CircRNA Information

General Information
circRNA Basic Information
CircID chr9:127868026|127868416
Strand +
CircType exon
Host Gene ENSG00000106992.16;
Algorism CIRI2;
Sequence GACAATGAGGAGACCATCAAAAAGCGGCTGGAGACCTATTACAAGGCCACAGAACCTGTCATCGCCTTCTATGAGAAACGTGGCATTGTGCGCAAGGTGGGCCCCGCGGGCCCAGGGGCAGCTCCGGGAAGAACGGGTTCCTATGTGGCTCCGCCTCAGCTCACTGTGTGGCCTCAGGCCAGCCCCTCTCTCTGGGCCTTGGTTTCCCCACTGGTTCAATGAGGGGCTGCTGTCAATTAGGTTGGGCTCGGGGAGGCAGGCCTGGTCTCTGGGGCCTGCCATGGTGAGGCCCACCCCACTCCACCTGGTGACTCAGCCCTCACGGCCCATCTCCCCACAGGTCAACGCTGAGGGCTCCGTGGACAGTGTCTTCTCCCAGGTCTGCACCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:127868026|127868416 hsa-miR-22-5p 0 0 1
chr9:127868026|127868416 hsa-miR-22-3p 0 0 1
chr9:127868026|127868416 hsa-miR-192-5p 0 0 1
chr9:127868026|127868416 hsa-miR-192-3p 0 0 1
chr9:127868026|127868416 hsa-miR-215-5p 0 0 1
chr9:127868026|127868416 hsa-miR-215-3p 0 0 1
chr9:127868026|127868416 hsa-miR-122-5p 0 0 1
chr9:127868026|127868416 hsa-miR-122-3p 0 0 1
chr9:127868026|127868416 hsa-miR-376b-5p 0 0 1
chr9:127868026|127868416 hsa-miR-376b-3p 0 0 1
chr9:127868026|127868416 hsa-miR-558 0 0 1
chr9:127868026|127868416 hsa-miR-608 0 0 1
chr9:127868026|127868416 hsa-miR-631 1 0 1
chr9:127868026|127868416 hsa-miR-766-5p 0 0 1
chr9:127868026|127868416 hsa-miR-766-3p 0 0 1
chr9:127868026|127868416 hsa-miR-541-5p 0 0 1
chr9:127868026|127868416 hsa-miR-541-3p 0 0 1
chr9:127868026|127868416 hsa-miR-744-5p 0 0 1
chr9:127868026|127868416 hsa-miR-744-3p 0 0 1
chr9:127868026|127868416 hsa-miR-939-5p 0 0 1
chr9:127868026|127868416 hsa-miR-939-3p 0 0 1
chr9:127868026|127868416 hsa-miR-1226-5p 0 0 1
chr9:127868026|127868416 hsa-miR-1226-3p 0 0 1
chr9:127868026|127868416 hsa-miR-1203 0 0 1
chr9:127868026|127868416 hsa-miR-663b 1 0 1
chr9:127868026|127868416 hsa-miR-1253 0 0 1
chr9:127868026|127868416 hsa-miR-296-5p 0 0 1
chr9:127868026|127868416 hsa-miR-491-5p 0 1 1
chr9:127868026|127868416 hsa-miR-615-3p 0 0 1
chr9:127868026|127868416 hsa-miR-423-5p 0 0 1
chr9:127868026|127868416 hsa-miR-654-5p 0 1 1
chr9:127868026|127868416 hsa-miR-1224-3p 0 0 1
chr9:127868026|127868416 hsa-miR-331-3p 0 1 1
chr9:127868026|127868416 hsa-miR-1207-5p 0 0 1
chr9:127868026|127868416 hsa-miR-324-3p 0 0 1
chr9:127868026|127868416 hsa-miR-342-5p 0 0 1
chr9:127868026|127868416 hsa-miR-1233 0 0 1
chr9:127868026|127868416 hsa-miR-128 0 0 1
chr9:127868026|127868416 hsa-miR-376a 0 0 1
chr9:127868026|127868416 hsa-miR-768-3p 0 0 1
chr9:127868026|127868416 hsa-miR-325 1 0 0
chr9:127868026|127868416 hsa-miR-637 1 0 0
chr9:127868026|127868416 hsa-miR-663a 1 0 0
chr9:127868026|127868416 hsa-miR-762 1 1 0
chr9:127868026|127868416 hsa-miR-760 1 0 0
chr9:127868026|127868416 hsa-miR-1204 1 0 0
chr9:127868026|127868416 hsa-miR-2110 1 1 0
chr9:127868026|127868416 hsa-miR-544b 0 1 0
chr9:127868026|127868416 hsa-miR-3175 0 1 0
chr9:127868026|127868416 hsa-miR-3176 0 1 0
chr9:127868026|127868416 hsa-miR-3185 1 0 0
chr9:127868026|127868416 hsa-miR-4292 0 1 0
chr9:127868026|127868416 hsa-miR-3661 1 1 0
chr9:127868026|127868416 hsa-miR-4449 0 1 0
chr9:127868026|127868416 hsa-miR-4466 1 0 0
chr9:127868026|127868416 hsa-miR-4481 0 1 0
chr9:127868026|127868416 hsa-miR-4488 1 0 0
chr9:127868026|127868416 hsa-miR-4496 0 1 0
chr9:127868026|127868416 hsa-miR-4498 0 1 0
chr9:127868026|127868416 hsa-miR-4516 1 0 0
chr9:127868026|127868416 hsa-miR-1587 1 1 0
chr9:127868026|127868416 hsa-miR-4656 1 1 0
chr9:127868026|127868416 hsa-miR-4660 1 0 0
chr9:127868026|127868416 hsa-miR-4689 1 0 0
chr9:127868026|127868416 hsa-miR-4721 1 0 0
chr9:127868026|127868416 hsa-miR-4730 1 0 0
chr9:127868026|127868416 hsa-miR-4739 1 0 0
chr9:127868026|127868416 hsa-miR-4741 1 0 0
chr9:127868026|127868416 hsa-miR-4754 1 1 0
chr9:127868026|127868416 hsa-miR-5190 1 0 0
chr9:127868026|127868416 hsa-miR-6081 1 0 0
chr9:127868026|127868416 hsa-miR-6085 0 1 0
chr9:127868026|127868416 hsa-miR-6132 1 0 0
chr9:127868026|127868416 hsa-miR-8085 1 1 0
chr9:127868026|127868416 hsa-miR-9718 1 0 0
chr9:127868026|127868416 hsa-miR-12114 0 1 0
chr9:127868026|127868416 hsa-miR-4435 0 1 0
chr9:127868026|127868416 hsa-miR-152-5p 0 1 0
chr9:127868026|127868416 hsa-miR-6734-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6747-3p 0 1 0
chr9:127868026|127868416 hsa-miR-6765-5p 1 1 0
chr9:127868026|127868416 hsa-miR-6836-3p 0 1 0
chr9:127868026|127868416 hsa-miR-3150a-3p 0 1 0
chr9:127868026|127868416 hsa-miR-6825-5p 1 0 0
chr9:127868026|127868416 hsa-miR-210-5p 0 1 0
chr9:127868026|127868416 hsa-miR-25-5p 0 1 0
chr9:127868026|127868416 hsa-miR-486-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6799-5p 1 0 0
chr9:127868026|127868416 hsa-miR-8071 1 0 0
chr9:127868026|127868416 hsa-miR-7851-3p 0 1 0
chr9:127868026|127868416 hsa-miR-4786-5p 0 1 0
chr9:127868026|127868416 hsa-miR-6089 1 0 0
chr9:127868026|127868416 hsa-miR-6880-5p 0 1 0
chr9:127868026|127868416 hsa-miR-7160-5p 1 1 0
chr9:127868026|127868416 hsa-miR-874-5p 0 1 0
chr9:127868026|127868416 hsa-miR-6875-3p 0 1 0
chr9:127868026|127868416 hsa-miR-6741-5p 1 1 0
chr9:127868026|127868416 hsa-miR-3928-3p 1 0 0
chr9:127868026|127868416 hsa-miR-6776-5p 0 1 0
chr9:127868026|127868416 hsa-miR-6742-5p 0 1 0
chr9:127868026|127868416 hsa-miR-3151-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6768-5p 1 0 0
chr9:127868026|127868416 hsa-miR-3180-3p 1 0 0
chr9:127868026|127868416 hsa-miR-6748-5p 0 1 0
chr9:127868026|127868416 hsa-miR-6772-5p 1 0 0
chr9:127868026|127868416 hsa-miR-185-3p 0 1 0
chr9:127868026|127868416 hsa-miR-6732-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6770-5p 0 1 0
chr9:127868026|127868416 hsa-miR-6850-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6882-3p 0 1 0
chr9:127868026|127868416 hsa-miR-6786-5p 1 0 0
chr9:127868026|127868416 hsa-miR-5088-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6853-5p 1 0 0
chr9:127868026|127868416 hsa-miR-30c-2-3p 0 1 0
chr9:127868026|127868416 hsa-miR-4756-3p 0 1 0
chr9:127868026|127868416 hsa-miR-4446-3p 0 1 0
chr9:127868026|127868416 hsa-miR-4733-3p 0 1 0
chr9:127868026|127868416 hsa-miR-3616-3p 1 0 0
chr9:127868026|127868416 hsa-miR-937-5p 1 1 0
chr9:127868026|127868416 hsa-miR-3922-5p 0 1 0
chr9:127868026|127868416 hsa-miR-2114-5p 0 1 0
chr9:127868026|127868416 hsa-miR-1304-5p 0 1 0
chr9:127868026|127868416 hsa-miR-6778-3p 0 1 0
chr9:127868026|127868416 hsa-miR-216a-3p 0 1 0
chr9:127868026|127868416 hsa-miR-4649-3p 0 1 0
chr9:127868026|127868416 hsa-miR-6760-3p 0 1 0
chr9:127868026|127868416 hsa-miR-1296-3p 0 1 0
chr9:127868026|127868416 hsa-miR-3200-3p 0 1 0
chr9:127868026|127868416 hsa-miR-4714-3p 0 1 0
chr9:127868026|127868416 hsa-miR-4650-5p 0 1 0
chr9:127868026|127868416 hsa-miR-4763-3p 1 0 0
chr9:127868026|127868416 hsa-miR-6816-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6870-5p 1 0 0
chr9:127868026|127868416 hsa-miR-1343-5p 1 0 0
chr9:127868026|127868416 hsa-miR-3180 1 0 0
chr9:127868026|127868416 hsa-miR-5001-5p 1 1 0
chr9:127868026|127868416 hsa-miR-6737-5p 0 1 0
chr9:127868026|127868416 hsa-miR-6756-5p 1 1 0
chr9:127868026|127868416 hsa-miR-6813-5p 1 1 0
chr9:127868026|127868416 hsa-miR-6851-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6763-5p 0 1 0
chr9:127868026|127868416 hsa-miR-6788-5p 0 1 0
chr9:127868026|127868416 hsa-miR-3620-5p 1 1 0
chr9:127868026|127868416 hsa-miR-5196-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6780b-5p 0 1 0
chr9:127868026|127868416 hsa-miR-10396b-5p 1 0 0
chr9:127868026|127868416 hsa-miR-1237-5p 1 0 0
chr9:127868026|127868416 hsa-miR-4649-5p 1 0 0
chr9:127868026|127868416 hsa-miR-4685-5p 1 1 0
chr9:127868026|127868416 hsa-miR-4726-5p 1 0 0
chr9:127868026|127868416 hsa-miR-675-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6795-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6846-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6848-5p 1 1 0
chr9:127868026|127868416 hsa-miR-4758-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6511b-5p 1 0 0
chr9:127868026|127868416 hsa-miR-30c-1-3p 0 1 0
chr9:127868026|127868416 hsa-miR-6758-5p 0 1 0
chr9:127868026|127868416 hsa-miR-6856-5p 0 1 0
chr9:127868026|127868416 hsa-miR-10398-3p 0 1 0
chr9:127868026|127868416 hsa-miR-6724-5p 1 1 0
chr9:127868026|127868416 hsa-miR-6791-5p 1 1 0
chr9:127868026|127868416 hsa-miR-6762-5p 1 1 0
chr9:127868026|127868416 hsa-miR-6512-3p 0 1 0
chr9:127868026|127868416 hsa-miR-4676-5p 0 1 0
chr9:127868026|127868416 hsa-miR-6811-5p 1 0 0
chr9:127868026|127868416 hsa-miR-6843-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:127868026|127868416
ORF Type ORF1
Protein Length 64
Nucleotide Length 195
Protein Sequence METYYKATEPVIAFYEKRGIVRKVGPAGPGAAPGRTGSYVAPPQLTVWPQASPSLWALVSPLVQ
Nucleotide Sequence CTGGAGACCTATTACAAGGCCACAGAACCTGTCATCGCCTTCTATGAGAAACGTGGCATTGTGCGCAAGGTGGGCCCCGCGGGCCCAGGGGCAGCTCCGGGAAGAACGGGTTCCTATGTGGCTCCGCCTCAGCTCACTGTGTGGCCTCAGGCCAGCCCCTCTCTCTGGGCCTTGGTTTCCCCACTGGTTCAATGA
CircID chr9:127868026|127868416
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MVSGACHGEAHPTPPGDSALTAHLPTGQR
Nucleotide Sequence CTGGTCTCTGGGGCCTGCCATGGTGAGGCCCACCCCACTCCACCTGGTGACTCAGCCCTCACGGCCCATCTCCCCACAGGTCAACGCTGA
CircID chr9:127868026|127868416
ORF Type ORF3
Protein Length 129
Nucleotide Length 387
Protein Sequence MRRPSKSGWRPITRPQNLSSPSMRNVALCARWAPRAQGQLREERVPMWLRLSSLCGLRPAPLSGPWFPHWFNEGLLSIRLGSGRQAWSLGPAMVRPTPLHLVTQPSRPISPQVNAEGSVDSVFSQVCTH
Nucleotide Sequence ATGAGGAGACCATCAAAAAGCGGCTGGAGACCTATTACAAGGCCACAGAACCTGTCATCGCCTTCTATGAGAAACGTGGCATTGTGCGCAAGGTGGGCCCCGCGGGCCCAGGGGCAGCTCCGGGAAGAACGGGTTCCTATGTGGCTCCGCCTCAGCTCACTGTGTGGCCTCAGGCCAGCCCCTCTCTCTGGGCCTTGGTTTCCCCACTGGTTCAATGAGGGGCTGCTGTCAATTAGGTTGGGCTCGGGGAGGCAGGCCTGGTCTCTGGGGCCTGCCATGGTGAGGCCCACCCCACTCCACCTGGTGACTCAGCCCTCACGGCCCATCTCCCCACAGGTCAACGCTGAGGGCTCCGTGGACAGTGTCTTCTCCCAGGTCTGCACCCAC
CircID chr9:127868026|127868416
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MGLGFPTGSMRGCCQLGWARGGRPGLWGLPW
Nucleotide Sequence CTGGGCCTTGGTTTCCCCACTGGTTCAATGAGGGGCTGCTGTCAATTAGGTTGGGCTCGGGGAGGCAGGCCTGGTCTCTGGGGCCTGCCATGGTGA
CircID chr9:127868026|127868416
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MSHQVEWGGPHHGRPQRPGLPPRAQPN
Nucleotide Sequence CTGAGTCACCAGGTGGAGTGGGGTGGGCCTCACCATGGCAGGCCCCAGAGACCAGGCCTGCCTCCCCGAGCCCAACCTAATTGA
CircID chr9:127868026|127868416
ORF Type ORF6
Protein Length 94
Nucleotide Length 282
Protein Sequence MAGPRDQACLPEPNLIDSSPSLNQWGNQGPERGAGLRPHSELRRSHIGTRSSRSCPWARGAHLAHNATFLIEGDDRFCGLVIGLQPLFDGLLIV
Nucleotide Sequence ATGGCAGGCCCCAGAGACCAGGCCTGCCTCCCCGAGCCCAACCTAATTGACAGCAGCCCCTCATTGAACCAGTGGGGAAACCAAGGCCCAGAGAGAGGGGCTGGCCTGAGGCCACACAGTGAGCTGAGGCGGAGCCACATAGGAACCCGTTCTTCCCGGAGCTGCCCCTGGGCCCGCGGGGCCCACCTTGCGCACAATGCCACGTTTCTCATAGAAGGCGATGACAGGTTCTGTGGCCTTGTAATAGGTCTCCAGCCGCTTTTTGATGGTCTCCTCATTGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab