CircRNA Information

General Information
circRNA Basic Information
CircID chr9:129504788|129504970
Strand +
CircType exon
Host Gene ENSG00000204054.10;
Algorism CIRI2;
Sequence CTGTGCAGGCACTGTCCGAGGGGTTGGGGGCATAGCCCACAACCGAACAAAGTCTTGCCCTCACAGAGCTCGGGTGCCACTGTGGGAGAGCAGGAAATTAATAAATGAGTAATTTATGACATAAAATGTCAGGTGACAGAGGCTATGCAGGAAGAGGAAAGAGACGGGGTGGTCAGGGAAAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:129504788|129504970 hsa-miR-31-5p 0 0 1
chr9:129504788|129504970 hsa-miR-31-3p 0 0 1
chr9:129504788|129504970 hsa-miR-150-5p 0 0 1
chr9:129504788|129504970 hsa-miR-150-3p 0 0 1
chr9:129504788|129504970 hsa-miR-370-5p 0 0 1
chr9:129504788|129504970 hsa-miR-370-3p 0 0 1
chr9:129504788|129504970 hsa-miR-375-5p 0 0 1
chr9:129504788|129504970 hsa-miR-375-3p 0 0 1
chr9:129504788|129504970 hsa-miR-519e-5p 0 0 1
chr9:129504788|129504970 hsa-miR-519e-3p 0 0 1
chr9:129504788|129504970 hsa-miR-1236-5p 0 0 1
chr9:129504788|129504970 hsa-miR-1236-3p 0 0 1
chr9:129504788|129504970 hsa-miR-1238-5p 0 0 1
chr9:129504788|129504970 hsa-miR-1238-3p 0 0 1
chr9:129504788|129504970 hsa-miR-1294 0 0 1
chr9:129504788|129504970 hsa-miR-532-3p 0 0 1
chr9:129504788|129504970 hsa-miR-188-3p 0 0 1
chr9:129504788|129504970 hsa-miR-125a-5p 1 0 1
chr9:129504788|129504970 hsa-miR-515-3p 0 0 1
chr9:129504788|129504970 hsa-miR-1274a 0 0 1
chr9:129504788|129504970 hsa-miR-128 0 0 1
chr9:129504788|129504970 hsa-miR-125b 0 0 1
chr9:129504788|129504970 hsa-miR-550 0 0 1
chr9:129504788|129504970 hsa-miR-153 0 0 1
chr9:129504788|129504970 hsa-miR-1200 1 0 0
chr9:129504788|129504970 hsa-miR-1248 1 0 0
chr9:129504788|129504970 hsa-miR-4322 0 1 0
chr9:129504788|129504970 hsa-miR-4265 0 1 0
chr9:129504788|129504970 hsa-miR-3917 0 1 0
chr9:129504788|129504970 hsa-miR-128-3p 0 1 0
chr9:129504788|129504970 hsa-miR-6875-3p 1 0 0
chr9:129504788|129504970 hsa-miR-3189-5p 1 0 0
chr9:129504788|129504970 hsa-miR-6849-3p 1 0 0
chr9:129504788|129504970 hsa-miR-7110-3p 1 0 0
chr9:129504788|129504970 hsa-miR-6845-3p 1 0 0
chr9:129504788|129504970 hsa-miR-877-3p 1 0 0
chr9:129504788|129504970 hsa-miR-4753-3p 1 1 0
chr9:129504788|129504970 hsa-miR-4436b-5p 1 0 0
chr9:129504788|129504970 hsa-miR-1226-5p 0 1 0
chr9:129504788|129504970 hsa-miR-6763-3p 1 0 0
chr9:129504788|129504970 hsa-miR-4707-3p 1 0 0
chr9:129504788|129504970 hsa-miR-7113-3p 1 1 0
chr9:129504788|129504970 hsa-miR-3667-3p 1 0 0
chr9:129504788|129504970 hsa-miR-6821-3p 1 0 0
chr9:129504788|129504970 hsa-miR-6830-3p 1 0 0
chr9:129504788|129504970 hsa-miR-4638-3p 1 0 0
chr9:129504788|129504970 hsa-miR-4446-5p 1 1 0
chr9:129504788|129504970 hsa-miR-378a-5p 1 0 0
chr9:129504788|129504970 hsa-miR-6776-3p 0 1 0
chr9:129504788|129504970 hsa-miR-103b 0 1 0
chr9:129504788|129504970 hsa-miR-339-5p 1 0 0
chr9:129504788|129504970 hsa-miR-6825-3p 1 0 0
chr9:129504788|129504970 hsa-miR-3190-5p 1 0 0
chr9:129504788|129504970 hsa-miR-4732-3p 1 1 0
chr9:129504788|129504970 hsa-miR-3619-3p 1 0 0
chr9:129504788|129504970 hsa-miR-6793-3p 1 1 0
chr9:129504788|129504970 hsa-miR-1224-3p 1 0 0
chr9:129504788|129504970 hsa-miR-2276-5p 1 1 0
chr9:129504788|129504970 hsa-miR-6895-3p 1 0 0
chr9:129504788|129504970 hsa-miR-3605-3p 1 0 0
chr9:129504788|129504970 hsa-miR-216a-3p 0 1 0
chr9:129504788|129504970 hsa-miR-891a-3p 0 1 0
chr9:129504788|129504970 hsa-miR-6826-3p 1 0 0
chr9:129504788|129504970 hsa-miR-6802-3p 1 0 0
chr9:129504788|129504970 hsa-miR-3124-3p 1 1 0
chr9:129504788|129504970 hsa-miR-130b-5p 1 1 0
chr9:129504788|129504970 hsa-miR-4750-3p 1 0 0
chr9:129504788|129504970 hsa-miR-6734-3p 1 0 0
chr9:129504788|129504970 hsa-miR-6732-3p 1 0 0
chr9:129504788|129504970 hsa-miR-4677-3p 0 1 0
chr9:129504788|129504970 hsa-miR-6808-3p 1 0 0
chr9:129504788|129504970 hsa-miR-3127-3p 1 0 0
chr9:129504788|129504970 hsa-miR-6877-3p 0 1 0
chr9:129504788|129504970 hsa-miR-2682-3p 1 0 0
chr9:129504788|129504970 hsa-miR-4757-5p 0 1 0
chr9:129504788|129504970 hsa-miR-6784-3p 1 0 0
chr9:129504788|129504970 hsa-miR-10392-3p 1 0 0
chr9:129504788|129504970 hsa-miR-11181-5p 1 0 0
chr9:129504788|129504970 hsa-miR-3059-5p 0 1 0
chr9:129504788|129504970 hsa-miR-3622a-3p 0 1 0
chr9:129504788|129504970 hsa-miR-6511b-3p 1 0 0
chr9:129504788|129504970 hsa-miR-6819-3p 0 1 0
chr9:129504788|129504970 hsa-miR-33b-3p 0 1 0
chr9:129504788|129504970 hsa-miR-5006-3p 1 0 0
chr9:129504788|129504970 hsa-miR-6827-3p 1 1 0
chr9:129504788|129504970 hsa-miR-5699-3p 1 0 0
chr9:129504788|129504970 hsa-miR-340-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:129504788|129504970
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence LCRHCPRGWGHSPQPNKVLPSQSSGATVGEQEINK
Nucleotide Sequence CTGTGCAGGCACTGTCCGAGGGGTTGGGGGCATAGCCCACAACCGAACAAAGTCTTGCCCTCACAGAGCTCGGGTGCCACTGTGGGAGAGCAGGAAATTAATAAATGA
CircID chr9:129504788|129504970
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MHSLCHLTFYVINYSFINFLLSHSGTRAL
Nucleotide Sequence CTGCATAGCCTCTGTCACCTGACATTTTATGTCATAAATTACTCATTTATTAATTTCCTGCTCTCCCACAGTGGCACCCGAGCTCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab