CircRNA Information

General Information
circRNA Basic Information
CircID chr9:128257980|128258135
Strand -
CircType exon
Host Gene ENSG00000167110.15;
Algorism CIRI2;
Sequence CTGCAGCTTCTCCATGGCCCCCTGCAGGGCCCGGTGGGTCTCCCCACACACAGAATCACCCCCGGTCCCTGGGGCTGGGGCTGCTGCCTCAGGCTCCTTCTGGGCCGAGGCCAGCAGGTGAGCCAGGCGCCGGCAGCGCACCCTTTGCTCCTTCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:128257980|128258135 hsa-miR-149-5p 0 0 1
chr9:128257980|128258135 hsa-miR-149-3p 0 0 1
chr9:128257980|128258135 hsa-miR-370-5p 0 0 1
chr9:128257980|128258135 hsa-miR-370-3p 0 0 1
chr9:128257980|128258135 hsa-miR-939-5p 0 0 1
chr9:128257980|128258135 hsa-miR-939-3p 0 0 1
chr9:128257980|128258135 hsa-miR-1205 0 0 1
chr9:128257980|128258135 hsa-miR-1291 0 0 1
chr9:128257980|128258135 hsa-miR-1252-5p 0 0 1
chr9:128257980|128258135 hsa-miR-1252-3p 0 0 1
chr9:128257980|128258135 hsa-miR-1827 0 1 1
chr9:128257980|128258135 hsa-miR-491-5p 0 1 1
chr9:128257980|128258135 hsa-miR-566 0 0 1
chr9:128257980|128258135 hsa-miR-1280 0 0 1
chr9:128257980|128258135 hsa-miR-644 0 0 1
chr9:128257980|128258135 hsa-miR-24 0 0 1
chr9:128257980|128258135 hsa-miR-147 0 0 1
chr9:128257980|128258135 hsa-miR-637 1 0 0
chr9:128257980|128258135 hsa-miR-638 1 0 0
chr9:128257980|128258135 hsa-miR-650 0 1 0
chr9:128257980|128258135 hsa-miR-2861 1 0 0
chr9:128257980|128258135 hsa-miR-3176 0 1 0
chr9:128257980|128258135 hsa-miR-4323 0 1 0
chr9:128257980|128258135 hsa-miR-4466 1 0 0
chr9:128257980|128258135 hsa-miR-4533 1 0 0
chr9:128257980|128258135 hsa-miR-4706 1 0 0
chr9:128257980|128258135 hsa-miR-6075 0 1 0
chr9:128257980|128258135 hsa-miR-6081 1 0 0
chr9:128257980|128258135 hsa-miR-6129 1 0 0
chr9:128257980|128258135 hsa-miR-4665-3p 1 0 0
chr9:128257980|128258135 hsa-miR-3150a-3p 0 1 0
chr9:128257980|128258135 hsa-miR-3692-5p 0 1 0
chr9:128257980|128258135 hsa-miR-6089 1 0 0
chr9:128257980|128258135 hsa-miR-769-5p 0 1 0
chr9:128257980|128258135 hsa-miR-6867-5p 0 1 0
chr9:128257980|128258135 hsa-miR-874-5p 0 1 0
chr9:128257980|128258135 hsa-miR-4655-5p 0 1 0
chr9:128257980|128258135 hsa-miR-6716-5p 1 0 0
chr9:128257980|128258135 hsa-miR-6805-5p 0 1 0
chr9:128257980|128258135 hsa-miR-6798-5p 1 1 0
chr9:128257980|128258135 hsa-miR-6765-3p 1 0 0
chr9:128257980|128258135 hsa-miR-4640-5p 0 1 0
chr9:128257980|128258135 hsa-miR-6749-5p 1 0 0
chr9:128257980|128258135 hsa-miR-1180-5p 0 1 0
chr9:128257980|128258135 hsa-miR-4649-3p 0 1 0
chr9:128257980|128258135 hsa-miR-181d-3p 0 1 0
chr9:128257980|128258135 hsa-miR-6816-5p 1 0 0
chr9:128257980|128258135 hsa-miR-1343-5p 1 0 0
chr9:128257980|128258135 hsa-miR-6752-5p 1 0 0
chr9:128257980|128258135 hsa-miR-6803-5p 1 0 0
chr9:128257980|128258135 hsa-miR-6842-5p 0 1 0
chr9:128257980|128258135 hsa-miR-10401-5p 0 1 0
chr9:128257980|128258135 hsa-miR-6751-5p 0 1 0
chr9:128257980|128258135 hsa-miR-1237-5p 1 0 0
chr9:128257980|128258135 hsa-miR-1909-3p 1 0 0
chr9:128257980|128258135 hsa-miR-328-5p 1 1 0
chr9:128257980|128258135 hsa-miR-4726-5p 1 0 0
chr9:128257980|128258135 hsa-miR-6795-5p 1 0 0
chr9:128257980|128258135 hsa-miR-6848-5p 1 0 0
chr9:128257980|128258135 hsa-miR-6887-5p 1 0 0
chr9:128257980|128258135 hsa-miR-10396a-3p 1 0 0
chr9:128257980|128258135 hsa-miR-10396b-3p 1 1 0
chr9:128257980|128258135 hsa-miR-6799-3p 0 1 0
chr9:128257980|128258135 hsa-miR-6750-5p 1 0 0
chr9:128257980|128258135 hsa-miR-6724-5p 1 1 0
chr9:128257980|128258135 hsa-miR-6762-5p 0 1 0
chr9:128257980|128258135 hsa-miR-6893-3p 0 1 0
chr9:128257980|128258135 hsa-miR-7114-3p 0 1 0
chr9:128257980|128258135 hsa-miR-10394-5p 0 1 0
chr9:128257980|128258135 hsa-miR-6764-5p 0 1 0
chr9:128257980|128258135 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:128257980|128258135
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence LQLLHGPLQGPVGLPTHRITPGPWGWGCCLRLLLGRGQQVSQAPAAHPLLLQ
Nucleotide Sequence CTGCAGCTTCTCCATGGCCCCCTGCAGGGCCCGGTGGGTCTCCCCACACACAGAATCACCCCCGGTCCCTGGGGCTGGGGCTGCTGCCTCAGGCTCCTTCTGGGCCGAGGCCAGCAGGTGAGCCAGGCGCCGGCAGCGCACCCTTTGCTCCTTCAG
CircID chr9:128257980|128258135
ORF Type ORF2
Protein Length 35
Nucleotide Length 108
Protein Sequence MAPCRARWVSPHTESPPVPGAGAAASGSFWAEASR
Nucleotide Sequence ATGGCCCCCTGCAGGGCCCGGTGGGTCTCCCCACACACAGAATCACCCCCGGTCCCTGGGGCTGGGGCTGCTGCCTCAGGCTCCTTCTGGGCCGAGGCCAGCAGGTGA
CircID chr9:128257980|128258135
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MGLGLLPQAPSGPRPAGEPGAGSAPFAPS
Nucleotide Sequence CTGGGGCTGGGGCTGCTGCCTCAGGCTCCTTCTGGGCCGAGGCCAGCAGGTGAGCCAGGCGCCGGCAGCGCACCCTTTGCTCCTTCA
CircID chr9:128257980|128258135
ORF Type ORF4
Protein Length 52
Nucleotide Length 156
Protein Sequence LKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGETHRALQGAMEKLQ
Nucleotide Sequence CTGAAGGAGCAAAGGGTGCGCTGCCGGCGCCTGGCTCACCTGCTGGCCTCGGCCCAGAAGGAGCCTGAGGCAGCAGCCCCAGCCCCAGGGACCGGGGGTGATTCTGTGTGTGGGGAGACCCACCGGGCCCTGCAGGGGGCCATGGAGAAGCTGCAG
CircID chr9:128257980|128258135
ORF Type ORF5
Protein Length 30
Nucleotide Length 90
Protein Sequence MRQQPQPQGPGVILCVGRPTGPCRGPWRSC
Nucleotide Sequence CTGAGGCAGCAGCCCCAGCCCCAGGGACCGGGGGTGATTCTGTGTGTGGGGAGACCCACCGGGCCCTGCAGGGGGCCATGGAGAAGCTGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab