CircRNA Information

General Information
circRNA Basic Information
CircID chr9:128149474|128149636
Strand -
CircType exon
Host Gene ENSG00000148346.10;
Algorism CIRI2;
Sequence CCCTGCCAGGCCCAGCAGCCACCACAGCGCCTGCTTCCTCGGCCCTGAAATCATGCCCCTAGGTCTCCTGTGGCTGGGCCTAGCCCTGTTGGGGGCTCTGCATGCCCAGGCCCAGGACTCCACCTCAGACCTGATCCCAGCCCCACCTCTGAGCAAGGTCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:128149474|128149636 hsa-miR-604 0 0 1
chr9:128149474|128149636 hsa-miR-612 1 0 1
chr9:128149474|128149636 hsa-miR-638 1 0 1
chr9:128149474|128149636 hsa-miR-647 0 0 1
chr9:128149474|128149636 hsa-miR-661 0 0 1
chr9:128149474|128149636 hsa-miR-1178-5p 0 0 1
chr9:128149474|128149636 hsa-miR-1178-3p 0 0 1
chr9:128149474|128149636 hsa-miR-1225-3p 0 0 1
chr9:128149474|128149636 hsa-miR-769-5p 0 0 1
chr9:128149474|128149636 hsa-miR-1289 0 0 1
chr9:128149474|128149636 hsa-miR-1207-5p 1 0 1
chr9:128149474|128149636 hsa-miR-769-3p 1 0 1
chr9:128149474|128149636 hsa-miR-450b-3p 0 0 1
chr9:128149474|128149636 hsa-miR-1285 0 0 1
chr9:128149474|128149636 hsa-miR-608 1 0 0
chr9:128149474|128149636 hsa-miR-637 1 0 0
chr9:128149474|128149636 hsa-miR-762 1 0 0
chr9:128149474|128149636 hsa-miR-940 1 0 0
chr9:128149474|128149636 hsa-miR-1258 1 0 0
chr9:128149474|128149636 hsa-miR-1268a 1 0 0
chr9:128149474|128149636 hsa-miR-1538 1 0 0
chr9:128149474|128149636 hsa-miR-2861 1 0 0
chr9:128149474|128149636 hsa-miR-3131 1 0 0
chr9:128149474|128149636 hsa-miR-4257 1 0 0
chr9:128149474|128149636 hsa-miR-4253 1 0 0
chr9:128149474|128149636 hsa-miR-3652 1 0 0
chr9:128149474|128149636 hsa-miR-3945 1 0 0
chr9:128149474|128149636 hsa-miR-1268b 1 0 0
chr9:128149474|128149636 hsa-miR-4507 1 0 0
chr9:128149474|128149636 hsa-miR-4510 1 0 0
chr9:128149474|128149636 hsa-miR-1587 1 0 0
chr9:128149474|128149636 hsa-miR-4651 1 0 0
chr9:128149474|128149636 hsa-miR-4656 1 0 0
chr9:128149474|128149636 hsa-miR-4688 1 0 0
chr9:128149474|128149636 hsa-miR-4734 1 0 0
chr9:128149474|128149636 hsa-miR-4739 1 0 0
chr9:128149474|128149636 hsa-miR-4741 1 0 0
chr9:128149474|128149636 hsa-miR-4767 1 0 0
chr9:128149474|128149636 hsa-miR-5787 1 0 0
chr9:128149474|128149636 hsa-miR-6069 1 0 0
chr9:128149474|128149636 hsa-miR-6085 1 0 0
chr9:128149474|128149636 hsa-miR-6127 1 0 0
chr9:128149474|128149636 hsa-miR-6133 1 0 0
chr9:128149474|128149636 hsa-miR-8089 1 0 0
chr9:128149474|128149636 hsa-miR-92a-1-5p 1 0 0
chr9:128149474|128149636 hsa-miR-7155-5p 1 0 0
chr9:128149474|128149636 hsa-miR-4433a-3p 1 0 0
chr9:128149474|128149636 hsa-miR-6765-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6799-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6089 1 0 0
chr9:128149474|128149636 hsa-miR-6880-5p 1 0 0
chr9:128149474|128149636 hsa-miR-4695-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6746-5p 1 0 0
chr9:128149474|128149636 hsa-miR-4722-5p 1 0 0
chr9:128149474|128149636 hsa-miR-7160-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6727-5p 1 0 0
chr9:128149474|128149636 hsa-miR-3622b-5p 1 0 0
chr9:128149474|128149636 hsa-miR-4655-5p 1 0 0
chr9:128149474|128149636 hsa-miR-197-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6742-5p 1 0 0
chr9:128149474|128149636 hsa-miR-3151-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6881-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6782-5p 1 0 0
chr9:128149474|128149636 hsa-miR-3934-3p 1 0 0
chr9:128149474|128149636 hsa-miR-6786-5p 1 0 0
chr9:128149474|128149636 hsa-miR-1226-5p 1 0 0
chr9:128149474|128149636 hsa-miR-4640-5p 1 0 0
chr9:128149474|128149636 hsa-miR-4690-5p 1 0 0
chr9:128149474|128149636 hsa-miR-3616-3p 1 0 0
chr9:128149474|128149636 hsa-miR-6824-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6789-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6781-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6877-5p 1 0 0
chr9:128149474|128149636 hsa-miR-664b-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6792-5p 1 0 0
chr9:128149474|128149636 hsa-miR-3200-3p 1 0 0
chr9:128149474|128149636 hsa-miR-4763-3p 1 0 0
chr9:128149474|128149636 hsa-miR-6787-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6812-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6816-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6893-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6775-5p 1 0 0
chr9:128149474|128149636 hsa-miR-5001-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6726-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6743-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6756-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6803-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6813-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6819-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6851-5p 1 0 0
chr9:128149474|128149636 hsa-miR-1249-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6722-3p 1 0 0
chr9:128149474|128149636 hsa-miR-6751-5p 1 0 0
chr9:128149474|128149636 hsa-miR-3620-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6780b-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6836-5p 1 0 0
chr9:128149474|128149636 hsa-miR-10396b-5p 1 0 0
chr9:128149474|128149636 hsa-miR-328-5p 1 0 0
chr9:128149474|128149636 hsa-miR-4649-5p 1 0 0
chr9:128149474|128149636 hsa-miR-4745-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6729-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6735-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6846-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6848-5p 1 0 0
chr9:128149474|128149636 hsa-miR-1266-5p 1 0 0
chr9:128149474|128149636 hsa-miR-365b-5p 1 0 0
chr9:128149474|128149636 hsa-miR-3198 1 0 0
chr9:128149474|128149636 hsa-miR-3940-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6855-5p 1 0 0
chr9:128149474|128149636 hsa-miR-4646-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6750-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6724-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6791-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6762-5p 1 0 0
chr9:128149474|128149636 hsa-miR-5009-5p 1 0 0
chr9:128149474|128149636 hsa-miR-6837-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:128149474|128149636
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MPLGLLWLGLALLGALHAQAQDSTSDLIPAPPLSKVP
Nucleotide Sequence ATGCCCCTAGGTCTCCTGTGGCTGGGCCTAGCCCTGTTGGGGGCTCTGCATGCCCAGGCCCAGGACTCCACCTCAGACCTGATCCCAGCCCCACCTCTGAGCAAGGTCCCT
CircID chr9:128149474|128149636
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MLRGGAGIRSEVESWAWACRAPNRARPSHRRPRGMISGPRKQALWWLLGLAG
Nucleotide Sequence TTGCTCAGAGGTGGGGCTGGGATCAGGTCTGAGGTGGAGTCCTGGGCCTGGGCATGCAGAGCCCCCAACAGGGCTAGGCCCAGCCACAGGAGACCTAGGGGCATGATTTCAGGGCCGAGGAAGCAGGCGCTGTGGTGGCTGCTGGGCCTGGCAGGG
CircID chr9:128149474|128149636
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MGSGLRWSPGPGHAEPPTGLGPATGDLGA
Nucleotide Sequence CTGGGATCAGGTCTGAGGTGGAGTCCTGGGCCTGGGCATGCAGAGCCCCCAACAGGGCTAGGCCCAGCCACAGGAGACCTAGGGGCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab