CircRNA Information

General Information
circRNA Basic Information
CircID chr9:129881375|129881560
Strand +
CircType exon
Host Gene ENSG00000136878.11;
Algorism CIRI2;
Sequence CTGCTTCTACAAAGACTGATAGAAACAAAGACGCAGTAGTGTGGGGGGTCTGGTCCCAGAGCCCCTTCCCCACCCACGCCCCGTCTGCTTTGATCCTGATGATGGTCGCACCTCGCCCTGGCGGTTTCTCCAGGGGCTTTGGTGCCTTGCTGTGCTCAGTGGCTCCCTCCACTCAGCATCCAGAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:129881375|129881560 hsa-miR-326 0 1 1
chr9:129881375|129881560 hsa-miR-506-5p 0 0 1
chr9:129881375|129881560 hsa-miR-506-3p 0 0 1
chr9:129881375|129881560 hsa-miR-622 0 0 1
chr9:129881375|129881560 hsa-miR-760 0 1 1
chr9:129881375|129881560 hsa-miR-1293 0 0 1
chr9:129881375|129881560 hsa-miR-491-5p 0 0 1
chr9:129881375|129881560 hsa-miR-330-3p 0 1 1
chr9:129881375|129881560 hsa-miR-483-5p 0 0 1
chr9:129881375|129881560 hsa-miR-331-3p 0 1 1
chr9:129881375|129881560 hsa-miR-330-5p 0 1 1
chr9:129881375|129881560 hsa-miR-124 0 0 1
chr9:129881375|129881560 hsa-miR-1268 0 0 1
chr9:129881375|129881560 hsa-miR-1268a 0 1 0
chr9:129881375|129881560 hsa-miR-2110 0 1 0
chr9:129881375|129881560 hsa-miR-3154 1 1 0
chr9:129881375|129881560 hsa-miR-4254 0 1 0
chr9:129881375|129881560 hsa-miR-4252 0 1 0
chr9:129881375|129881560 hsa-miR-1268b 1 1 0
chr9:129881375|129881560 hsa-miR-4466 1 0 0
chr9:129881375|129881560 hsa-miR-4479 1 0 0
chr9:129881375|129881560 hsa-miR-4634 1 0 0
chr9:129881375|129881560 hsa-miR-4706 1 0 0
chr9:129881375|129881560 hsa-miR-6085 0 1 0
chr9:129881375|129881560 hsa-miR-6090 1 0 0
chr9:129881375|129881560 hsa-miR-6127 0 1 0
chr9:129881375|129881560 hsa-miR-8077 0 1 0
chr9:129881375|129881560 hsa-miR-8089 0 1 0
chr9:129881375|129881560 hsa-miR-12115 0 1 0
chr9:129881375|129881560 hsa-miR-211-3p 1 0 0
chr9:129881375|129881560 hsa-miR-135a-3p 1 0 0
chr9:129881375|129881560 hsa-miR-505-5p 0 1 0
chr9:129881375|129881560 hsa-miR-6741-5p 1 1 0
chr9:129881375|129881560 hsa-miR-6776-5p 0 1 0
chr9:129881375|129881560 hsa-miR-1292-5p 1 0 0
chr9:129881375|129881560 hsa-miR-6748-5p 1 1 0
chr9:129881375|129881560 hsa-miR-4655-3p 1 0 0
chr9:129881375|129881560 hsa-miR-6827-5p 0 1 0
chr9:129881375|129881560 hsa-miR-6798-5p 1 0 0
chr9:129881375|129881560 hsa-miR-5006-5p 1 1 0
chr9:129881375|129881560 hsa-miR-6786-5p 1 0 0
chr9:129881375|129881560 hsa-miR-5088-5p 0 1 0
chr9:129881375|129881560 hsa-miR-6771-5p 1 0 0
chr9:129881375|129881560 hsa-miR-4690-5p 1 1 0
chr9:129881375|129881560 hsa-miR-7854-3p 1 0 0
chr9:129881375|129881560 hsa-miR-4708-3p 0 1 0
chr9:129881375|129881560 hsa-miR-381-5p 0 1 0
chr9:129881375|129881560 hsa-miR-1233-5p 1 0 0
chr9:129881375|129881560 hsa-miR-4763-3p 1 0 0
chr9:129881375|129881560 hsa-miR-6769b-5p 0 1 0
chr9:129881375|129881560 hsa-miR-6816-5p 1 0 0
chr9:129881375|129881560 hsa-miR-6775-5p 1 1 0
chr9:129881375|129881560 hsa-miR-1343-5p 1 0 0
chr9:129881375|129881560 hsa-miR-6756-5p 1 1 0
chr9:129881375|129881560 hsa-miR-6803-5p 1 0 0
chr9:129881375|129881560 hsa-miR-6813-5p 0 1 0
chr9:129881375|129881560 hsa-miR-6851-5p 1 0 0
chr9:129881375|129881560 hsa-miR-1249-5p 0 1 0
chr9:129881375|129881560 hsa-miR-6779-5p 1 0 0
chr9:129881375|129881560 hsa-miR-6797-5p 1 1 0
chr9:129881375|129881560 hsa-miR-7111-5p 1 0 0
chr9:129881375|129881560 hsa-miR-5196-5p 1 1 0
chr9:129881375|129881560 hsa-miR-6780b-5p 0 1 0
chr9:129881375|129881560 hsa-miR-4649-5p 1 1 0
chr9:129881375|129881560 hsa-miR-4685-5p 1 1 0
chr9:129881375|129881560 hsa-miR-4725-3p 0 1 0
chr9:129881375|129881560 hsa-miR-6729-5p 1 1 0
chr9:129881375|129881560 hsa-miR-4723-5p 1 1 0
chr9:129881375|129881560 hsa-miR-6885-5p 1 0 0
chr9:129881375|129881560 hsa-miR-939-5p 1 0 0
chr9:129881375|129881560 hsa-miR-1238-5p 0 1 0
chr9:129881375|129881560 hsa-miR-4758-5p 1 1 0
chr9:129881375|129881560 hsa-miR-6511a-5p 1 0 0
chr9:129881375|129881560 hsa-miR-3940-5p 1 0 0
chr9:129881375|129881560 hsa-miR-4747-5p 0 1 0
chr9:129881375|129881560 hsa-miR-6837-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:129881375|129881560
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MVPEPLPHPRPVCFDPDDGRTSPWRFLQGLWCLAVLSGSLHSASR
Nucleotide Sequence CTGGTCCCAGAGCCCCTTCCCCACCCACGCCCCGTCTGCTTTGATCCTGATGATGGTCGCACCTCGCCCTGGCGGTTTCTCCAGGGGCTTTGGTGCCTTGCTGTGCTCAGTGGCTCCCTCCACTCAGCATCCAGA
CircID chr9:129881375|129881560
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MILMMVAPRPGGFSRGFGALLCSVAPSTQHPE
Nucleotide Sequence TTGATCCTGATGATGGTCGCACCTCGCCCTGGCGGTTTCTCCAGGGGCTTTGGTGCCTTGCTGTGCTCAGTGGCTCCCTCCACTCAGCATCCAGAG
CircID chr9:129881375|129881560
ORF Type ORF3
Protein Length 58
Nucleotide Length 177
Protein Sequence MDAEWREPLSTARHQSPWRNRQGEVRPSSGSKQTGRGWGRGSGTRPPTLLRLCFYQSL
Nucleotide Sequence CTGGATGCTGAGTGGAGGGAGCCACTGAGCACAGCAAGGCACCAAAGCCCCTGGAGAAACCGCCAGGGCGAGGTGCGACCATCATCAGGATCAAAGCAGACGGGGCGTGGGTGGGGAAGGGGCTCTGGGACCAGACCCCCCACACTACTGCGTCTTTGTTTCTATCAGTCTTTGTAG
CircID chr9:129881375|129881560
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MEKPPGRGATIIRIKADGAWVGKGLWDQTPHTTASLFLSVFVEA
Nucleotide Sequence CTGGAGAAACCGCCAGGGCGAGGTGCGACCATCATCAGGATCAAAGCAGACGGGGCGTGGGTGGGGAAGGGGCTCTGGGACCAGACCCCCCACACTACTGCGTCTTTGTTTCTATCAGTCTTTGTAGAAGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab