CircRNA Information

General Information
circRNA Basic Information
CircID chr9:127886105|127886346
Strand -
CircType exon
Host Gene ENSG00000160408.13;
Algorism CIRI2;
Sequence CTCCACAACCCCACAAATTCTCTGGCCGGGCCTCCAGACAGCTTCTACCCCCACACAATCTCTCTTTCTGGTGCTGGAAATTGAGGGGGCAACACCAAGTTCCCAGCTCCTTGGGACAGGACCCCATTATCCCAGGAGAGTGGGGAGTGATTGGGGGGTCCATTCCTGGGGCTCTGAACCAAGGCCTCATGGGAAAGGACATGTCCTTAGCCTCAGATTGACTCAGAAATACCCCCTCTACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:127886105|127886346 hsa-miR-29a-5p 0 0 1
chr9:127886105|127886346 hsa-miR-29a-3p 0 0 1
chr9:127886105|127886346 hsa-miR-29c-5p 0 0 1
chr9:127886105|127886346 hsa-miR-29c-3p 0 0 1
chr9:127886105|127886346 hsa-miR-34b-5p 0 0 1
chr9:127886105|127886346 hsa-miR-34b-3p 0 0 1
chr9:127886105|127886346 hsa-miR-626 0 0 1
chr9:127886105|127886346 hsa-miR-650 0 0 1
chr9:127886105|127886346 hsa-miR-659-5p 0 0 1
chr9:127886105|127886346 hsa-miR-659-3p 0 0 1
chr9:127886105|127886346 hsa-miR-708-5p 0 0 1
chr9:127886105|127886346 hsa-miR-708-3p 0 0 1
chr9:127886105|127886346 hsa-miR-1231 0 1 1
chr9:127886105|127886346 hsa-miR-1292-5p 0 0 1
chr9:127886105|127886346 hsa-miR-1292-3p 0 0 1
chr9:127886105|127886346 hsa-miR-1225-3p 0 1 1
chr9:127886105|127886346 hsa-miR-491-5p 1 0 1
chr9:127886105|127886346 hsa-miR-615-5p 0 1 1
chr9:127886105|127886346 hsa-miR-485-5p 0 0 1
chr9:127886105|127886346 hsa-miR-28-5p 0 0 1
chr9:127886105|127886346 hsa-miR-338-3p 0 0 1
chr9:127886105|127886346 hsa-miR-483-3p 0 0 1
chr9:127886105|127886346 hsa-miR-644 0 0 1
chr9:127886105|127886346 hsa-miR-516b 0 0 1
chr9:127886105|127886346 hsa-miR-147 0 0 1
chr9:127886105|127886346 hsa-miR-29b 0 0 1
chr9:127886105|127886346 hsa-miR-608 1 0 0
chr9:127886105|127886346 hsa-miR-637 1 0 0
chr9:127886105|127886346 hsa-miR-298 1 0 0
chr9:127886105|127886346 hsa-miR-663b 1 0 0
chr9:127886105|127886346 hsa-miR-1275 1 0 0
chr9:127886105|127886346 hsa-miR-3132 1 1 0
chr9:127886105|127886346 hsa-miR-3178 1 0 0
chr9:127886105|127886346 hsa-miR-4311 0 1 0
chr9:127886105|127886346 hsa-miR-4266 1 0 0
chr9:127886105|127886346 hsa-miR-4286 0 1 0
chr9:127886105|127886346 hsa-miR-3911 1 0 0
chr9:127886105|127886346 hsa-miR-4447 1 0 0
chr9:127886105|127886346 hsa-miR-4471 0 1 0
chr9:127886105|127886346 hsa-miR-4488 1 0 0
chr9:127886105|127886346 hsa-miR-4521 0 1 0
chr9:127886105|127886346 hsa-miR-4651 1 0 0
chr9:127886105|127886346 hsa-miR-4705 0 1 0
chr9:127886105|127886346 hsa-miR-4734 1 0 0
chr9:127886105|127886346 hsa-miR-5739 1 0 0
chr9:127886105|127886346 hsa-miR-6077 1 0 0
chr9:127886105|127886346 hsa-miR-6086 1 0 0
chr9:127886105|127886346 hsa-miR-6126 1 0 0
chr9:127886105|127886346 hsa-miR-6127 1 0 0
chr9:127886105|127886346 hsa-miR-6745 1 0 0
chr9:127886105|127886346 hsa-miR-12119 1 1 0
chr9:127886105|127886346 hsa-miR-135a-3p 1 0 0
chr9:127886105|127886346 hsa-miR-4731-5p 1 0 0
chr9:127886105|127886346 hsa-miR-671-5p 1 0 0
chr9:127886105|127886346 hsa-miR-6825-5p 1 0 0
chr9:127886105|127886346 hsa-miR-6089 1 0 0
chr9:127886105|127886346 hsa-miR-6757-5p 1 0 0
chr9:127886105|127886346 hsa-miR-296-5p 0 1 0
chr9:127886105|127886346 hsa-miR-770-5p 1 0 0
chr9:127886105|127886346 hsa-miR-197-5p 1 1 0
chr9:127886105|127886346 hsa-miR-6742-5p 1 0 0
chr9:127886105|127886346 hsa-miR-3180-3p 1 0 0
chr9:127886105|127886346 hsa-miR-6796-5p 1 1 0
chr9:127886105|127886346 hsa-miR-6732-5p 0 1 0
chr9:127886105|127886346 hsa-miR-3190-3p 1 0 0
chr9:127886105|127886346 hsa-miR-6760-5p 1 0 0
chr9:127886105|127886346 hsa-miR-6782-5p 1 0 0
chr9:127886105|127886346 hsa-miR-5008-5p 1 0 0
chr9:127886105|127886346 hsa-miR-6835-5p 1 1 0
chr9:127886105|127886346 hsa-miR-7109-5p 1 0 0
chr9:127886105|127886346 hsa-miR-3127-5p 0 1 0
chr9:127886105|127886346 hsa-miR-4650-3p 1 0 0
chr9:127886105|127886346 hsa-miR-6771-5p 1 0 0
chr9:127886105|127886346 hsa-miR-4743-5p 1 0 0
chr9:127886105|127886346 hsa-miR-937-5p 1 1 0
chr9:127886105|127886346 hsa-miR-6781-5p 1 0 0
chr9:127886105|127886346 hsa-miR-339-5p 0 1 0
chr9:127886105|127886346 hsa-miR-3065-3p 1 1 0
chr9:127886105|127886346 hsa-miR-6859-3p 0 1 0
chr9:127886105|127886346 hsa-miR-6777-3p 0 1 0
chr9:127886105|127886346 hsa-miR-6737-5p 1 0 0
chr9:127886105|127886346 hsa-miR-6752-5p 1 0 0
chr9:127886105|127886346 hsa-miR-6756-5p 1 0 0
chr9:127886105|127886346 hsa-miR-6803-5p 1 1 0
chr9:127886105|127886346 hsa-miR-6819-5p 1 0 0
chr9:127886105|127886346 hsa-miR-6842-5p 1 0 0
chr9:127886105|127886346 hsa-miR-7107-5p 1 0 0
chr9:127886105|127886346 hsa-miR-7110-5p 1 0 0
chr9:127886105|127886346 hsa-miR-10401-5p 1 0 0
chr9:127886105|127886346 hsa-miR-6751-5p 1 1 0
chr9:127886105|127886346 hsa-miR-7111-5p 1 0 0
chr9:127886105|127886346 hsa-miR-10526-3p 1 0 0
chr9:127886105|127886346 hsa-miR-4726-5p 1 0 0
chr9:127886105|127886346 hsa-miR-4745-5p 1 0 0
chr9:127886105|127886346 hsa-miR-6831-5p 1 0 0
chr9:127886105|127886346 hsa-miR-4758-5p 1 0 0
chr9:127886105|127886346 hsa-miR-3198 1 0 0
chr9:127886105|127886346 hsa-miR-6856-5p 1 0 0
chr9:127886105|127886346 hsa-miR-6855-5p 0 1 0
chr9:127886105|127886346 hsa-miR-6791-3p 1 1 0
chr9:127886105|127886346 hsa-miR-4472 1 0 0
chr9:127886105|127886346 hsa-miR-6724-5p 1 0 0
chr9:127886105|127886346 hsa-miR-137-5p 0 1 0
chr9:127886105|127886346 hsa-miR-9902 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:127886105|127886346
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence MVLEIEGATPSSQLLGTGPHYPRRVGSDWGVHSWGSEPRPHGKGHVLSLRLTQKYPLY
Nucleotide Sequence CTGGTGCTGGAAATTGAGGGGGCAACACCAAGTTCCCAGCTCCTTGGGACAGGACCCCATTATCCCAGGAGAGTGGGGAGTGATTGGGGGGTCCATTCCTGGGGCTCTGAACCAAGGCCTCATGGGAAAGGACATGTCCTTAGCCTCAGATTGACTCAGAAATACCCCCTCTAC
CircID chr9:127886105|127886346
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MRGQHQVPSSLGQDPIIPGEWGVIGGSIPGALNQGLMGKDMSLASD
Nucleotide Sequence TTGAGGGGGCAACACCAAGTTCCCAGCTCCTTGGGACAGGACCCCATTATCCCAGGAGAGTGGGGAGTGATTGGGGGGTCCATTCCTGGGGCTCTGAACCAAGGCCTCATGGGAAAGGACATGTCCTTAGCCTCAGATTGA
CircID chr9:127886105|127886346
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MVQSPRNGPPNHSPLSWDNGVLSQGAGNLVLPPQFPAPEREIVWG
Nucleotide Sequence TTGGTTCAGAGCCCCAGGAATGGACCCCCCAATCACTCCCCACTCTCCTGGGATAATGGGGTCCTGTCCCAAGGAGCTGGGAACTTGGTGTTGCCCCCTCAATTTCCAGCACCAGAAAGAGAGATTGTGTGGGGGTAG
CircID chr9:127886105|127886346
ORF Type ORF4
Protein Length 75
Nucleotide Length 225
Protein Sequence MSQSEAKDMSFPMRPWFRAPGMDPPITPHSPGIMGSCPKELGTWCCPLNFQHQKERLCGGRSCLEARPENLWGCG
Nucleotide Sequence CTGAGTCAATCTGAGGCTAAGGACATGTCCTTTCCCATGAGGCCTTGGTTCAGAGCCCCAGGAATGGACCCCCCAATCACTCCCCACTCTCCTGGGATAATGGGGTCCTGTCCCAAGGAGCTGGGAACTTGGTGTTGCCCCCTCAATTTCCAGCACCAGAAAGAGAGATTGTGTGGGGGTAGAAGCTGTCTGGAGGCCCGGCCAGAGAATTTGTGGGGTTGTGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab