CircRNA Information

General Information
circRNA Basic Information
CircID chr9:128542007|128542197
Strand +
CircType exon
Host Gene ENSG00000119392.13;
Algorism CIRI2;
Sequence CAGTGAACACTCCCCCACAAACACACCCTGCCACAAGACATTTAGCACAGAGGAACAGATCCATGGCCACTGCCTCTGCAGTATCAAAGAGAATTAGTCTTTCCACAAAACAAATTTTAACAGCCAATCTCTGGATTTCTGTAGTGGCTTTAGTCAGGCATATTTATCATCATATTAGCAGTGTTCAGTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:128542007|128542197 hsa-miR-34a-5p 0 0 1
chr9:128542007|128542197 hsa-miR-34a-3p 0 0 1
chr9:128542007|128542197 hsa-miR-217-5p 0 0 1
chr9:128542007|128542197 hsa-miR-217-3p 0 0 1
chr9:128542007|128542197 hsa-miR-122-5p 0 0 1
chr9:128542007|128542197 hsa-miR-122-3p 0 0 1
chr9:128542007|128542197 hsa-miR-141-5p 0 0 1
chr9:128542007|128542197 hsa-miR-141-3p 0 0 1
chr9:128542007|128542197 hsa-miR-200a-5p 0 0 1
chr9:128542007|128542197 hsa-miR-200a-3p 0 0 1
chr9:128542007|128542197 hsa-miR-449a 0 0 1
chr9:128542007|128542197 hsa-miR-431-5p 0 0 1
chr9:128542007|128542197 hsa-miR-431-3p 0 0 1
chr9:128542007|128542197 hsa-miR-581 0 0 1
chr9:128542007|128542197 hsa-miR-625-5p 0 0 1
chr9:128542007|128542197 hsa-miR-625-3p 0 0 1
chr9:128542007|128542197 hsa-miR-647 0 0 1
chr9:128542007|128542197 hsa-miR-449b-5p 0 0 1
chr9:128542007|128542197 hsa-miR-449b-3p 0 0 1
chr9:128542007|128542197 hsa-miR-1272 0 0 1
chr9:128542007|128542197 hsa-miR-1275 0 0 1
chr9:128542007|128542197 hsa-miR-1322 0 0 1
chr9:128542007|128542197 hsa-miR-1827 0 0 1
chr9:128542007|128542197 hsa-miR-491-5p 0 0 1
chr9:128542007|128542197 hsa-miR-525-5p 0 0 1
chr9:128542007|128542197 hsa-miR-532-5p 0 0 1
chr9:128542007|128542197 hsa-miR-490-5p 0 1 1
chr9:128542007|128542197 hsa-miR-1207-5p 1 0 1
chr9:128542007|128542197 hsa-miR-520a-5p 0 0 1
chr9:128542007|128542197 hsa-miR-34c-5p 0 0 1
chr9:128542007|128542197 hsa-miR-509-3-5p 0 1 1
chr9:128542007|128542197 hsa-miR-509-5p 0 1 1
chr9:128542007|128542197 hsa-miR-1201 0 0 1
chr9:128542007|128542197 hsa-miR-610 1 0 0
chr9:128542007|128542197 hsa-miR-663a 1 0 0
chr9:128542007|128542197 hsa-miR-760 1 0 0
chr9:128542007|128542197 hsa-miR-1182 1 0 0
chr9:128542007|128542197 hsa-miR-3138 1 0 0
chr9:128542007|128542197 hsa-miR-4326 0 1 0
chr9:128542007|128542197 hsa-miR-4270 1 0 0
chr9:128542007|128542197 hsa-miR-1268b 1 0 0
chr9:128542007|128542197 hsa-miR-4455 1 1 0
chr9:128542007|128542197 hsa-miR-4651 1 0 0
chr9:128542007|128542197 hsa-miR-4706 1 0 0
chr9:128542007|128542197 hsa-miR-5693 0 1 0
chr9:128542007|128542197 hsa-miR-5698 0 1 0
chr9:128542007|128542197 hsa-miR-6132 1 0 0
chr9:128542007|128542197 hsa-miR-7150 1 0 0
chr9:128542007|128542197 hsa-miR-8085 1 0 0
chr9:128542007|128542197 hsa-miR-187-3p 1 0 0
chr9:128542007|128542197 hsa-miR-7-5p 0 1 0
chr9:128542007|128542197 hsa-miR-6747-5p 1 0 0
chr9:128542007|128542197 hsa-miR-6765-5p 1 0 0
chr9:128542007|128542197 hsa-miR-4687-3p 1 0 0
chr9:128542007|128542197 hsa-miR-6833-5p 1 0 0
chr9:128542007|128542197 hsa-miR-3677-5p 0 1 0
chr9:128542007|128542197 hsa-miR-3187-3p 0 1 0
chr9:128542007|128542197 hsa-miR-6721-5p 1 0 0
chr9:128542007|128542197 hsa-miR-7108-5p 1 0 0
chr9:128542007|128542197 hsa-miR-2467-3p 0 1 0
chr9:128542007|128542197 hsa-miR-4633-5p 0 1 0
chr9:128542007|128542197 hsa-miR-1908-5p 1 0 0
chr9:128542007|128542197 hsa-miR-6823-5p 1 0 0
chr9:128542007|128542197 hsa-miR-4756-3p 0 1 0
chr9:128542007|128542197 hsa-miR-4638-3p 1 0 0
chr9:128542007|128542197 hsa-miR-3162-5p 1 0 0
chr9:128542007|128542197 hsa-miR-3158-5p 0 1 0
chr9:128542007|128542197 hsa-miR-574-5p 1 0 0
chr9:128542007|128542197 hsa-miR-891a-3p 1 0 0
chr9:128542007|128542197 hsa-miR-6890-3p 1 0 0
chr9:128542007|128542197 hsa-miR-200b-3p 1 0 0
chr9:128542007|128542197 hsa-miR-4763-3p 1 1 0
chr9:128542007|128542197 hsa-miR-6787-5p 1 0 0
chr9:128542007|128542197 hsa-miR-6752-5p 1 0 0
chr9:128542007|128542197 hsa-miR-7110-5p 1 0 0
chr9:128542007|128542197 hsa-miR-10401-5p 1 0 0
chr9:128542007|128542197 hsa-miR-6722-3p 1 0 0
chr9:128542007|128542197 hsa-miR-6779-5p 1 0 0
chr9:128542007|128542197 hsa-miR-6808-5p 1 0 0
chr9:128542007|128542197 hsa-miR-10396b-5p 1 0 0
chr9:128542007|128542197 hsa-miR-1909-3p 1 0 0
chr9:128542007|128542197 hsa-miR-6777-5p 1 0 0
chr9:128542007|128542197 hsa-miR-6883-5p 1 0 0
chr9:128542007|128542197 hsa-miR-34b-5p 0 1 0
chr9:128542007|128542197 hsa-miR-4472 0 1 0
chr9:128542007|128542197 hsa-miR-3059-5p 1 0 0
chr9:128542007|128542197 hsa-miR-2682-5p 0 1 0
chr9:128542007|128542197 hsa-miR-200c-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:128542007|128542197
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MATASAVSKRISLSTKQILTANLWISVVALVRHIYHHISSVQF
Nucleotide Sequence ATGGCCACTGCCTCTGCAGTATCAAAGAGAATTAGTCTTTCCACAAAACAAATTTTAACAGCCAATCTCTGGATTTCTGTAGTGGCTTTAGTCAGGCATATTTATCATCATATTAGCAGTGTTCAGTTC
CircID chr9:128542007|128542197
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MTKATTEIQRLAVKICFVERLILFDTAEAVAMDLFLCAKCLVAGCVCGGVFT
Nucleotide Sequence CTGACTAAAGCCACTACAGAAATCCAGAGATTGGCTGTTAAAATTTGTTTTGTGGAAAGACTAATTCTCTTTGATACTGCAGAGGCAGTGGCCATGGATCTGTTCCTCTGTGCTAAATGTCTTGTGGCAGGGTGTGTTTGTGGGGGAGTGTTCACT
CircID chr9:128542007|128542197
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MILQRQWPWICSSVLNVLWQGVFVGECSL
Nucleotide Sequence TTGATACTGCAGAGGCAGTGGCCATGGATCTGTTCCTCTGTGCTAAATGTCTTGTGGCAGGGTGTGTTTGTGGGGGAGTGTTCACTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab