CircRNA Information

General Information
circRNA Basic Information
CircID chr9:129924960|129994958
Strand -
CircType exon
Host Gene ENSG00000187239.16;
Algorism find_circ;CIRI2;DCC;
Sequence GATCAGTTTGACAACTTAGAAAAACACACACAGTGGGGAATTGATATTCTTGAGAAATATATCAAGTTTGTGAAAGAAAGGACAGAGATTGAACTCAGCTATGCAAAGCAACTCAGGAATCTTTCAAAGAAGTACCAACCTAAAAAGAACTCGAAGGAGGAAGAAGAATACAAGTATACGTCATGTAAAGCTTTCATTTCCAACCTGAACGAAATGAATGATTACGCAGGGCAGCATGAAGTTATCTCCGAGAACATGGCATCACAGATCATTGTGGACTTGGCACGCTATGTTCAGGAACTGAAACAGGAGAGGAAATCAGTAAGCAAAACTTTATTCTTTTTCTTCCTAAAAGATGGACCAAACACAGTGGGAATATCCCTAGAAGATTAAAATTAAATAAAACCATATAAGACTATGGGTCTTAAACTCATACCTTAACTTTCACGATGGCCGTAAAGCACAGCAGCACATCGAGACTTGCTGGAAGCAGCTTGAATCTAGTAAAAGGCGATTTGAACGCGATTGCAAAGAGGCGGACAGGGCGCAGCAGTACTTTGAGAAAATGGACGCTGACATCAATGTCACAAAAGCGGATGTTGAAAAGTTGTGAAAGTGGCAAGTTTAATTTTGTCCACAAAATGAGGTCCATGGCTCAGGTAGTTTGGGGAGGAGGGAATCGGGATCGGTGCTGTGCTGGATTCTTGCTGTGTCCCCAGCCTCTGGGTGGCCGCCAGGCCCATCTGCCAGTCAGGAGGAGCTGCTGCAGGTTGCTGCTCACTGAATAATGATTACAGGCATCCTGTTTTCTAGGCTGGACTGTAGACATGTTGGTCCTTATTCAGCGTCTTCCACAGTTCACGTCTAGGGCCCGCCCGACAACAAGCTCAAATACGTCACCAAATGGCAGAGGACAGCAAAGCAGATTACTCATCCATTCTCCAGAAATTCAACCATGAGCAGCATGAATATTACCATACTCACATCCCCAACATCTTCCAGAAAATACAAGAGATGGAGGAAAGGAGGATTGTGAGAATGGGAGAGTCCATGAAGACATATGCAGAGGTTGATCGGCAGGTGATCCCAATCATTGGGAAGTGCCTGGATGGAATAGTAAAAGCAGCCGAATCAATTGATCAGAAAAATGATTCACAGCTGGTAATAGAAGCTTATAAATCAGGGTTTGAGCCTCCTGGAGACATTGAATTTGAGGATTACACTCAGCCAATGAAGCGCACTGTGTCAGATAACAGCCTTTCAAATTCCAGAGGAGAAGGCAAACCAGACCTCAAATTTGGTGGCAAATCCAAAGGAAAGTTATGGCCGTTCATCAAAAAAAATAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:129924960|129994958 hsa-miR-638 1 1 1
chr9:129924960|129994958 hsa-miR-765 1 1 1
chr9:129924960|129994958 hsa-miR-3138 1 1 1
chr9:129924960|129994958 hsa-miR-3154 1 1 1
chr9:129924960|129994958 hsa-miR-3178 1 1 1
chr9:129924960|129994958 hsa-miR-3185 1 1 1
chr9:129924960|129994958 hsa-miR-3907 1 1 1
chr9:129924960|129994958 hsa-miR-3918 1 1 1
chr9:129924960|129994958 hsa-miR-5093 1 1 1
chr9:129924960|129994958 hsa-miR-7706 1 1 1
chr9:129924960|129994958 hsa-miR-138-5p 1 1 1
chr9:129924960|129994958 hsa-miR-105-3p 1 1 1
chr9:129924960|129994958 hsa-miR-141-5p 1 1 1
chr9:129924960|129994958 hsa-miR-510-5p 1 1 1
chr9:129924960|129994958 hsa-miR-512-5p 1 1 1
chr9:129924960|129994958 hsa-miR-4433a-3p 1 1 1
chr9:129924960|129994958 hsa-miR-3150a-3p 1 1 1
chr9:129924960|129994958 hsa-miR-7106-5p 1 1 1
chr9:129924960|129994958 hsa-miR-6825-5p 1 1 1
chr9:129924960|129994958 hsa-miR-6894-5p 1 1 1
chr9:129924960|129994958 hsa-miR-125a-3p 1 1 1
chr9:129924960|129994958 hsa-miR-182-5p 1 1 1
chr9:129924960|129994958 hsa-miR-6799-5p 1 1 1
chr9:129924960|129994958 hsa-miR-766-5p 1 1 1
chr9:129924960|129994958 hsa-miR-6833-5p 1 1 1
chr9:129924960|129994958 hsa-miR-4695-5p 1 1 1
chr9:129924960|129994958 hsa-miR-4459 1 1 1
chr9:129924960|129994958 hsa-miR-6741-5p 1 1 1
chr9:129924960|129994958 hsa-miR-6721-5p 1 1 1
chr9:129924960|129994958 hsa-miR-6776-5p 1 1 1
chr9:129924960|129994958 hsa-miR-6716-5p 1 1 1
chr9:129924960|129994958 hsa-miR-6087 1 1 1
chr9:129924960|129994958 hsa-miR-1224-5p 1 1 1
chr9:129924960|129994958 hsa-miR-3150b-3p 1 1 1
chr9:129924960|129994958 hsa-miR-6810-5p 1 1 1
chr9:129924960|129994958 hsa-miR-3934-3p 1 1 1
chr9:129924960|129994958 hsa-miR-6740-5p 1 1 1
chr9:129924960|129994958 hsa-miR-885-3p 1 1 1
chr9:129924960|129994958 hsa-miR-6771-5p 1 1 1
chr9:129924960|129994958 hsa-miR-6847-5p 1 1 1
chr9:129924960|129994958 hsa-miR-425-3p 1 1 1
chr9:129924960|129994958 hsa-miR-7846-3p 1 1 1
chr9:129924960|129994958 hsa-miR-1250-5p 1 1 1
chr9:129924960|129994958 hsa-miR-5004-5p 1 1 1
chr9:129924960|129994958 hsa-miR-5585-5p 1 1 1
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:129924960|129994958
ORF Type ORF1
Protein Length 148
Nucleotide Length 444
Protein Sequence MAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQVIPIIGKCLDGIVKAAESIDQKNDSQLVIEAYKSGFEPPGDIEFEDYTQPMKRTVSDNSLSNSRGEGKPDLKFGGKSKGKLWPFIKKNK
Nucleotide Sequence ATGGCAGAGGACAGCAAAGCAGATTACTCATCCATTCTCCAGAAATTCAACCATGAGCAGCATGAATATTACCATACTCACATCCCCAACATCTTCCAGAAAATACAAGAGATGGAGGAAAGGAGGATTGTGAGAATGGGAGAGTCCATGAAGACATATGCAGAGGTTGATCGGCAGGTGATCCCAATCATTGGGAAGTGCCTGGATGGAATAGTAAAAGCAGCCGAATCAATTGATCAGAAAAATGATTCACAGCTGGTAATAGAAGCTTATAAATCAGGGTTTGAGCCTCCTGGAGACATTGAATTTGAGGATTACACTCAGCCAATGAAGCGCACTGTGTCAGATAACAGCCTTTCAAATTCCAGAGGAGAAGGCAAACCAGACCTCAAATTTGGTGGCAAATCCAAAGGAAAGTTATGGCCGTTCATCAAAAAAAATAAG
CircID chr9:129924960|129994958
ORF Type ORF2
Protein Length 113
Nucleotide Length 339
Protein Sequence MAVKHSSTSRLAGSSLNLVKGDLNAIAKRRTGRSSTLRKWTLTSMSQKRMLKSCESGKFNFVHKMRSMAQVVWGGGNRDRCCAGFLLCPQPLGGRQAHLPVRRSCCRLLLTE*
Nucleotide Sequence ATGGCCGTAAAGCACAGCAGCACATCGAGACTTGCTGGAAGCAGCTTGAATCTAGTAAAAGGCGATTTGAACGCGATTGCAAAGAGGCGGACAGGGCGCAGCAGTACTTTGAGAAAATGGACGCTGACATCAATGTCACAAAAGCGGATGTTGAAAAGTTGTGAAAGTGGCAAGTTTAATTTTGTCCACAAAATGAGGTCCATGGCTCAGGTAGTTTGGGGAGGAGGGAATCGGGATCGGTGCTGTGCTGGATTCTTGCTGTGTCCCCAGCCTCTGGGTGGCCGCCAGGCCCATCTGCCAGTCAGGAGGAGCTGCTGCAGGTTGCTGCTCACTGAATAA
CircID chr9:129924960|129994958
ORF Type ORF3
Protein Length 74
Nucleotide Length 222
Protein Sequence MDLILWTKLNLPLSQLFNIRFCDIDVSVHFLKVLLRPVRLFAIAFKSPFTRFKLLPASLDVLLCFTAIVKVKV*
Nucleotide Sequence ATGGACCTCATTTTGTGGACAAAATTAAACTTGCCACTTTCACAACTTTTCAACATCCGCTTTTGTGACATTGATGTCAGCGTCCATTTTCTCAAAGTACTGCTGCGCCCTGTCCGCCTCTTTGCAATCGCGTTCAAATCGCCTTTTACTAGATTCAAGCTGCTTCCAGCAAGTCTCGATGTGCTGCTGTGCTTTACGGCCATCGTGAAAGTTAAGGTATGA
CircID chr9:129924960|129994958
ORF Type ORF4
Protein Length 60
Nucleotide Length 180
Protein Sequence MNDYAGQHEVISENMASQIIVDLARYVQELKQERKSVSKTLFFFFLKDGPNTVGISLED*
Nucleotide Sequence ATGAATGATTACGCAGGGCAGCATGAAGTTATCTCCGAGAACATGGCATCACAGATCATTGTGGACTTGGCACGCTATGTTCAGGAACTGAAACAGGAGAGGAAATCAGTAAGCAAAACTTTATTCTTTTTCTTCCTAAAAGATGGACCAAACACAGTGGGAATATCCCTAGAAGATTAA
CircID chr9:129924960|129994958
ORF Type ORF5
Protein Length 58
Nucleotide Length 174
Protein Sequence MSTVQPRKQDACNHYSVSSNLQQLLLTGRWAWRPPRGWGHSKNPAQHRSRFPPPQTT*
Nucleotide Sequence ATGTCTACAGTCCAGCCTAGAAAACAGGATGCCTGTAATCATTATTCAGTGAGCAGCAACCTGCAGCAGCTCCTCCTGACTGGCAGATGGGCCTGGCGGCCACCCAGAGGCTGGGGACACAGCAAGAATCCAGCACAGCACCGATCCCGATTCCCTCCTCCCCAAACTACCTGA
CircID chr9:129924960|129994958
ORF Type ORF6
Protein Length 53
Nucleotide Length 159
Protein Sequence MGLAATQRLGTQQESSTAPIPIPSSPNYLSHGPHFVDKIKLATFTTFQHPLL*
Nucleotide Sequence ATGGGCCTGGCGGCCACCCAGAGGCTGGGGACACAGCAAGAATCCAGCACAGCACCGATCCCGATTCCCTCCTCCCCAAACTACCTGAGCCATGGACCTCATTTTGTGGACAAAATTAAACTTGCCACTTTCACAACTTTTCAACATCCGCTTTTGTGA
CircID chr9:129924960|129994958
ORF Type ORF7
Protein Length 47
Nucleotide Length 141
Protein Sequence MVLFNFNLLGIFPLCLVHLLGRKRIKFCLLISSPVSVPEHSVPSPQ*
Nucleotide Sequence ATGGTTTTATTTAATTTTAATCTTCTAGGGATATTCCCACTGTGTTTGGTCCATCTTTTAGGAAGAAAAAGAATAAAGTTTTGCTTACTGATTTCCTCTCCTGTTTCAGTTCCTGAACATAGCGTGCCAAGTCCACAATGA
CircID chr9:129924960|129994958
ORF Type ORF8
Protein Length 45
Nucleotide Length 135
Protein Sequence MSASIFSKYCCALSASLQSRSNRLLLDSSCFQQVSMCCCALRPS*
Nucleotide Sequence ATGTCAGCGTCCATTTTCTCAAAGTACTGCTGCGCCCTGTCCGCCTCTTTGCAATCGCGTTCAAATCGCCTTTTACTAGATTCAAGCTGCTTCCAGCAAGTCTCGATGTGCTGCTGTGCTTTACGGCCATCGTGA
CircID chr9:129924960|129994958
ORF Type ORF9
Protein Length 44
Nucleotide Length 132
Protein Sequence MLVLIQRLPQFTSRARPTTSSNTSPNGRGQQSRLLIHSPEIQP*
Nucleotide Sequence ATGTTGGTCCTTATTCAGCGTCTTCCACAGTTCACGTCTAGGGCCCGCCCGACAACAAGCTCAAATACGTCACCAAATGGCAGAGGACAGCAAAGCAGATTACTCATCCATTCTCCAGAAATTCAACCATGA
CircID chr9:129924960|129994958
ORF Type ORF10
Protein Length 38
Nucleotide Length 114
Protein Sequence MIGITCRSTSAYVFMDSPILTILLSSISCIFWKMLGM*
Nucleotide Sequence ATGATTGGGATCACCTGCCGATCAACCTCTGCATATGTCTTCATGGACTCTCCCATTCTCACAATCCTCCTTTCCTCCATCTCTTGTATTTTCTGGAAGATGTTGGGGATGTGA
CircID chr9:129924960|129994958
ORF Type ORF11
Protein Length 37
Nucleotide Length 111
Protein Sequence MSSWTLPFSQSSFPPSLVFSGRCWGCEYGNIHAAHG*
Nucleotide Sequence ATGTCTTCATGGACTCTCCCATTCTCACAATCCTCCTTTCCTCCATCTCTTGTATTTTCTGGAAGATGTTGGGGATGTGAGTATGGTAATATTCATGCTGCTCATGGTTGA
CircID chr9:129924960|129994958
ORF Type ORF12
Protein Length 37
Nucleotide Length 111
Protein Sequence MNGHNFPLDLPPNLRSGLPSPLEFERLLSDTVRFIG*
Nucleotide Sequence ATGAACGGCCATAACTTTCCTTTGGATTTGCCACCAAATTTGAGGTCTGGTTTGCCTTCTCCTCTGGAATTTGAAAGGCTGTTATCTGACACAGTGCGCTTCATTGGCTGA
CircID chr9:129924960|129994958
ORF Type ORF13
Protein Length 36
Nucleotide Length 108
Protein Sequence MQSNSGIFQRSTNLKRTRRRKKNTSIRHVKLSFPT*
Nucleotide Sequence ATGCAAAGCAACTCAGGAATCTTTCAAAGAAGTACCAACCTAAAAAGAACTCGAAGGAGGAAGAAGAATACAAGTATACGTCATGTAAAGCTTTCATTTCCAACCTGA
CircID chr9:129924960|129994958
ORF Type ORF14
Protein Length 33
Nucleotide Length 99
Protein Sequence MKALHDVYLYSSSSFEFFLGWYFFERFLSCFA*
Nucleotide Sequence ATGAAAGCTTTACATGACGTATACTTGTATTCTTCTTCCTCCTTCGAGTTCTTTTTAGGTTGGTACTTCTTTGAAAGATTCCTGAGTTGCTTTGCATAG
CircID chr9:129924960|129994958
ORF Type ORF15
Protein Length 31
Nucleotide Length 93
Protein Sequence MSNLLCCPLPFGDVFELVVGRALDVNCGRR*
Nucleotide Sequence ATGAGTAATCTGCTTTGCTGTCCTCTGCCATTTGGTGACGTATTTGAGCTTGTTGTCGGGCGGGCCCTAGACGTGAACTGTGGAAGACGCTGA
CircID chr9:129924960|129994958
ORF Type ORF16
Protein Length 58
Nucleotide Length 174
Protein Sequence LKGCYLTQCASLAECNPQIQCLQEAQTLIYKLLLPAVNHFSDQLIRLLLLFHPGTSQ*
Nucleotide Sequence TTGAAAGGCTGTTATCTGACACAGTGCGCTTCATTGGCTGAGTGTAATCCTCAAATTCAATGTCTCCAGGAGGCTCAAACCCTGATTTATAAGCTTCTATTACCAGCTGTGAATCATTTTTCTGATCAATTGATTCGGCTGCTTTTACTATTCCATCCAGGCACTTCCCAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr9:129924960|129994958 U2AF2 2 26 1
chr9:129924960|129994958 MOV10 0 0 1
chr9:129924960|129994958 FUS 0 8 2
chr9:129924960|129994958 ELAVL3 0 2 0
chr9:129924960|129994958 FAM120A 0 1 0
chr9:129924960|129994958 CELF2 0 4 3
chr9:129924960|129994958 PUM2 0 0 1
chr9:129924960|129994958 CNBP 0 0 1
chr9:129924960|129994958 YTHDF1 0 0 1
chr9:129924960|129994958 DDX42 0 2 0
chr9:129924960|129994958 UPF1 0 4 0
chr9:129924960|129994958 TAF15 0 0 1
chr9:129924960|129994958 FMR1 0 2 6
chr9:129924960|129994958 CPSF6 0 0 1
chr9:129924960|129994958 TIA1 0 1 0
chr9:129924960|129994958 ELAVL1 0 8 3
chr9:129924960|129994958 QKI 0 1 0
chr9:129924960|129994958 SRSF1 0 0 3
chr9:129924960|129994958 NOP58 0 1 7
chr9:129924960|129994958 SRSF3 0 1 0
chr9:129924960|129994958 U2AF1 0 1 0
chr9:129924960|129994958 ADAR 0 1 0
chr9:129924960|129994958 NOP56 0 1 1
chr9:129924960|129994958 HNRNPU 0 1 0
chr9:129924960|129994958 DDX54 0 4 20
chr9:129924960|129994958 HNRNPK 0 3 0
chr9:129924960|129994958 PCBP2 0 2 0
chr9:129924960|129994958 AUH 0 1 0
chr9:129924960|129994958 HNRNPL 0 5 0
chr9:129924960|129994958 PTBP1 0 14 1
chr9:129924960|129994958 HNRNPC 0 9 1
chr9:129924960|129994958 TRA2A 0 1 1
chr9:129924960|129994958 ZNF184 0 0 2
chr9:129924960|129994958 RBFOX2 0 23 0
chr9:129924960|129994958 ZC3H7B 0 0 3
chr9:129924960|129994958 MSI2 0 1 1
chr9:129924960|129994958 ACIN1 0 0 6
chr9:129924960|129994958 RBM10 0 1 0
chr9:129924960|129994958 LIN28B 0 0 6
chr9:129924960|129994958 RANGAP1 0 1 0
chr9:129924960|129994958 FXR1 0 1 1
chr9:129924960|129994958 FXR2 0 0 2
chr9:129924960|129994958 SND1 0 1 0
chr9:129924960|129994958 IGF2BP1 1 2 4
chr9:129924960|129994958 IGF2BP3 0 3 2
chr9:129924960|129994958 IGF2BP2 0 11 16
chr9:129924960|129994958 MBNL2 0 1 0
chr9:129924960|129994958 FTO 0 1 0
chr9:129924960|129994958 TARDBP 2 4 0
chr9:129924960|129994958 YTHDC1 0 2 0
chr9:129924960|129994958 BUD13 0 1 4
chr9:129924960|129994958 KHSRP 0 2 0
chr9:129924960|129994958 PRPF8 0 4 2
chr9:129924960|129994958 SLTM 0 0 1
chr9:129924960|129994958 EIF4G2 0 1 0
chr9:129924960|129994958 RBM47 0 0 3
chr9:129924960|129994958 CSTF2T 0 3 3
chr9:129924960|129994958 CSTF2 0 1 1
chr9:129924960|129994958 RBM22 0 1 0
chr9:129924960|129994958 YBX3 0 1 1
chr9:129924960|129994958 RTCB 0 1 0
chr9:129924960|129994958 AGO2 2 1 7
chr9:129924960|129994958 AGO1 0 0 2
chr9:129924960|129994958 EWSR1 0 0 2
chr9:129924960|129994958 EIF4A3 0 6 15
chr9:129924960|129994958 FBL 0 1 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab