CircRNA Information

General Information
circRNA Basic Information
CircID chr9:128632918|128633291
Strand +
CircType exon
Host Gene ENSG00000197694.12;
Algorism CIRI2;
Sequence GCGGTGGGGAGCTCGCGGCCCTTGCCGTCCACGTAGGGCTTCATGTGGGAGACGCAGTAGTCGGCTTGTTCCCGGGTCAGGTTCTGTGGGGTAAGAGATGGCACCTGGTGCCTGAGCCAGCTGCACCCACTTCAAACCCGACCTCCCAGGTCTCAGGATGCTGGGGGCTCGGAGCTGCTTCTACAAGCAGATCCGGGACTTCTGTCCATACTGAGTTTGATTTGTAAATGGGGAGAATACCCAGCGCAGGGCCTGTTACCCCAGACTCAGCTCTGCCACAAATTTGGCTTTAGTTTTCCAAAGGACACCTCTTCACCCACCTCCTGAGGCCCATACCTGGTAGAGCTCCTCCTTGGTCACGTAAGGCTTTCCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:128632918|128633291 hsa-miR-149-5p 0 0 1
chr9:128632918|128633291 hsa-miR-149-3p 0 0 1
chr9:128632918|128633291 hsa-miR-150-5p 0 0 1
chr9:128632918|128633291 hsa-miR-150-3p 0 0 1
chr9:128632918|128633291 hsa-miR-184 0 0 1
chr9:128632918|128633291 hsa-miR-573 0 1 1
chr9:128632918|128633291 hsa-miR-627-5p 0 0 1
chr9:128632918|128633291 hsa-miR-627-3p 0 0 1
chr9:128632918|128633291 hsa-miR-630 0 0 1
chr9:128632918|128633291 hsa-miR-631 0 0 1
chr9:128632918|128633291 hsa-miR-637 1 0 1
chr9:128632918|128633291 hsa-miR-646 0 0 1
chr9:128632918|128633291 hsa-miR-1301-5p 0 0 1
chr9:128632918|128633291 hsa-miR-1301-3p 0 0 1
chr9:128632918|128633291 hsa-miR-765 0 0 1
chr9:128632918|128633291 hsa-miR-708-5p 0 0 1
chr9:128632918|128633291 hsa-miR-708-3p 0 0 1
chr9:128632918|128633291 hsa-miR-924 0 0 1
chr9:128632918|128633291 hsa-miR-1200 0 0 1
chr9:128632918|128633291 hsa-miR-1291 0 0 1
chr9:128632918|128633291 hsa-miR-1262 0 0 1
chr9:128632918|128633291 hsa-miR-1225-3p 0 0 1
chr9:128632918|128633291 hsa-miR-769-5p 0 1 1
chr9:128632918|128633291 hsa-miR-615-3p 0 0 1
chr9:128632918|128633291 hsa-miR-532-3p 0 1 1
chr9:128632918|128633291 hsa-miR-361-3p 0 0 1
chr9:128632918|128633291 hsa-miR-28-5p 0 1 1
chr9:128632918|128633291 hsa-miR-1207-3p 0 0 1
chr9:128632918|128633291 hsa-miR-188-3p 0 1 1
chr9:128632918|128633291 hsa-miR-524-5p 0 0 1
chr9:128632918|128633291 hsa-miR-338-3p 0 1 1
chr9:128632918|128633291 hsa-miR-520d-5p 0 0 1
chr9:128632918|128633291 hsa-miR-1280 0 0 1
chr9:128632918|128633291 hsa-miR-24 0 0 1
chr9:128632918|128633291 hsa-miR-194 0 0 1
chr9:128632918|128633291 hsa-miR-608 1 0 0
chr9:128632918|128633291 hsa-miR-764 0 1 0
chr9:128632918|128633291 hsa-miR-1538 1 0 0
chr9:128632918|128633291 hsa-miR-2861 1 0 0
chr9:128632918|128633291 hsa-miR-3132 1 0 0
chr9:128632918|128633291 hsa-miR-3139 0 1 0
chr9:128632918|128633291 hsa-miR-3155a 0 1 0
chr9:128632918|128633291 hsa-miR-4322 1 1 0
chr9:128632918|128633291 hsa-miR-4324 0 1 0
chr9:128632918|128633291 hsa-miR-4259 1 0 0
chr9:128632918|128633291 hsa-miR-3661 1 1 0
chr9:128632918|128633291 hsa-miR-3936 1 0 0
chr9:128632918|128633291 hsa-miR-3943 0 1 0
chr9:128632918|128633291 hsa-miR-4449 1 1 0
chr9:128632918|128633291 hsa-miR-3689c 0 1 0
chr9:128632918|128633291 hsa-miR-4498 1 0 0
chr9:128632918|128633291 hsa-miR-4651 1 1 0
chr9:128632918|128633291 hsa-miR-4710 1 0 0
chr9:128632918|128633291 hsa-miR-5787 1 0 0
chr9:128632918|128633291 hsa-miR-6069 1 0 0
chr9:128632918|128633291 hsa-miR-6745 1 0 0
chr9:128632918|128633291 hsa-miR-8060 0 1 0
chr9:128632918|128633291 hsa-miR-8077 0 1 0
chr9:128632918|128633291 hsa-miR-12114 1 0 0
chr9:128632918|128633291 hsa-miR-12118 0 1 0
chr9:128632918|128633291 hsa-miR-7155-5p 0 1 0
chr9:128632918|128633291 hsa-miR-1247-3p 1 1 0
chr9:128632918|128633291 hsa-miR-6747-5p 1 0 0
chr9:128632918|128633291 hsa-miR-4433a-3p 1 0 0
chr9:128632918|128633291 hsa-miR-6765-5p 1 0 0
chr9:128632918|128633291 hsa-miR-671-5p 1 0 0
chr9:128632918|128633291 hsa-miR-7106-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6825-5p 1 0 0
chr9:128632918|128633291 hsa-miR-125a-3p 1 0 0
chr9:128632918|128633291 hsa-miR-219a-1-3p 0 1 0
chr9:128632918|128633291 hsa-miR-6799-5p 1 1 0
chr9:128632918|128633291 hsa-miR-7851-3p 0 1 0
chr9:128632918|128633291 hsa-miR-6089 1 0 0
chr9:128632918|128633291 hsa-miR-3192-5p 1 1 0
chr9:128632918|128633291 hsa-miR-4695-5p 1 0 0
chr9:128632918|128633291 hsa-miR-4709-3p 0 1 0
chr9:128632918|128633291 hsa-miR-593-5p 0 1 0
chr9:128632918|128633291 hsa-miR-24-3p 0 1 0
chr9:128632918|128633291 hsa-miR-6741-5p 1 1 0
chr9:128632918|128633291 hsa-miR-6759-5p 1 0 0
chr9:128632918|128633291 hsa-miR-197-5p 1 0 0
chr9:128632918|128633291 hsa-miR-191-3p 0 1 0
chr9:128632918|128633291 hsa-miR-5589-5p 0 1 0
chr9:128632918|128633291 hsa-miR-1292-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6748-5p 1 1 0
chr9:128632918|128633291 hsa-miR-6772-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6793-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6796-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6798-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6782-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6514-5p 1 0 0
chr9:128632918|128633291 hsa-miR-30b-3p 0 1 0
chr9:128632918|128633291 hsa-miR-5006-5p 1 0 0
chr9:128632918|128633291 hsa-miR-4713-5p 1 1 0
chr9:128632918|128633291 hsa-miR-3934-3p 0 1 0
chr9:128632918|128633291 hsa-miR-5580-5p 0 1 0
chr9:128632918|128633291 hsa-miR-6771-5p 1 0 0
chr9:128632918|128633291 hsa-miR-3160-3p 0 1 0
chr9:128632918|128633291 hsa-miR-4733-3p 0 1 0
chr9:128632918|128633291 hsa-miR-1289 0 1 0
chr9:128632918|128633291 hsa-miR-3944-5p 0 1 0
chr9:128632918|128633291 hsa-miR-629-3p 1 0 0
chr9:128632918|128633291 hsa-miR-4804-5p 0 1 0
chr9:128632918|128633291 hsa-miR-331-5p 0 1 0
chr9:128632918|128633291 hsa-miR-6895-3p 1 0 0
chr9:128632918|128633291 hsa-miR-503-3p 0 1 0
chr9:128632918|128633291 hsa-miR-6748-3p 1 0 0
chr9:128632918|128633291 hsa-miR-3173-5p 0 1 0
chr9:128632918|128633291 hsa-miR-4520-3p 0 1 0
chr9:128632918|128633291 hsa-miR-1273h-5p 1 1 0
chr9:128632918|128633291 hsa-miR-3689b-3p 0 1 0
chr9:128632918|128633291 hsa-miR-4763-3p 0 1 0
chr9:128632918|128633291 hsa-miR-6769b-5p 1 1 0
chr9:128632918|128633291 hsa-miR-6865-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6737-5p 0 1 0
chr9:128632918|128633291 hsa-miR-6752-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6754-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6756-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6769a-5p 1 1 0
chr9:128632918|128633291 hsa-miR-6803-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6815-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6842-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6851-5p 1 1 0
chr9:128632918|128633291 hsa-miR-7110-5p 1 0 0
chr9:128632918|128633291 hsa-miR-10401-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6751-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6779-5p 1 1 0
chr9:128632918|128633291 hsa-miR-6788-5p 1 0 0
chr9:128632918|128633291 hsa-miR-7111-5p 1 0 0
chr9:128632918|128633291 hsa-miR-1909-3p 1 1 0
chr9:128632918|128633291 hsa-miR-4649-5p 1 0 0
chr9:128632918|128633291 hsa-miR-4701-3p 1 1 0
chr9:128632918|128633291 hsa-miR-6729-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6858-5p 1 0 0
chr9:128632918|128633291 hsa-miR-939-5p 1 0 0
chr9:128632918|128633291 hsa-miR-3085-5p 0 1 0
chr9:128632918|128633291 hsa-miR-10396a-3p 1 0 0
chr9:128632918|128633291 hsa-miR-6799-3p 1 1 0
chr9:128632918|128633291 hsa-miR-6773-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6736-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6855-5p 1 0 0
chr9:128632918|128633291 hsa-miR-3173-3p 0 1 0
chr9:128632918|128633291 hsa-miR-6891-5p 0 1 0
chr9:128632918|128633291 hsa-miR-6750-5p 1 0 0
chr9:128632918|128633291 hsa-miR-6724-5p 1 0 0
chr9:128632918|128633291 hsa-miR-7153-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:128632918|128633291
ORF Type ORF1
Protein Length 71
Nucleotide Length 216
Protein Sequence MSQLHPLQTRPPRSQDAGGSELLLQADPGLLSILSLICKWGEYPAQGLLPQTQLCHKFGFSFPKDTSSPTS
Nucleotide Sequence CTGAGCCAGCTGCACCCACTTCAAACCCGACCTCCCAGGTCTCAGGATGCTGGGGGCTCGGAGCTGCTTCTACAAGCAGATCCGGGACTTCTGTCCATACTGAGTTTGATTTGTAAATGGGGAGAATACCCAGCGCAGGGCCTGTTACCCCAGACTCAGCTCTGCCACAAATTTGGCTTTAGTTTTCCAAAGGACACCTCTTCACCCACCTCCTGA
CircID chr9:128632918|128633291
ORF Type ORF2
Protein Length 53
Nucleotide Length 162
Protein Sequence MFPGQVLWGKRWHLVPEPAAPTSNPTSQVSGCWGLGAASTSRSGTSVHTEFDL
Nucleotide Sequence TTGTTCCCGGGTCAGGTTCTGTGGGGTAAGAGATGGCACCTGGTGCCTGAGCCAGCTGCACCCACTTCAAACCCGACCTCCCAGGTCTCAGGATGCTGGGGGCTCGGAGCTGCTTCTACAAGCAGATCCGGGACTTCTGTCCATACTGAGTTTGATTTGTAA
CircID chr9:128632918|128633291
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MTREQADYCVSHMKPYVDGKGRELPT
Nucleotide Sequence CTGACCCGGGAACAAGCCGACTACTGCGTCTCCCACATGAAGCCCTACGTGGACGGCAAGGGCCGCGAGCTCCCCACC
CircID chr9:128632918|128633291
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence MGILPIYKSNSVWTEVPDLLVEAAPSPQHPETWEVGFEVGAAGSGTRCHLLPHRT
Nucleotide Sequence CTGGGTATTCTCCCCATTTACAAATCAAACTCAGTATGGACAGAAGTCCCGGATCTGCTTGTAGAAGCAGCTCCGAGCCCCCAGCATCCTGAGACCTGGGAGGTCGGGTTTGAAGTGGGTGCAGCTGGCTCAGGCACCAGGTGCCATCTCTTACCCCACAGAACCTGA
CircID chr9:128632918|128633291
ORF Type ORF5
Protein Length 52
Nucleotide Length 156
Protein Sequence MRPGRSGLKWVQLAQAPGAISYPTEPDPGTSRLLRLPHEALRGRQGPRAPHR
Nucleotide Sequence CTGAGACCTGGGAGGTCGGGTTTGAAGTGGGTGCAGCTGGCTCAGGCACCAGGTGCCATCTCTTACCCCACAGAACCTGACCCGGGAACAAGCCGACTACTGCGTCTCCCACATGAAGCCCTACGTGGACGGCAAGGGCCGCGAGCTCCCCACCGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab