CircRNA Information

General Information
circRNA Basic Information
CircID chr9:129098109|129098347
Strand +
CircType exon
Host Gene ENSG00000095321.15;
Algorism CIRI2;
Sequence CGTGATGGTGTTCCACCATTTTGGAAAAGACTTCCCCAAGTCGGAGAAGCTAAGCCCAGATGCCTTCATCCAGATGGCTTTGCAGCTGGCCTACTACAGGTGCGCCTCTGTGGCCCACCCATGGAGGAGGGAGGAGACCTGGGGGCAGGGGAGGGGGTGCCCGCCTCCAAGGGGCGTGCTTAGCCCCATTTCCCACCAGGATCTACGGACAGGCATGTGCCACCTATGAAAGTGCCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:129098109|129098347 hsa-miR-376b-5p 0 0 1
chr9:129098109|129098347 hsa-miR-376b-3p 0 0 1
chr9:129098109|129098347 hsa-miR-432-5p 0 0 1
chr9:129098109|129098347 hsa-miR-432-3p 0 0 1
chr9:129098109|129098347 hsa-miR-522-5p 0 0 1
chr9:129098109|129098347 hsa-miR-522-3p 0 0 1
chr9:129098109|129098347 hsa-miR-527 0 0 1
chr9:129098109|129098347 hsa-miR-612 1 0 1
chr9:129098109|129098347 hsa-miR-650 0 0 1
chr9:129098109|129098347 hsa-miR-1264 0 0 1
chr9:129098109|129098347 hsa-miR-541-5p 0 0 1
chr9:129098109|129098347 hsa-miR-541-3p 0 0 1
chr9:129098109|129098347 hsa-miR-1293 0 0 1
chr9:129098109|129098347 hsa-miR-1255a 0 0 1
chr9:129098109|129098347 hsa-miR-654-5p 0 1 1
chr9:129098109|129098347 hsa-miR-361-3p 0 1 1
chr9:129098109|129098347 hsa-miR-331-3p 0 0 1
chr9:129098109|129098347 hsa-miR-324-3p 0 0 1
chr9:129098109|129098347 hsa-miR-518a-5p 0 0 1
chr9:129098109|129098347 hsa-miR-1255b 0 0 1
chr9:129098109|129098347 hsa-miR-1308 0 0 1
chr9:129098109|129098347 hsa-miR-1285 0 0 1
chr9:129098109|129098347 hsa-miR-768-5p 0 0 1
chr9:129098109|129098347 hsa-miR-376a 0 0 1
chr9:129098109|129098347 hsa-miR-1202 1 0 0
chr9:129098109|129098347 hsa-miR-1913 0 1 0
chr9:129098109|129098347 hsa-miR-4279 0 1 0
chr9:129098109|129098347 hsa-miR-3612 0 1 0
chr9:129098109|129098347 hsa-miR-378g 0 1 0
chr9:129098109|129098347 hsa-miR-4489 0 1 0
chr9:129098109|129098347 hsa-miR-4698 0 1 0
chr9:129098109|129098347 hsa-miR-4767 1 0 0
chr9:129098109|129098347 hsa-miR-5093 0 1 0
chr9:129098109|129098347 hsa-miR-5193 0 1 0
chr9:129098109|129098347 hsa-miR-9899 1 0 0
chr9:129098109|129098347 hsa-miR-12126 0 1 0
chr9:129098109|129098347 hsa-miR-6749-3p 1 1 0
chr9:129098109|129098347 hsa-miR-214-5p 0 1 0
chr9:129098109|129098347 hsa-miR-18a-3p 0 1 0
chr9:129098109|129098347 hsa-miR-323a-5p 1 0 0
chr9:129098109|129098347 hsa-miR-4726-3p 1 1 0
chr9:129098109|129098347 hsa-miR-27a-5p 0 1 0
chr9:129098109|129098347 hsa-miR-6089 1 0 0
chr9:129098109|129098347 hsa-miR-4695-5p 1 0 0
chr9:129098109|129098347 hsa-miR-6716-5p 0 1 0
chr9:129098109|129098347 hsa-miR-5008-5p 1 0 0
chr9:129098109|129098347 hsa-miR-1226-5p 1 1 0
chr9:129098109|129098347 hsa-miR-4640-5p 1 0 0
chr9:129098109|129098347 hsa-miR-3667-3p 1 1 0
chr9:129098109|129098347 hsa-miR-889-5p 1 0 0
chr9:129098109|129098347 hsa-miR-4667-3p 0 1 0
chr9:129098109|129098347 hsa-miR-4640-3p 0 1 0
chr9:129098109|129098347 hsa-miR-664b-5p 0 1 0
chr9:129098109|129098347 hsa-miR-6887-3p 0 1 0
chr9:129098109|129098347 hsa-miR-6752-3p 0 1 0
chr9:129098109|129098347 hsa-miR-605-3p 0 1 0
chr9:129098109|129098347 hsa-miR-891a-3p 1 1 0
chr9:129098109|129098347 hsa-miR-4749-3p 0 1 0
chr9:129098109|129098347 hsa-miR-5589-3p 0 1 0
chr9:129098109|129098347 hsa-miR-20b-3p 0 1 0
chr9:129098109|129098347 hsa-miR-6748-3p 0 1 0
chr9:129098109|129098347 hsa-miR-1233-5p 1 0 0
chr9:129098109|129098347 hsa-miR-6756-5p 1 1 0
chr9:129098109|129098347 hsa-miR-1249-5p 1 0 0
chr9:129098109|129098347 hsa-miR-4685-3p 0 1 0
chr9:129098109|129098347 hsa-miR-3620-5p 1 0 0
chr9:129098109|129098347 hsa-miR-6780b-5p 0 1 0
chr9:129098109|129098347 hsa-miR-4726-5p 1 0 0
chr9:129098109|129098347 hsa-miR-6736-5p 1 1 0
chr9:129098109|129098347 hsa-miR-4646-5p 0 1 0
chr9:129098109|129098347 hsa-miR-6756-3p 0 1 0
chr9:129098109|129098347 hsa-miR-6801-3p 0 1 0
chr9:129098109|129098347 hsa-miR-6810-3p 1 1 0
chr9:129098109|129098347 hsa-miR-4691-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:129098109|129098347
ORF Type ORF1
Protein Length 74
Nucleotide Length 225
Protein Sequence MVFHHFGKDFPKSEKLSPDAFIQMALQLAYYRCASVAHPWRREETWGQGRGCPPPRGVLSPISHQDLRTGMCHL
Nucleotide Sequence ATGGTGTTCCACCATTTTGGAAAAGACTTCCCCAAGTCGGAGAAGCTAAGCCCAGATGCCTTCATCCAGATGGCTTTGCAGCTGGCCTACTACAGGTGCGCCTCTGTGGCCCACCCATGGAGGAGGGAGGAGACCTGGGGGCAGGGGAGGGGGTGCCCGCCTCCAAGGGGCGTGCTTAGCCCCATTTCCCACCAGGATCTACGGACAGGCATGTGCCACCTATGA
CircID chr9:129098109|129098347
ORF Type ORF2
Protein Length 60
Nucleotide Length 180
Protein Sequence MPSSRWLCSWPTTGAPLWPTHGGGRRPGGRGGGARLQGACLAPFPTRIYGQACATYESAS
Nucleotide Sequence ATGCCTTCATCCAGATGGCTTTGCAGCTGGCCTACTACAGGTGCGCCTCTGTGGCCCACCCATGGAGGAGGGAGGAGACCTGGGGGCAGGGGAGGGGGTGCCCGCCTCCAAGGGGCGTGCTTAGCCCCATTTCCCACCAGGATCTACGGACAGGCATGTGCCACCTATGAAAGTGCCTCC
CircID chr9:129098109|129098347
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MEAGTPSPAPRSPPSSMGGPQRRTCSRPAAKPSG
Nucleotide Sequence TTGGAGGCGGGCACCCCCTCCCCTGCCCCCAGGTCTCCTCCCTCCTCCATGGGTGGGCCACAGAGGCGCACCTGTAGTAGGCCAGCTGCAAAGCCATCTGGATGA
CircID chr9:129098109|129098347
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MVGNGAKHAPWRRAPPPLPPGLLPPPWVGHRGAPVVGQLQSHLDEGIWA
Nucleotide Sequence CTGGTGGGAAATGGGGCTAAGCACGCCCCTTGGAGGCGGGCACCCCCTCCCCTGCCCCCAGGTCTCCTCCCTCCTCCATGGGTGGGCCACAGAGGCGCACCTGTAGTAGGCCAGCTGCAAAGCCATCTGGATGAAGGCATCTGGGCTTAG
CircID chr9:129098109|129098347
ORF Type ORF5
Protein Length 40
Nucleotide Length 123
Protein Sequence MPVRRSWWEMGLSTPLGGGHPLPCPQVSSLLHGWATEAHL
Nucleotide Sequence ATGCCTGTCCGTAGATCCTGGTGGGAAATGGGGCTAAGCACGCCCCTTGGAGGCGGGCACCCCCTCCCCTGCCCCCAGGTCTCCTCCCTCCTCCATGGGTGGGCCACAGAGGCGCACCTGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab