CircRNA Information

General Information
circRNA Basic Information
CircID chr9:128288785|128288898
Strand +
CircType exon
Host Gene ENSG00000175854.10;
Algorism CIRI2;
Sequence GCCCCTTCCTCCCTGCCCGCCTCTTCTCTAGCCTCCTCCTGATTGGGCTTGGGCTCTCTAGAAAAGTGCTTCTGGCATTGTCTCGCTGGAAACTCTGTAGGTGTGCTGGTTGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:128288785|128288898 hsa-miR-634 0 1 1
chr9:128288785|128288898 hsa-miR-765 0 0 1
chr9:128288785|128288898 hsa-miR-1228-5p 0 0 1
chr9:128288785|128288898 hsa-miR-1228-3p 0 0 1
chr9:128288785|128288898 hsa-miR-1253 0 0 1
chr9:128288785|128288898 hsa-miR-1321 0 0 1
chr9:128288785|128288898 hsa-miR-1207-5p 0 1 1
chr9:128288785|128288898 hsa-miR-518d-5p 0 0 1
chr9:128288785|128288898 hsa-miR-519b-5p 0 1 1
chr9:128288785|128288898 hsa-miR-519c-5p 0 1 1
chr9:128288785|128288898 hsa-miR-520c-5p 0 0 1
chr9:128288785|128288898 hsa-miR-526a 0 0 1
chr9:128288785|128288898 hsa-miR-3132 1 0 0
chr9:128288785|128288898 hsa-miR-3141 1 0 0
chr9:128288785|128288898 hsa-miR-3154 1 0 0
chr9:128288785|128288898 hsa-miR-3196 1 0 0
chr9:128288785|128288898 hsa-miR-3197 1 0 0
chr9:128288785|128288898 hsa-miR-4270 0 1 0
chr9:128288785|128288898 hsa-miR-4430 1 0 0
chr9:128288785|128288898 hsa-miR-4441 0 1 0
chr9:128288785|128288898 hsa-miR-4466 1 0 0
chr9:128288785|128288898 hsa-miR-4498 1 0 0
chr9:128288785|128288898 hsa-miR-4516 1 0 0
chr9:128288785|128288898 hsa-miR-4688 1 0 0
chr9:128288785|128288898 hsa-miR-4689 1 0 0
chr9:128288785|128288898 hsa-miR-4706 0 1 0
chr9:128288785|128288898 hsa-miR-4739 1 1 0
chr9:128288785|128288898 hsa-miR-6124 1 0 0
chr9:128288785|128288898 hsa-miR-6165 1 0 0
chr9:128288785|128288898 hsa-miR-8072 1 0 0
chr9:128288785|128288898 hsa-miR-4433b-3p 1 0 0
chr9:128288785|128288898 hsa-miR-4433a-3p 1 0 0
chr9:128288785|128288898 hsa-miR-6765-5p 1 1 0
chr9:128288785|128288898 hsa-miR-671-5p 1 0 0
chr9:128288785|128288898 hsa-miR-7106-5p 0 1 0
chr9:128288785|128288898 hsa-miR-6894-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6089 1 0 0
chr9:128288785|128288898 hsa-miR-6880-5p 1 0 0
chr9:128288785|128288898 hsa-miR-4695-5p 1 1 0
chr9:128288785|128288898 hsa-miR-6746-5p 1 0 0
chr9:128288785|128288898 hsa-miR-197-5p 1 0 0
chr9:128288785|128288898 hsa-miR-3180-3p 1 0 0
chr9:128288785|128288898 hsa-miR-6732-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6798-5p 1 0 0
chr9:128288785|128288898 hsa-miR-3126-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6771-5p 1 0 0
chr9:128288785|128288898 hsa-miR-4690-5p 1 0 0
chr9:128288785|128288898 hsa-miR-877-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6789-5p 1 0 0
chr9:128288785|128288898 hsa-miR-3162-5p 1 1 0
chr9:128288785|128288898 hsa-miR-7112-5p 0 1 0
chr9:128288785|128288898 hsa-miR-5003-3p 0 1 0
chr9:128288785|128288898 hsa-miR-4738-5p 0 1 0
chr9:128288785|128288898 hsa-miR-10400-5p 1 0 0
chr9:128288785|128288898 hsa-miR-1233-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6778-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6816-5p 1 0 0
chr9:128288785|128288898 hsa-miR-3180 1 0 0
chr9:128288785|128288898 hsa-miR-6743-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6851-5p 1 0 0
chr9:128288785|128288898 hsa-miR-11181-3p 1 0 0
chr9:128288785|128288898 hsa-miR-6879-5p 0 1 0
chr9:128288785|128288898 hsa-miR-7111-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6780b-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6846-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6848-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6858-5p 1 1 0
chr9:128288785|128288898 hsa-miR-4723-5p 0 1 0
chr9:128288785|128288898 hsa-miR-6856-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6773-5p 1 0 0
chr9:128288785|128288898 hsa-miR-6785-5p 1 0 0
chr9:128288785|128288898 hsa-miR-550a-5p 1 0 0
chr9:128288785|128288898 hsa-miR-518e-5p 0 1 0
chr9:128288785|128288898 hsa-miR-519a-5p 0 1 0
chr9:128288785|128288898 hsa-miR-522-5p 0 1 0
chr9:128288785|128288898 hsa-miR-523-5p 0 1 0
chr9:128288785|128288898 hsa-miR-4722-3p 1 0 0
chr9:128288785|128288898 hsa-miR-6835-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:128288785|128288898
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MIGLGLSRKVLLALSRWKLCRCAGW
Nucleotide Sequence CTGATTGGGCTTGGGCTCTCTAGAAAAGTGCTTCTGGCATTGTCTCGCTGGAAACTCTGTAGGTGTGCTGGTTGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab