CircRNA Information

General Information
circRNA Basic Information
CircID chr9:128333809|128334057
Strand -
CircType exon
Host Gene ENSG00000167113.9;
Algorism CIRI2;
Sequence CCCGCAGGGAGCAAGCAGTACAGTGGCATTCCCAGGGGGACCAGCAGCTACCCAAGGAGAACCATGCATGAACAGTATCAGTCGTCTGGGCTCATGCTGGGATGTCGCAGTGCTCCTGTTGCAACTCCTCCCAGCCAGCCAGGTTTGCTGGGGGCCAGGCTGGGTGTCCTCACAGGAGTGAGGGCTACACCCAATTCCAAAAGCCTGAGAAGAGAGAAGTGGAGGGGGAGGCGAGTGTGTGAATAAAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:128333809|128334057 hsa-miR-22-5p 0 0 1
chr9:128333809|128334057 hsa-miR-22-3p 0 0 1
chr9:128333809|128334057 hsa-miR-377-5p 0 0 1
chr9:128333809|128334057 hsa-miR-377-3p 0 0 1
chr9:128333809|128334057 hsa-miR-452-5p 0 0 1
chr9:128333809|128334057 hsa-miR-452-3p 0 0 1
chr9:128333809|128334057 hsa-miR-484 0 0 1
chr9:128333809|128334057 hsa-miR-545-5p 0 0 1
chr9:128333809|128334057 hsa-miR-545-3p 0 0 1
chr9:128333809|128334057 hsa-miR-603 0 0 1
chr9:128333809|128334057 hsa-miR-609 0 0 1
chr9:128333809|128334057 hsa-miR-765 0 1 1
chr9:128333809|128334057 hsa-miR-942-5p 0 0 1
chr9:128333809|128334057 hsa-miR-942-3p 0 0 1
chr9:128333809|128334057 hsa-miR-1236-5p 0 0 1
chr9:128333809|128334057 hsa-miR-1236-3p 0 0 1
chr9:128333809|128334057 hsa-miR-1206 0 0 1
chr9:128333809|128334057 hsa-miR-1294 0 0 1
chr9:128333809|128334057 hsa-miR-1262 0 0 1
chr9:128333809|128334057 hsa-miR-1266-5p 0 0 1
chr9:128333809|128334057 hsa-miR-1266-3p 0 0 1
chr9:128333809|128334057 hsa-miR-1281 1 1 1
chr9:128333809|128334057 hsa-miR-1197 0 1 1
chr9:128333809|128334057 hsa-miR-1225-3p 0 0 1
chr9:128333809|128334057 hsa-miR-1224-5p 0 0 1
chr9:128333809|128334057 hsa-miR-490-3p 0 0 1
chr9:128333809|128334057 hsa-miR-1225-5p 0 0 1
chr9:128333809|128334057 hsa-miR-361-3p 0 0 1
chr9:128333809|128334057 hsa-miR-331-3p 0 0 1
chr9:128333809|128334057 hsa-miR-338-3p 0 0 1
chr9:128333809|128334057 hsa-miR-483-3p 1 0 1
chr9:128333809|128334057 hsa-miR-1233 0 0 1
chr9:128333809|128334057 hsa-miR-138 0 0 1
chr9:128333809|128334057 hsa-miR-129-3p 0 0 1
chr9:128333809|128334057 hsa-miR-661 1 0 0
chr9:128333809|128334057 hsa-miR-1913 1 0 0
chr9:128333809|128334057 hsa-miR-4297 1 0 0
chr9:128333809|128334057 hsa-miR-4268 1 0 0
chr9:128333809|128334057 hsa-miR-4469 1 0 0
chr9:128333809|128334057 hsa-miR-4505 1 0 0
chr9:128333809|128334057 hsa-miR-4706 1 0 0
chr9:128333809|128334057 hsa-miR-4739 1 1 0
chr9:128333809|128334057 hsa-miR-5193 1 0 0
chr9:128333809|128334057 hsa-miR-6749-3p 1 0 0
chr9:128333809|128334057 hsa-miR-92a-1-5p 0 1 0
chr9:128333809|128334057 hsa-miR-6836-3p 1 0 0
chr9:128333809|128334057 hsa-miR-4708-5p 1 0 0
chr9:128333809|128334057 hsa-miR-6892-3p 1 0 0
chr9:128333809|128334057 hsa-miR-219a-1-3p 1 0 0
chr9:128333809|128334057 hsa-miR-3692-5p 0 1 0
chr9:128333809|128334057 hsa-miR-3192-5p 1 1 0
chr9:128333809|128334057 hsa-miR-4722-5p 0 1 0
chr9:128333809|128334057 hsa-miR-6875-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6873-3p 0 1 0
chr9:128333809|128334057 hsa-miR-6849-3p 0 1 0
chr9:128333809|128334057 hsa-miR-1915-5p 1 0 0
chr9:128333809|128334057 hsa-miR-6845-3p 1 0 0
chr9:128333809|128334057 hsa-miR-877-3p 1 0 0
chr9:128333809|128334057 hsa-miR-4753-3p 0 1 0
chr9:128333809|128334057 hsa-miR-6774-3p 1 0 0
chr9:128333809|128334057 hsa-miR-4713-5p 1 0 0
chr9:128333809|128334057 hsa-miR-4436b-5p 1 1 0
chr9:128333809|128334057 hsa-miR-1226-5p 0 1 0
chr9:128333809|128334057 hsa-miR-4763-5p 1 0 0
chr9:128333809|128334057 hsa-miR-3944-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6894-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6803-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6757-3p 1 0 0
chr9:128333809|128334057 hsa-miR-7113-3p 1 0 0
chr9:128333809|128334057 hsa-miR-7111-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6830-3p 1 0 0
chr9:128333809|128334057 hsa-miR-324-5p 1 0 0
chr9:128333809|128334057 hsa-miR-5196-3p 1 0 0
chr9:128333809|128334057 hsa-miR-149-3p 1 0 0
chr9:128333809|128334057 hsa-miR-1306-5p 1 0 0
chr9:128333809|128334057 hsa-miR-3189-3p 0 1 0
chr9:128333809|128334057 hsa-miR-4687-5p 0 1 0
chr9:128333809|128334057 hsa-miR-6887-3p 1 1 0
chr9:128333809|128334057 hsa-miR-597-3p 0 1 0
chr9:128333809|128334057 hsa-miR-6778-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6741-3p 1 0 0
chr9:128333809|128334057 hsa-miR-3140-3p 0 1 0
chr9:128333809|128334057 hsa-miR-6826-3p 1 1 0
chr9:128333809|128334057 hsa-miR-4749-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6880-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6883-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6734-3p 1 1 0
chr9:128333809|128334057 hsa-miR-6729-3p 1 0 0
chr9:128333809|128334057 hsa-miR-3680-3p 1 0 0
chr9:128333809|128334057 hsa-miR-642a-5p 1 1 0
chr9:128333809|128334057 hsa-miR-1228-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6779-5p 0 1 0
chr9:128333809|128334057 hsa-miR-6780a-5p 0 1 0
chr9:128333809|128334057 hsa-miR-3127-3p 1 0 0
chr9:128333809|128334057 hsa-miR-892c-3p 0 1 0
chr9:128333809|128334057 hsa-miR-4728-5p 1 0 0
chr9:128333809|128334057 hsa-miR-3689a-3p 0 1 0
chr9:128333809|128334057 hsa-miR-939-5p 1 0 0
chr9:128333809|128334057 hsa-miR-6791-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6724-5p 1 0 0
chr9:128333809|128334057 hsa-miR-6756-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6829-3p 1 0 0
chr9:128333809|128334057 hsa-miR-485-3p 1 1 0
chr9:128333809|128334057 hsa-miR-5581-5p 1 0 0
chr9:128333809|128334057 hsa-miR-6744-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6833-3p 0 1 0
chr9:128333809|128334057 hsa-miR-6504-5p 0 1 0
chr9:128333809|128334057 hsa-miR-6843-3p 1 0 0
chr9:128333809|128334057 hsa-miR-6814-3p 1 0 0
chr9:128333809|128334057 hsa-miR-342-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr9:128333809|128334057
ORF Type ORF1
Protein Length 60
Nucleotide Length 183
Protein Sequence MHEQYQSSGLMLGCRSAPVATPPSQPGLLGARLGVLTGVRATPNSKSLRREKWRGRRVCE
Nucleotide Sequence ATGCATGAACAGTATCAGTCGTCTGGGCTCATGCTGGGATGTCGCAGTGCTCCTGTTGCAACTCCTCCCAGCCAGCCAGGTTTGCTGGGGGCCAGGCTGGGTGTCCTCACAGGAGTGAGGGCTACACCCAATTCCAAAAGCCTGAGAAGAGAGAAGTGGAGGGGGAGGCGAGTGTGTGAATAA
CircID chr9:128333809|128334057
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MNSISRLGSCWDVAVLLLQLLPASQVCWGPGWVSSQE
Nucleotide Sequence ATGAACAGTATCAGTCGTCTGGGCTCATGCTGGGATGTCGCAGTGCTCCTGTTGCAACTCCTCCCAGCCAGCCAGGTTTGCTGGGGGCCAGGCTGGGTGTCCTCACAGGAGTGA
CircID chr9:128333809|128334057
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MSQCSCCNSSQPARFAGGQAGCPHRSEGYTQFQKPEKREVEGEASV
Nucleotide Sequence ATGTCGCAGTGCTCCTGTTGCAACTCCTCCCAGCCAGCCAGGTTTGCTGGGGGCCAGGCTGGGTGTCCTCACAGGAGTGAGGGCTACACCCAATTCCAAAAGCCTGAGAAGAGAGAAGTGGAGGGGGAGGCGAGTGTGTGA
CircID chr9:128333809|128334057
ORF Type ORF4
Protein Length 46
Nucleotide Length 138
Protein Sequence MAGRSCNRSTATSQHEPRRLILFMHGSPWVAAGPPGNATVLLAPCG
Nucleotide Sequence CTGGCTGGGAGGAGTTGCAACAGGAGCACTGCGACATCCCAGCATGAGCCCAGACGACTGATACTGTTCATGCATGGTTCTCCTTGGGTAGCTGCTGGTCCCCCTGGGAATGCCACTGTACTGCTTGCTCCCTGCGGG
CircID chr9:128333809|128334057
ORF Type ORF5
Protein Length 40
Nucleotide Length 123
Protein Sequence MELGVALTPVRTPSLAPSKPGWLGGVATGALRHPSMSPDD
Nucleotide Sequence TTGGAATTGGGTGTAGCCCTCACTCCTGTGAGGACACCCAGCCTGGCCCCCAGCAAACCTGGCTGGCTGGGAGGAGTTGCAACAGGAGCACTGCGACATCCCAGCATGAGCCCAGACGACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab