CircRNA Information

General Information
circRNA Basic Information
CircID chr9:128822425|128822636
Strand +
CircType exon
Host Gene ENSG00000167136.6;
Algorism CIRI2;
Sequence ACCCACAGTCTCACTGGGCTCCACCCTCACTTACTGCCCGCCGTGATGGCCTTGAGGCTGCCTGCCCGCGCCAGGATGTTTGGCACAAAGAGCAGCCCCGAAGCCCGCTCAATGCTCTCGATGGGCACCAGGAAGCGCTCCAGTGGGATGGCCTCATCCACAGGTGCGTTGGGCATCACGTAGGTGCGGAGCTCAATTTGCCCACCTGCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:128822425|128822636 hsa-miR-214-5p 0 0 1
chr9:128822425|128822636 hsa-miR-214-3p 0 0 1
chr9:128822425|128822636 hsa-miR-541-5p 0 0 1
chr9:128822425|128822636 hsa-miR-541-3p 0 0 1
chr9:128822425|128822636 hsa-miR-1227-5p 0 0 1
chr9:128822425|128822636 hsa-miR-1227-3p 0 0 1
chr9:128822425|128822636 hsa-miR-1255a 0 0 1
chr9:128822425|128822636 hsa-miR-654-5p 0 0 1
chr9:128822425|128822636 hsa-miR-516a-3p 0 0 1
chr9:128822425|128822636 hsa-miR-1255b 0 0 1
chr9:128822425|128822636 hsa-miR-663a 1 0 0
chr9:128822425|128822636 hsa-miR-658 1 0 0
chr9:128822425|128822636 hsa-miR-3138 1 0 0
chr9:128822425|128822636 hsa-miR-3141 1 0 0
chr9:128822425|128822636 hsa-miR-3147 1 0 0
chr9:128822425|128822636 hsa-miR-4466 1 0 0
chr9:128822425|128822636 hsa-miR-4467 1 0 0
chr9:128822425|128822636 hsa-miR-3960 1 0 0
chr9:128822425|128822636 hsa-miR-4656 1 0 0
chr9:128822425|128822636 hsa-miR-4706 1 0 0
chr9:128822425|128822636 hsa-miR-4734 1 0 0
chr9:128822425|128822636 hsa-miR-4741 1 0 0
chr9:128822425|128822636 hsa-miR-4767 1 0 0
chr9:128822425|128822636 hsa-miR-5190 1 0 0
chr9:128822425|128822636 hsa-miR-6860 1 0 0
chr9:128822425|128822636 hsa-miR-8072 1 0 0
chr9:128822425|128822636 hsa-miR-4687-3p 1 0 0
chr9:128822425|128822636 hsa-miR-181c-3p 1 0 0
chr9:128822425|128822636 hsa-miR-3180-3p 1 0 0
chr9:128822425|128822636 hsa-miR-6850-5p 1 0 0
chr9:128822425|128822636 hsa-miR-6786-5p 1 0 0
chr9:128822425|128822636 hsa-miR-937-5p 1 0 0
chr9:128822425|128822636 hsa-miR-4750-5p 1 0 0
chr9:128822425|128822636 hsa-miR-10400-5p 1 0 0
chr9:128822425|128822636 hsa-miR-6787-5p 1 0 0
chr9:128822425|128822636 hsa-miR-6752-5p 1 0 0
chr9:128822425|128822636 hsa-miR-6756-5p 1 0 0
chr9:128822425|128822636 hsa-miR-6803-5p 1 0 0
chr9:128822425|128822636 hsa-miR-6751-5p 1 0 0
chr9:128822425|128822636 hsa-miR-10392-5p 1 0 0
chr9:128822425|128822636 hsa-miR-10396b-5p 1 0 0
chr9:128822425|128822636 hsa-miR-328-5p 1 0 0
chr9:128822425|128822636 hsa-miR-6777-5p 1 0 0
chr9:128822425|128822636 hsa-miR-6889-5p 1 0 0
chr9:128822425|128822636 hsa-miR-4758-5p 1 0 0
chr9:128822425|128822636 hsa-miR-3085-5p 1 0 0
chr9:128822425|128822636 hsa-miR-6762-5p 1 0 0
chr9:128822425|128822636 hsa-miR-137-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:128822425|128822636
ORF Type ORF1
Protein Length 49
Nucleotide Length 150
Protein Sequence MPAVMALRLPARARMFGTKSSPEARSMLSMGTRKRSSGMASSTGALGIT
Nucleotide Sequence CTGCCCGCCGTGATGGCCTTGAGGCTGCCTGCCCGCGCCAGGATGTTTGGCACAAAGAGCAGCCCCGAAGCCCGCTCAATGCTCTCGATGGGCACCAGGAAGCGCTCCAGTGGGATGGCCTCATCCACAGGTGCGTTGGGCATCACGTAG
CircID chr9:128822425|128822636
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MPAPGCLAQRAAPKPAQCSRWAPGSAPVGWPHPQVRWASRRCGAQFAHLL
Nucleotide Sequence CTGCCCGCGCCAGGATGTTTGGCACAAAGAGCAGCCCCGAAGCCCGCTCAATGCTCTCGATGGGCACCAGGAAGCGCTCCAGTGGGATGGCCTCATCCACAGGTGCGTTGGGCATCACGTAGGTGCGGAGCTCAATTTGCCCACCTGCTG
CircID chr9:128822425|128822636
ORF Type ORF3
Protein Length 49
Nucleotide Length 150
Protein Sequence MPNAPVDEAIPLERFLVPIESIERASGLLFVPNILARAGSLKAITAGSK
Nucleotide Sequence ATGCCCAACGCACCTGTGGATGAGGCCATCCCACTGGAGCGCTTCCTGGTGCCCATCGAGAGCATTGAGCGGGCTTCGGGGCTGCTCTTTGTGCCAAACATCCTGGCGCGGGCAGGCAGCCTCAAGGCCATCACGGCGGGCAGTAAGTGA
CircID chr9:128822425|128822636
ORF Type ORF4
Protein Length 50
Nucleotide Length 153
Protein Sequence MWMRPSHWSASWCPSRALSGLRGCSLCQTSWRGQAASRPSRRAVSEGGAQ
Nucleotide Sequence CTGTGGATGAGGCCATCCCACTGGAGCGCTTCCTGGTGCCCATCGAGAGCATTGAGCGGGCTTCGGGGCTGCTCTTTGTGCCAAACATCCTGGCGCGGGCAGGCAGCCTCAAGGCCATCACGGCGGGCAGTAAGTGAGGGTGGAGCCCAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab