CircRNA Information

General Information
circRNA Basic Information
CircID chr9:129001529|129001729
Strand +
CircType exon
Host Gene ENSG00000095319.13;
Algorism CIRI2;
Sequence CTGCTGAGTGCGAGCCAGGGTGAGGAGCAGATGCAATGTGGCCTCAGTGAAATGCAGGTTCTGCTTCATGCGAAGGCTCACCTCTAGAGTGGTGAGGAGGGTGGGTAGGATGGGGAGCCTGCGGGTTACCTGCAGCCAGGAGTCACCATCCTCGTCTACCTCACACAGCTCCTTGGCCAGGTGCAGGCCCAGGACACACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:129001529|129001729 hsa-let-7b-5p 0 0 1
chr9:129001529|129001729 hsa-let-7b-3p 0 0 1
chr9:129001529|129001729 hsa-let-7c-5p 0 0 1
chr9:129001529|129001729 hsa-let-7c-3p 0 0 1
chr9:129001529|129001729 hsa-let-7d-5p 0 0 1
chr9:129001529|129001729 hsa-let-7d-3p 0 0 1
chr9:129001529|129001729 hsa-let-7e-5p 0 0 1
chr9:129001529|129001729 hsa-let-7e-3p 0 0 1
chr9:129001529|129001729 hsa-miR-98-5p 0 0 1
chr9:129001529|129001729 hsa-miR-98-3p 0 0 1
chr9:129001529|129001729 hsa-miR-197-5p 0 0 1
chr9:129001529|129001729 hsa-miR-197-3p 0 0 1
chr9:129001529|129001729 hsa-miR-214-5p 0 0 1
chr9:129001529|129001729 hsa-miR-214-3p 0 0 1
chr9:129001529|129001729 hsa-let-7g-5p 0 0 1
chr9:129001529|129001729 hsa-let-7g-3p 0 0 1
chr9:129001529|129001729 hsa-let-7i-5p 0 0 1
chr9:129001529|129001729 hsa-let-7i-3p 0 0 1
chr9:129001529|129001729 hsa-miR-149-5p 0 0 1
chr9:129001529|129001729 hsa-miR-149-3p 0 0 1
chr9:129001529|129001729 hsa-miR-379-5p 0 0 1
chr9:129001529|129001729 hsa-miR-379-3p 0 0 1
chr9:129001529|129001729 hsa-miR-484 0 0 1
chr9:129001529|129001729 hsa-miR-202-5p 0 0 1
chr9:129001529|129001729 hsa-miR-202-3p 0 0 1
chr9:129001529|129001729 hsa-miR-604 0 0 1
chr9:129001529|129001729 hsa-miR-647 0 0 1
chr9:129001529|129001729 hsa-miR-657 0 0 1
chr9:129001529|129001729 hsa-miR-708-5p 0 0 1
chr9:129001529|129001729 hsa-miR-708-3p 0 0 1
chr9:129001529|129001729 hsa-miR-922 0 0 1
chr9:129001529|129001729 hsa-miR-1205 0 0 1
chr9:129001529|129001729 hsa-miR-1294 0 0 1
chr9:129001529|129001729 hsa-miR-512-5p 0 0 1
chr9:129001529|129001729 hsa-miR-28-5p 0 0 1
chr9:129001529|129001729 hsa-miR-767-3p 0 0 1
chr9:129001529|129001729 hsa-miR-518d-5p 0 0 1
chr9:129001529|129001729 hsa-miR-519b-5p 0 0 1
chr9:129001529|129001729 hsa-miR-519c-5p 0 0 1
chr9:129001529|129001729 hsa-miR-520c-5p 0 0 1
chr9:129001529|129001729 hsa-miR-220b 0 0 1
chr9:129001529|129001729 hsa-let-7a 0 0 1
chr9:129001529|129001729 hsa-let-7f 0 0 1
chr9:129001529|129001729 hsa-miR-526a 0 0 1
chr9:129001529|129001729 hsa-miR-4292 1 0 0
chr9:129001529|129001729 hsa-miR-4449 1 0 0
chr9:129001529|129001729 hsa-miR-6860 1 0 0
chr9:129001529|129001729 hsa-miR-15a-3p 1 0 0
chr9:129001529|129001729 hsa-miR-6765-3p 1 0 0
chr9:129001529|129001729 hsa-miR-6772-3p 1 0 0
chr9:129001529|129001729 hsa-miR-7108-3p 1 0 0
chr9:129001529|129001729 hsa-miR-6749-5p 1 0 0
chr9:129001529|129001729 hsa-miR-6804-3p 1 0 0
chr9:129001529|129001729 hsa-miR-4632-3p 1 0 0
chr9:129001529|129001729 hsa-miR-4649-3p 1 0 0
chr9:129001529|129001729 hsa-miR-4750-3p 1 0 0
chr9:129001529|129001729 hsa-miR-500a-3p 1 0 0
chr9:129001529|129001729 hsa-miR-3187-5p 1 0 0
chr9:129001529|129001729 hsa-miR-6724-5p 1 0 0
chr9:129001529|129001729 hsa-miR-504-5p 1 0 0
chr9:129001529|129001729 hsa-miR-330-5p 1 0 0
chr9:129001529|129001729 hsa-miR-502-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:129001529|129001729
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence LLSASQGEEQMQCGLSEMQVLLHAKAHL
Nucleotide Sequence CTGCTGAGTGCGAGCCAGGGTGAGGAGCAGATGCAATGTGGCCTCAGTGAAATGCAGGTTCTGCTTCATGCGAAGGCTCACCTCTAG
CircID chr9:129001529|129001729
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MRRLTSRVVRRVGRMGSLRVTCSQESPSSSTSHSSLARCRPRTH
Nucleotide Sequence ATGCGAAGGCTCACCTCTAGAGTGGTGAGGAGGGTGGGTAGGATGGGGAGCCTGCGGGTTACCTGCAGCCAGGAGTCACCATCCTCGTCTACCTCACACAGCTCCTTGGCCAGGTGCAGGCCCAGGACACAC
CircID chr9:129001529|129001729
ORF Type ORF3
Protein Length 64
Nucleotide Length 192
Protein Sequence MGLHLAKELCEVDEDGDSWLQVTRRLPILPTLLTTLEVSLRMKQNLHFTEATLHLLLTLARTQQ
Nucleotide Sequence CTGGGCCTGCACCTGGCCAAGGAGCTGTGTGAGGTAGACGAGGATGGTGACTCCTGGCTGCAGGTAACCCGCAGGCTCCCCATCCTACCCACCCTCCTCACCACTCTAGAGGTGAGCCTTCGCATGAAGCAGAACCTGCATTTCACTGAGGCCACATTGCATCTGCTCCTCACCCTGGCTCGCACTCAGCAG
CircID chr9:129001529|129001729
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MAAGNPQAPHPTHPPHHSRGEPSHEAEPAFH
Nucleotide Sequence CTGGCTGCAGGTAACCCGCAGGCTCCCCATCCTACCCACCCTCCTCACCACTCTAGAGGTGAGCCTTCGCATGAAGCAGAACCTGCATTTCACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab