359 hsa-miR-760 0 0 1
chr9:127692237|127692359 hsa-miR-301b-5p 0 0 1
chr9:127692237|127692359 hsa-miR-301b-3p 0 0 1
chr9:127692237|127692359 hsa-miR-216b-5p 0 0 1
chr9:127692237|127692359 hsa-miR-216b-3p 0 0 1
chr9:127692237|127692359 hsa-miR-939-5p 0 0 1
chr9:127692237|127692359 hsa-miR-939-3p 0 0 1
chr9:127692237|127692359 hsa-miR-1253 0 0 1
chr9:127692237|127692359 hsa-miR-1321 0 0 1
chr9:127692237|127692359 hsa-miR-330-3p 0 0 1
chr9:127692237|127692359 hsa-miR-483-5p 1 1 1
chr9:127692237|127692359 hsa-miR-1300 0 0 1
chr9:127692237|127692359 hsa-miR-768-3p 0 0 1
chr9:127692237|127692359 hsa-miR-663 0 0 1
chr9:127692237|127692359 hsa-miR-184 1 0 0
chr9:127692237|127692359 hsa-miR-663a 1 0 0
chr9:127692237|127692359 hsa-miR-3141 1 1 0
chr9:127692237|127692359 hsa-miR-3154 1 0 0
chr9:127692237|127692359 hsa-miR-3155a 0 1 0
chr9:127692237|127692359 hsa-miR-3175 1 1 0
chr9:127692237|127692359 hsa-miR-3665 1 0 0
chr9:127692237|127692359 hsa-miR-3666 0 1 0
chr9:127692237|127692359 hsa-miR-4466 1 0 0
chr9:127692237|127692359 hsa-miR-3155b 0 1 0
chr9:127692237|127692359 hsa-miR-4488 1 0 0
chr9:127692237|127692359 hsa-miR-4689 1 0 0
chr9:127692237|127692359 hsa-miR-4706 1 1 0
chr9:127692237|127692359 hsa-miR-4739 1 1 0
chr9:127692237|127692359 hsa-miR-5739 1 0 0
chr9:127692237|127692359 hsa-miR-5787 1 0 0
chr9:127692237|127692359 hsa-miR-6081 1 0 0
chr9:127692237|127692359 hsa-miR-6090 1 0 0
chr9:127692237|127692359 hsa-miR-6165 1 0 0
chr9:127692237|127692359 hsa-miR-8072 1 0 0
chr9:127692237|127692359 hsa-miR-8085 1 0 0
chr9:127692237|127692359 hsa-miR-8089 1 0 0
chr9:127692237|127692359 hsa-miR-12115 1 0 0
chr9:127692237|127692359 hsa-miR-6510-5p 1 0 0
chr9:127692237|127692359 hsa-miR-3663-3p 1 1 0
chr9:127692237|127692359 hsa-miR-6089 1 0 0
chr9:127692237|127692359 hsa-miR-4755-3p 1 0 0
chr9:127692237|127692359 hsa-miR-197-5p 1 0 0
chr9:127692237|127692359 hsa-miR-3180-3p 1 0 0
chr9:127692237|127692359 hsa-miR-6772-5p 1 0 0
chr9:127692237|127692359 hsa-miR-1908-5p 1 1 0
chr9:127692237|127692359 hsa-miR-1228-5p 1 0 0
chr9:127692237|127692359 hsa-miR-296-3p 1 0 0
chr9:127692237|127692359 hsa-miR-4690-5p 1 0 0
chr9:127692237|127692359 hsa-miR-92b-5p 1 0 0
chr9:127692237|127692359 hsa-miR-149-3p 1 0 0
chr9:127692237|127692359 hsa-miR-3925-5p 0 1 0
chr9:127692237|127692359 hsa-miR-4766-5p 0 1 0
chr9:127692237|127692359 hsa-miR-1207-5p 1 0 0
chr9:127692237|127692359 hsa-miR-6787-5p 1 1 0
chr9:127692237|127692359 hsa-miR-6812-5p 1 0 0
chr9:127692237|127692359 hsa-miR-6816-5p 1 0 0
chr9:127692237|127692359 hsa-miR-1343-5p 1 1 0
chr9:127692237|127692359 hsa-miR-6743-5p 1 0 0
chr9:127692237|127692359 hsa-miR-6756-5p 1 0 0
chr9:127692237|127692359 hsa-miR-1249-5p 1 0 0
chr9:127692237|127692359 hsa-miR-6763-5p 1 0 0
chr9:127692237|127692359 hsa-miR-6780a-5p 1 0 0
chr9:127692237|127692359 hsa-miR-6879-5p 1 0 0
chr9:127692237|127692359 hsa-miR-4728-5p 1 0 0
chr9:127692237|127692359 hsa-miR-5196-5p 1 0 0
chr9:127692237|127692359 hsa-miR-6780b-5p 1 0 0
chr9:127692237|127692359 hsa-miR-10396b-5p 1 0 0
chr9:127692237|127692359 hsa-miR-1237-5p 1 0 0
chr9:127692237|127692359 hsa-miR-328-5p 1 0 0
chr9:127692237|127692359 hsa-miR-4632-5p 1 0 0
chr9:127692237|127692359 hsa-miR-4649-5p 1 1 0
chr9:127692237|127692359 hsa-miR-4749-5p 1 1 0
chr9:127692237|127692359 hsa-miR-6729-5p 1 0 0
chr9:127692237|127692359 hsa-miR-6777-5p 1 1 0
chr9:127692237|127692359 hsa-miR-6846-5p 1 0 0
chr9:127692237|127692359 hsa-miR-6848-5p 1 0 0
chr9:127692237|127692359 hsa-miR-6887-5p 1 0 0
chr9:127692237|127692359 hsa-miR-6889-5p 1 1 0
chr9:127692237|127692359 hsa-miR-4723-5p 1 0 0
chr9:127692237|127692359 hsa-miR-6758-5p 0 1 0
chr9:127692237|127692359 hsa-miR-6856-5p 0 1 0
chr9:127692237|127692359 hsa-miR-6766-5p 1 0 0
chr9:127692237|127692359 hsa-miR-4667-5p 1 0 0
chr9:127692237|127692359 hsa-miR-4756-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr9:127692237|127692359
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MLAALWCSLLKALKSPLALRLVVRSLPVS
Nucleotide Sequence CTGCTCGCTGCATTGTGGTGTTCTCTTCTCAAGGCTTTGAAATCTCCCCTTGCACTGAGATTAGTCGTCAGATCTCTCCCCGTCTCC
CircID chr9:127692237|127692359
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MLPALSARCIVVFSSQGFEISPCTEISRQISPRL
Nucleotide Sequence CTGCTCCCCGCCCTCTCTGCTCGCTGCATTGTGGTGTTCTCTTCTCAAGGCTTTGAAATCTCCCCTTGCACTGAGATTAGTCGTCAGATCTCTCCCCGTCTC
CircID chr9:127692237|127692359
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MTTNLSARGDFKALRREHHNAASREGGEQALKGRR
Nucleotide Sequence CTGACGACTAATCTCAGTGCAAGGGGAGATTTCAAAGCCTTGAGAAGAGAACACCACAATGCAGCGAGCAGAGAGGGCGGGGAGCAGGCTCTGAAAGGGAGGCGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab