CircRNA Information

General Information
circRNA Basic Information
CircID chr9:128809666|128809902
Strand +
CircType exon
Host Gene ENSG00000107021.14;
Algorism CIRI2;
Sequence CAGCTGACAAGTCCTGGAGAGAGGGTGGCCCAGGTGAGCAGGAAGCATCATGCCTCTGCCTCATCCTGGAGGTCCTGGAGTCAGCCCAGTTCTCTTCCCATCTTTACACTCAATTCCAGTACAGAACTCAGAGCCCGCTCAGCCAGGACCTGCTCGAAAACCAGGCAGTTCCTAGAAGCATGGGGAGAAGAGGCTGACTTTGATCTTGGAAAATGAAGAGGATCTTGTCTCCAACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:128809666|128809902 hsa-miR-146a-5p 0 0 1
chr9:128809666|128809902 hsa-miR-146a-3p 0 0 1
chr9:128809666|128809902 hsa-miR-370-5p 0 0 1
chr9:128809666|128809902 hsa-miR-370-3p 0 0 1
chr9:128809666|128809902 hsa-miR-345-5p 0 0 1
chr9:128809666|128809902 hsa-miR-345-3p 0 0 1
chr9:128809666|128809902 hsa-miR-520g-5p 0 0 1
chr9:128809666|128809902 hsa-miR-520g-3p 0 0 1
chr9:128809666|128809902 hsa-miR-520h 0 0 1
chr9:128809666|128809902 hsa-miR-571 0 0 1
chr9:128809666|128809902 hsa-miR-579-5p 0 0 1
chr9:128809666|128809902 hsa-miR-579-3p 0 0 1
chr9:128809666|128809902 hsa-miR-620 0 0 1
chr9:128809666|128809902 hsa-miR-661 0 0 1
chr9:128809666|128809902 hsa-miR-766-5p 0 0 1
chr9:128809666|128809902 hsa-miR-766-3p 0 0 1
chr9:128809666|128809902 hsa-miR-665 0 0 1
chr9:128809666|128809902 hsa-miR-760 1 0 1
chr9:128809666|128809902 hsa-miR-942-5p 0 0 1
chr9:128809666|128809902 hsa-miR-942-3p 0 0 1
chr9:128809666|128809902 hsa-miR-1178-5p 0 0 1
chr9:128809666|128809902 hsa-miR-1178-3p 0 0 1
chr9:128809666|128809902 hsa-miR-1243 0 0 1
chr9:128809666|128809902 hsa-miR-1255a 0 0 1
chr9:128809666|128809902 hsa-miR-1270 0 0 1
chr9:128809666|128809902 hsa-miR-1322 0 0 1
chr9:128809666|128809902 hsa-miR-1827 0 0 1
chr9:128809666|128809902 hsa-miR-574-5p 0 0 1
chr9:128809666|128809902 hsa-miR-508-5p 0 0 1
chr9:128809666|128809902 hsa-miR-1207-3p 0 0 1
chr9:128809666|128809902 hsa-miR-767-3p 0 0 1
chr9:128809666|128809902 hsa-miR-146b-5p 0 0 1
chr9:128809666|128809902 hsa-miR-516a-3p 0 0 1
chr9:128809666|128809902 hsa-miR-1255b 0 0 1
chr9:128809666|128809902 hsa-miR-1254 0 0 1
chr9:128809666|128809902 hsa-miR-762 1 0 0
chr9:128809666|128809902 hsa-miR-1299 1 0 0
chr9:128809666|128809902 hsa-miR-2861 1 0 0
chr9:128809666|128809902 hsa-miR-3131 1 0 0
chr9:128809666|128809902 hsa-miR-3132 1 0 0
chr9:128809666|128809902 hsa-miR-3175 1 0 0
chr9:128809666|128809902 hsa-miR-4429 1 0 0
chr9:128809666|128809902 hsa-miR-378h 1 0 0
chr9:128809666|128809902 hsa-miR-4505 1 0 0
chr9:128809666|128809902 hsa-miR-2392 1 0 0
chr9:128809666|128809902 hsa-miR-1587 1 0 0
chr9:128809666|128809902 hsa-miR-4539 1 0 0
chr9:128809666|128809902 hsa-miR-4647 1 0 0
chr9:128809666|128809902 hsa-miR-4656 1 0 0
chr9:128809666|128809902 hsa-miR-4658 1 0 0
chr9:128809666|128809902 hsa-miR-4682 1 0 0
chr9:128809666|128809902 hsa-miR-4739 1 0 0
chr9:128809666|128809902 hsa-miR-4784 1 0 0
chr9:128809666|128809902 hsa-miR-5093 1 0 0
chr9:128809666|128809902 hsa-miR-5787 1 0 0
chr9:128809666|128809902 hsa-miR-8070 1 0 0
chr9:128809666|128809902 hsa-miR-8077 1 0 0
chr9:128809666|128809902 hsa-miR-8085 1 0 0
chr9:128809666|128809902 hsa-miR-12119 1 0 0
chr9:128809666|128809902 hsa-miR-12126 1 0 0
chr9:128809666|128809902 hsa-miR-12129 1 0 0
chr9:128809666|128809902 hsa-miR-7106-5p 1 0 0
chr9:128809666|128809902 hsa-miR-6799-5p 1 0 0
chr9:128809666|128809902 hsa-miR-7160-5p 1 0 0
chr9:128809666|128809902 hsa-miR-197-5p 1 0 0
chr9:128809666|128809902 hsa-miR-6772-5p 1 0 0
chr9:128809666|128809902 hsa-miR-6793-5p 1 0 0
chr9:128809666|128809902 hsa-miR-877-3p 1 0 0
chr9:128809666|128809902 hsa-miR-4793-3p 1 0 0
chr9:128809666|128809902 hsa-miR-939-3p 1 0 0
chr9:128809666|128809902 hsa-miR-6742-3p 1 0 0
chr9:128809666|128809902 hsa-miR-1236-3p 1 0 0
chr9:128809666|128809902 hsa-miR-4778-5p 1 0 0
chr9:128809666|128809902 hsa-miR-10400-5p 1 0 0
chr9:128809666|128809902 hsa-miR-4763-3p 1 0 0
chr9:128809666|128809902 hsa-miR-6865-5p 1 0 0
chr9:128809666|128809902 hsa-miR-1343-5p 1 0 0
chr9:128809666|128809902 hsa-miR-6779-5p 1 0 0
chr9:128809666|128809902 hsa-miR-6797-5p 1 0 0
chr9:128809666|128809902 hsa-miR-3620-5p 1 0 0
chr9:128809666|128809902 hsa-miR-5196-5p 1 0 0
chr9:128809666|128809902 hsa-miR-4758-5p 1 0 0
chr9:128809666|128809902 hsa-miR-4646-5p 1 0 0
chr9:128809666|128809902 hsa-miR-6790-5p 1 0 0
chr9:128809666|128809902 hsa-miR-320a-3p 1 0 0
chr9:128809666|128809902 hsa-miR-320b 1 0 0
chr9:128809666|128809902 hsa-miR-320c 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:128809666|128809902
ORF Type ORF1
Protein Length 70
Nucleotide Length 213
Protein Sequence MTSPGERVAQVSRKHHASASSWRSWSQPSSLPIFTLNSSTELRARSARTCSKTRQFLEAWGEEADFDLGK
Nucleotide Sequence CTGACAAGTCCTGGAGAGAGGGTGGCCCAGGTGAGCAGGAAGCATCATGCCTCTGCCTCATCCTGGAGGTCCTGGAGTCAGCCCAGTTCTCTTCCCATCTTTACACTCAATTCCAGTACAGAACTCAGAGCCCGCTCAGCCAGGACCTGCTCGAAAACCAGGCAGTTCCTAGAAGCATGGGGAGAAGAGGCTGACTTTGATCTTGGAAAATGA
CircID chr9:128809666|128809902
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MPLPHPGGPGVSPVLFPSLHSIPVQNSEPAQPGPARKPGSS
Nucleotide Sequence ATGCCTCTGCCTCATCCTGGAGGTCCTGGAGTCAGCCCAGTTCTCTTCCCATCTTTACACTCAATTCCAGTACAGAACTCAGAGCCCGCTCAGCCAGGACCTGCTCGAAAACCAGGCAGTTCCTAG
CircID chr9:128809666|128809902
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MEVLESAQFSSHLYTQFQYRTQSPLSQDLLENQAVPRSMGRRG
Nucleotide Sequence CTGGAGGTCCTGGAGTCAGCCCAGTTCTCTTCCCATCTTTACACTCAATTCCAGTACAGAACTCAGAGCCCGCTCAGCCAGGACCTGCTCGAAAACCAGGCAGTTCCTAGAAGCATGGGGAGAAGAGGCTGA
CircID chr9:128809666|128809902
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MVFEQVLAERALSSVLELSVKMGRELG
Nucleotide Sequence CTGGTTTTCGAGCAGGTCCTGGCTGAGCGGGCTCTGAGTTCTGTACTGGAATTGAGTGTAAAGATGGGAAGAGAACTGGGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab