CircRNA Information

General Information
circRNA Basic Information
CircID chr9:128353200|128353519
Strand +
CircType exon
Host Gene ENSG00000167114.11;
Algorism CIRI2;
Sequence GCCGTCGGGCCCCCGGATCAGCTCCATGGTGTCCTCGTTGACACGTACCAACCGGATGGGGTACACGAAGGACAGGATGCGGCTATTGAAACCACAGGCCCCCACCTGCGAAGGCCAAGACTTGGGCCTGGGCTCTCTCACCATGGGCCCAAAACTGGACAATGAGGGGGAAGTGGGACTCCAGCACCCACACTCTCACGCTCGAACTCTGCCCTCCCCTCTGCATCCAGTGCCTTCTGTGGGCCATCCCTGCAGCAGCCTCGCCCATCCCCAACCTGGCCGCACCTGGCTGTCGAAGTTGCCCAGGCTACAGTTGCACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:128353200|128353519 hsa-miR-198 0 0 1
chr9:128353200|128353519 hsa-miR-130a-5p 0 0 1
chr9:128353200|128353519 hsa-miR-130a-3p 0 0 1
chr9:128353200|128353519 hsa-miR-301a-5p 0 0 1
chr9:128353200|128353519 hsa-miR-301a-3p 0 0 1
chr9:128353200|128353519 hsa-miR-130b-5p 0 0 1
chr9:128353200|128353519 hsa-miR-130b-3p 0 0 1
chr9:128353200|128353519 hsa-miR-505-5p 0 0 1
chr9:128353200|128353519 hsa-miR-505-3p 0 0 1
chr9:128353200|128353519 hsa-miR-506-5p 0 0 1
chr9:128353200|128353519 hsa-miR-506-3p 0 0 1
chr9:128353200|128353519 hsa-miR-596 0 0 1
chr9:128353200|128353519 hsa-miR-611 1 1 1
chr9:128353200|128353519 hsa-miR-612 0 1 1
chr9:128353200|128353519 hsa-miR-661 1 1 1
chr9:128353200|128353519 hsa-miR-1264 0 0 1
chr9:128353200|128353519 hsa-miR-454-5p 0 0 1
chr9:128353200|128353519 hsa-miR-454-3p 0 0 1
chr9:128353200|128353519 hsa-miR-675-5p 0 0 1
chr9:128353200|128353519 hsa-miR-675-3p 0 0 1
chr9:128353200|128353519 hsa-miR-891b 0 0 1
chr9:128353200|128353519 hsa-miR-301b-5p 0 0 1
chr9:128353200|128353519 hsa-miR-301b-3p 0 0 1
chr9:128353200|128353519 hsa-miR-1183 1 0 1
chr9:128353200|128353519 hsa-miR-1205 0 1 1
chr9:128353200|128353519 hsa-miR-1287-5p 0 0 1
chr9:128353200|128353519 hsa-miR-1287-3p 0 0 1
chr9:128353200|128353519 hsa-miR-1243 0 0 1
chr9:128353200|128353519 hsa-miR-1263 0 0 1
chr9:128353200|128353519 hsa-miR-1197 0 1 1
chr9:128353200|128353519 hsa-miR-145-5p 0 1 1
chr9:128353200|128353519 hsa-miR-296-5p 0 0 1
chr9:128353200|128353519 hsa-miR-485-5p 0 1 1
chr9:128353200|128353519 hsa-miR-574-5p 1 1 1
chr9:128353200|128353519 hsa-miR-1289 0 0 1
chr9:128353200|128353519 hsa-miR-671-3p 0 0 1
chr9:128353200|128353519 hsa-miR-124 0 0 1
chr9:128353200|128353519 hsa-miR-1285 0 0 1
chr9:128353200|128353519 hsa-miR-608 1 0 0
chr9:128353200|128353519 hsa-miR-663a 1 0 0
chr9:128353200|128353519 hsa-miR-762 1 0 0
chr9:128353200|128353519 hsa-miR-1268a 1 0 0
chr9:128353200|128353519 hsa-miR-2861 0 1 0
chr9:128353200|128353519 hsa-miR-3131 0 1 0
chr9:128353200|128353519 hsa-miR-3132 1 1 0
chr9:128353200|128353519 hsa-miR-3137 1 1 0
chr9:128353200|128353519 hsa-miR-3147 1 0 0
chr9:128353200|128353519 hsa-miR-3178 1 0 0
chr9:128353200|128353519 hsa-miR-3196 1 0 0
chr9:128353200|128353519 hsa-miR-4270 1 0 0
chr9:128353200|128353519 hsa-miR-3621 1 0 0
chr9:128353200|128353519 hsa-miR-3665 1 1 0
chr9:128353200|128353519 hsa-miR-3666 0 1 0
chr9:128353200|128353519 hsa-miR-1268b 1 1 0
chr9:128353200|128353519 hsa-miR-4447 0 1 0
chr9:128353200|128353519 hsa-miR-4466 1 0 0
chr9:128353200|128353519 hsa-miR-4479 1 0 0
chr9:128353200|128353519 hsa-miR-4486 1 1 0
chr9:128353200|128353519 hsa-miR-4488 1 0 0
chr9:128353200|128353519 hsa-miR-2392 1 0 0
chr9:128353200|128353519 hsa-miR-4525 1 0 0
chr9:128353200|128353519 hsa-miR-4526 1 0 0
chr9:128353200|128353519 hsa-miR-1587 1 0 0
chr9:128353200|128353519 hsa-miR-4651 1 1 0
chr9:128353200|128353519 hsa-miR-4658 0 1 0
chr9:128353200|128353519 hsa-miR-4689 1 0 0
chr9:128353200|128353519 hsa-miR-4706 1 0 0
chr9:128353200|128353519 hsa-miR-4739 1 0 0
chr9:128353200|128353519 hsa-miR-5090 1 0 0
chr9:128353200|128353519 hsa-miR-5572 1 0 0
chr9:128353200|128353519 hsa-miR-5684 0 1 0
chr9:128353200|128353519 hsa-miR-5698 0 1 0
chr9:128353200|128353519 hsa-miR-5787 1 0 0
chr9:128353200|128353519 hsa-miR-6069 1 0 0
chr9:128353200|128353519 hsa-miR-6086 1 0 0
chr9:128353200|128353519 hsa-miR-6127 1 0 0
chr9:128353200|128353519 hsa-miR-8072 1 0 0
chr9:128353200|128353519 hsa-miR-12115 1 0 0
chr9:128353200|128353519 hsa-miR-12128 1 1 0
chr9:128353200|128353519 hsa-miR-4433b-3p 1 0 0
chr9:128353200|128353519 hsa-miR-92a-2-5p 0 1 0
chr9:128353200|128353519 hsa-miR-4433a-3p 1 0 0
chr9:128353200|128353519 hsa-miR-3150a-3p 1 0 0
chr9:128353200|128353519 hsa-miR-6861-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6825-5p 1 1 0
chr9:128353200|128353519 hsa-miR-6857-5p 1 1 0
chr9:128353200|128353519 hsa-miR-4687-3p 1 0 0
chr9:128353200|128353519 hsa-miR-6728-5p 1 0 0
chr9:128353200|128353519 hsa-miR-3934-5p 1 0 0
chr9:128353200|128353519 hsa-miR-1227-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6089 1 0 0
chr9:128353200|128353519 hsa-miR-6757-5p 1 0 0
chr9:128353200|128353519 hsa-miR-3677-5p 1 0 0
chr9:128353200|128353519 hsa-miR-1301-3p 1 0 0
chr9:128353200|128353519 hsa-miR-6820-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6741-5p 0 1 0
chr9:128353200|128353519 hsa-miR-6727-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6759-5p 1 1 0
chr9:128353200|128353519 hsa-miR-3187-3p 1 0 0
chr9:128353200|128353519 hsa-miR-197-5p 1 0 0
chr9:128353200|128353519 hsa-miR-3189-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6776-5p 1 1 0
chr9:128353200|128353519 hsa-miR-7108-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6748-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6732-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6798-5p 1 1 0
chr9:128353200|128353519 hsa-miR-6770-5p 0 1 0
chr9:128353200|128353519 hsa-miR-6782-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6874-5p 0 1 0
chr9:128353200|128353519 hsa-miR-6810-5p 1 0 0
chr9:128353200|128353519 hsa-miR-7855-5p 0 1 0
chr9:128353200|128353519 hsa-miR-6735-3p 0 1 0
chr9:128353200|128353519 hsa-miR-5088-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6740-5p 1 1 0
chr9:128353200|128353519 hsa-miR-4640-5p 1 0 0
chr9:128353200|128353519 hsa-miR-5010-3p 0 1 0
chr9:128353200|128353519 hsa-miR-1228-5p 1 0 0
chr9:128353200|128353519 hsa-miR-92b-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6749-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6501-5p 1 0 0
chr9:128353200|128353519 hsa-miR-4743-5p 1 0 0
chr9:128353200|128353519 hsa-miR-4787-5p 1 0 0
chr9:128353200|128353519 hsa-miR-2681-3p 0 1 0
chr9:128353200|128353519 hsa-miR-149-3p 1 0 0
chr9:128353200|128353519 hsa-miR-3616-3p 0 1 0
chr9:128353200|128353519 hsa-miR-6789-5p 1 0 0
chr9:128353200|128353519 hsa-miR-7156-3p 1 0 0
chr9:128353200|128353519 hsa-miR-5010-5p 1 0 0
chr9:128353200|128353519 hsa-miR-4750-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6782-3p 1 1 0
chr9:128353200|128353519 hsa-miR-605-3p 0 1 0
chr9:128353200|128353519 hsa-miR-20b-3p 1 1 0
chr9:128353200|128353519 hsa-miR-6748-3p 0 1 0
chr9:128353200|128353519 hsa-miR-4433a-5p 0 1 0
chr9:128353200|128353519 hsa-miR-3156-3p 0 1 0
chr9:128353200|128353519 hsa-miR-1207-5p 1 0 0
chr9:128353200|128353519 hsa-miR-4763-3p 1 0 0
chr9:128353200|128353519 hsa-miR-6816-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6893-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6737-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6752-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6756-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6803-5p 1 1 0
chr9:128353200|128353519 hsa-miR-6819-5p 1 0 0
chr9:128353200|128353519 hsa-miR-7107-5p 1 0 0
chr9:128353200|128353519 hsa-miR-7110-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6751-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6763-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6779-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6780a-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6879-5p 1 1 0
chr9:128353200|128353519 hsa-miR-7111-5p 1 0 0
chr9:128353200|128353519 hsa-miR-3620-5p 1 0 0
chr9:128353200|128353519 hsa-miR-4728-5p 1 1 0
chr9:128353200|128353519 hsa-miR-5196-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6780b-5p 1 0 0
chr9:128353200|128353519 hsa-miR-10392-5p 1 0 0
chr9:128353200|128353519 hsa-miR-1237-5p 1 0 0
chr9:128353200|128353519 hsa-miR-328-5p 1 0 0
chr9:128353200|128353519 hsa-miR-4632-5p 1 1 0
chr9:128353200|128353519 hsa-miR-4649-5p 1 0 0
chr9:128353200|128353519 hsa-miR-4685-5p 1 0 0
chr9:128353200|128353519 hsa-miR-4726-5p 1 0 0
chr9:128353200|128353519 hsa-miR-4749-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6729-5p 1 1 0
chr9:128353200|128353519 hsa-miR-6735-5p 0 1 0
chr9:128353200|128353519 hsa-miR-6848-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6858-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6883-5p 0 1 0
chr9:128353200|128353519 hsa-miR-3187-5p 1 1 0
chr9:128353200|128353519 hsa-miR-939-5p 1 0 0
chr9:128353200|128353519 hsa-miR-1285-3p 0 1 0
chr9:128353200|128353519 hsa-miR-6773-5p 0 1 0
chr9:128353200|128353519 hsa-miR-7843-5p 1 1 0
chr9:128353200|128353519 hsa-miR-6736-5p 1 0 0
chr9:128353200|128353519 hsa-miR-4472 0 1 0
chr9:128353200|128353519 hsa-miR-541-3p 1 0 0
chr9:128353200|128353519 hsa-miR-6785-5p 1 1 0
chr9:128353200|128353519 hsa-miR-6724-5p 0 1 0
chr9:128353200|128353519 hsa-miR-6791-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6762-5p 1 0 0
chr9:128353200|128353519 hsa-miR-6884-5p 0 1 0
chr9:128353200|128353519 hsa-miR-5588-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr9:128353200|128353519
ORF Type ORF1
Protein Length 98
Nucleotide Length 294
Protein Sequence MVSSLTRTNRMGYTKDRMRLLKPQAPTCEGQDLGLGSLTMGPKLDNEGEVGLQHPHSHARTLPSPLHPVPSVGHPCSSLAHPQPGRTWLSKLPRLQLH
Nucleotide Sequence ATGGTGTCCTCGTTGACACGTACCAACCGGATGGGGTACACGAAGGACAGGATGCGGCTATTGAAACCACAGGCCCCCACCTGCGAAGGCCAAGACTTGGGCCTGGGCTCTCTCACCATGGGCCCAAAACTGGACAATGAGGGGGAAGTGGGACTCCAGCACCCACACTCTCACGCTCGAACTCTGCCCTCCCCTCTGCATCCAGTGCCTTCTGTGGGCCATCCCTGCAGCAGCCTCGCCCATCCCCAACCTGGCCGCACCTGGCTGTCGAAGTTGCCCAGGCTACAGTTGCAC
CircID chr9:128353200|128353519
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MRGKWDSSTHTLTLELCPPLCIQCLLWAIPAAASPIPNLAAPGCRSCPGYSCT
Nucleotide Sequence ATGAGGGGGAAGTGGGACTCCAGCACCCACACTCTCACGCTCGAACTCTGCCCTCCCCTCTGCATCCAGTGCCTTCTGTGGGCCATCCCTGCAGCAGCCTCGCCCATCCCCAACCTGGCCGCACCTGGCTGTCGAAGTTGCCCAGGCTACAGTTGCACT
CircID chr9:128353200|128353519
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MDAEGRAEFERESVGAGVPLPPHCPVLGPW
Nucleotide Sequence CTGGATGCAGAGGGGAGGGCAGAGTTCGAGCGTGAGAGTGTGGGTGCTGGAGTCCCACTTCCCCCTCATTGTCCAGTTTTGGGCCCATGGTGA
CircID chr9:128353200|128353519
ORF Type ORF4
Protein Length 63
Nucleotide Length 192
Protein Sequence MGMGEAAAGMAHRRHWMQRGGQSSSVRVWVLESHFPLIVQFWAHGERAQAQVLAFAGGGLWFQ
Nucleotide Sequence TTGGGGATGGGCGAGGCTGCTGCAGGGATGGCCCACAGAAGGCACTGGATGCAGAGGGGAGGGCAGAGTTCGAGCGTGAGAGTGTGGGTGCTGGAGTCCCACTTCCCCCTCATTGTCCAGTTTTGGGCCCATGGTGAGAGAGCCCAGGCCCAAGTCTTGGCCTTCGCAGGTGGGGGCCTGTGGTTTCAATAG
CircID chr9:128353200|128353519
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MGNFDSQVRPGWGWARLLQGWPTEGTGCRGEGRVRA
Nucleotide Sequence CTGGGCAACTTCGACAGCCAGGTGCGGCCAGGTTGGGGATGGGCGAGGCTGCTGCAGGGATGGCCCACAGAAGGCACTGGATGCAGAGGGGAGGGCAGAGTTCGAGCGTGA
CircID chr9:128353200|128353519
ORF Type ORF6
Protein Length 54
Nucleotide Length 162
Protein Sequence MSSFGPMVREPRPKSWPSQVGACGFNSRILSFVYPIRLVRVNEDTMELIRGPDG
Nucleotide Sequence TTGTCCAGTTTTGGGCCCATGGTGAGAGAGCCCAGGCCCAAGTCTTGGCCTTCGCAGGTGGGGGCCTGTGGTTTCAATAGCCGCATCCTGTCCTTCGTGTACCCCATCCGGTTGGTACGTGTCAACGAGGACACCATGGAGCTGATCCGGGGGCCCGACGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab