CircRNA Information

General Information
circRNA Basic Information
CircID chr9:128063515|128063700
Strand +
CircType exon
Host Gene ENSG00000171169.8;
Algorism CIRI2;
Sequence CTGCATGTGAAGGAGATCGCACAGCACCTGGAACAGCAGAACGACCTACTGCAGATGATCCGCCGCTCCCAGGAAGTGCAGGCCTGTGCCCAGGAGCGCCAGGCCCAGGCCATGGAGGGCACACAGGCTGCCCTGAGCGTCCTCATCCAGGTCCTCCGGCCTATGATCAAAGATTTCCGCCGCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:128063515|128063700 hsa-miR-23a-5p 0 0 1
chr9:128063515|128063700 hsa-miR-23a-3p 0 0 1
chr9:128063515|128063700 hsa-miR-205-5p 0 0 1
chr9:128063515|128063700 hsa-miR-205-3p 0 0 1
chr9:128063515|128063700 hsa-miR-23b-5p 0 0 1
chr9:128063515|128063700 hsa-miR-23b-3p 0 0 1
chr9:128063515|128063700 hsa-miR-492 0 0 1
chr9:128063515|128063700 hsa-miR-612 1 0 1
chr9:128063515|128063700 hsa-miR-619-5p 0 0 1
chr9:128063515|128063700 hsa-miR-619-3p 0 0 1
chr9:128063515|128063700 hsa-miR-631 0 0 1
chr9:128063515|128063700 hsa-miR-661 1 0 1
chr9:128063515|128063700 hsa-miR-920 1 0 1
chr9:128063515|128063700 hsa-miR-1205 0 0 1
chr9:128063515|128063700 hsa-miR-1255a 0 0 1
chr9:128063515|128063700 hsa-miR-1266-5p 0 0 1
chr9:128063515|128063700 hsa-miR-1266-3p 0 0 1
chr9:128063515|128063700 hsa-miR-1224-5p 0 0 1
chr9:128063515|128063700 hsa-miR-1184 0 0 1
chr9:128063515|128063700 hsa-miR-574-3p 0 0 1
chr9:128063515|128063700 hsa-miR-1255b 0 0 1
chr9:128063515|128063700 hsa-miR-1285 0 0 1
chr9:128063515|128063700 hsa-miR-1295 0 0 1
chr9:128063515|128063700 hsa-miR-1826 0 0 1
chr9:128063515|128063700 hsa-miR-637 1 0 0
chr9:128063515|128063700 hsa-miR-1295a 1 0 0
chr9:128063515|128063700 hsa-miR-2861 1 0 0
chr9:128063515|128063700 hsa-miR-3178 1 0 0
chr9:128063515|128063700 hsa-miR-4321 1 0 0
chr9:128063515|128063700 hsa-miR-3621 1 0 0
chr9:128063515|128063700 hsa-miR-4449 1 0 0
chr9:128063515|128063700 hsa-miR-4467 1 0 0
chr9:128063515|128063700 hsa-miR-3960 1 0 0
chr9:128063515|128063700 hsa-miR-4689 1 0 0
chr9:128063515|128063700 hsa-miR-4767 1 0 0
chr9:128063515|128063700 hsa-miR-8072 1 0 0
chr9:128063515|128063700 hsa-miR-8089 1 0 0
chr9:128063515|128063700 hsa-miR-150-3p 1 0 0
chr9:128063515|128063700 hsa-miR-6089 1 0 0
chr9:128063515|128063700 hsa-miR-7847-3p 1 0 0
chr9:128063515|128063700 hsa-miR-4722-5p 1 0 0
chr9:128063515|128063700 hsa-miR-6820-5p 1 0 0
chr9:128063515|128063700 hsa-miR-6727-5p 1 0 0
chr9:128063515|128063700 hsa-miR-503-5p 1 0 0
chr9:128063515|128063700 hsa-miR-3180-3p 1 0 0
chr9:128063515|128063700 hsa-miR-6782-5p 1 0 0
chr9:128063515|128063700 hsa-miR-1226-5p 1 0 0
chr9:128063515|128063700 hsa-miR-885-3p 1 0 0
chr9:128063515|128063700 hsa-miR-6749-5p 1 0 0
chr9:128063515|128063700 hsa-miR-4743-5p 1 0 0
chr9:128063515|128063700 hsa-miR-6781-5p 1 0 0
chr9:128063515|128063700 hsa-miR-194-3p 1 0 0
chr9:128063515|128063700 hsa-miR-1225-5p 1 0 0
chr9:128063515|128063700 hsa-miR-3619-3p 1 0 0
chr9:128063515|128063700 hsa-miR-10400-5p 1 0 0
chr9:128063515|128063700 hsa-miR-4763-3p 1 0 0
chr9:128063515|128063700 hsa-miR-6787-5p 1 0 0
chr9:128063515|128063700 hsa-miR-1343-5p 1 0 0
chr9:128063515|128063700 hsa-miR-3180 1 0 0
chr9:128063515|128063700 hsa-miR-6726-5p 1 0 0
chr9:128063515|128063700 hsa-miR-7107-5p 1 0 0
chr9:128063515|128063700 hsa-miR-6779-5p 1 0 0
chr9:128063515|128063700 hsa-miR-3620-5p 1 0 0
chr9:128063515|128063700 hsa-miR-5189-5p 1 0 0
chr9:128063515|128063700 hsa-miR-1237-5p 1 0 0
chr9:128063515|128063700 hsa-miR-4632-5p 1 0 0
chr9:128063515|128063700 hsa-miR-4726-5p 1 0 0
chr9:128063515|128063700 hsa-miR-6729-5p 1 0 0
chr9:128063515|128063700 hsa-miR-6795-5p 1 0 0
chr9:128063515|128063700 hsa-miR-6887-5p 1 0 0
chr9:128063515|128063700 hsa-miR-6736-5p 1 0 0
chr9:128063515|128063700 hsa-miR-6785-5p 1 0 0
chr9:128063515|128063700 hsa-miR-363-5p 1 0 0
chr9:128063515|128063700 hsa-miR-6874-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:128063515|128063700
ORF Type ORF1
Protein Length 62
Nucleotide Length 186
Protein Sequence LHVKEIAQHLEQQNDLLQMIRRSQEVQACAQERQAQAMEGTQAALSVLIQVLRPMIKDFRRY
Nucleotide Sequence CTGCATGTGAAGGAGATCGCACAGCACCTGGAACAGCAGAACGACCTACTGCAGATGATCCGCCGCTCCCAGGAAGTGCAGGCCTGTGCCCAGGAGCGCCAGGCCCAGGCCATGGAGGGCACACAGGCTGCCCTGAGCGTCCTCATCCAGGTCCTCCGGCCTATGATCAAAGATTTCCGCCGCTAC
CircID chr9:128063515|128063700
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MCPGAPGPGHGGHTGCPERPHPGPPAYDQRFPPL
Nucleotide Sequence CTGTGCCCAGGAGCGCCAGGCCCAGGCCATGGAGGGCACACAGGCTGCCCTGAGCGTCCTCATCCAGGTCCTCCGGCCTATGATCAAAGATTTCCGCCGCTA
CircID chr9:128063515|128063700
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MDEDAQGSLCALHGLGLALLGTGLHFLGAADHLQ
Nucleotide Sequence CTGGATGAGGACGCTCAGGGCAGCCTGTGTGCCCTCCATGGCCTGGGCCTGGCGCTCCTGGGCACAGGCCTGCACTTCCTGGGAGCGGCGGATCATCTGCAGTAG
CircID chr9:128063515|128063700
ORF Type ORF4
Protein Length 56
Nucleotide Length 168
Protein Sequence MIIGRRTWMRTLRAACVPSMAWAWRSWAQACTSWERRIICSRSFCCSRCCAISFTC
Nucleotide Sequence TTGATCATAGGCCGGAGGACCTGGATGAGGACGCTCAGGGCAGCCTGTGTGCCCTCCATGGCCTGGGCCTGGCGCTCCTGGGCACAGGCCTGCACTTCCTGGGAGCGGCGGATCATCTGCAGTAGGTCGTTCTGCTGTTCCAGGTGCTGTGCGATCTCCTTCACATGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab