CircRNA Information

General Information
circRNA Basic Information
CircID chr9:130139948|130140111
Strand +
CircType exon
Host Gene ENSG00000148358.18;
Algorism CIRI2;
Sequence CCCGTACATCACCATGATCGGATCCCCCACCCATTATACGTTGTATGTTTACATAAATACTCTTCAATGATCATTAGTGTTTTAAAAAAAATACTGAAAACTCCTTCTGCATCCCAATCTCTAACCAGGAAAGCAAATGCTATTTACAGACCTGCAAGCCCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:130139948|130140111 hsa-miR-30a-5p 0 0 1
chr9:130139948|130140111 hsa-miR-30a-3p 0 0 1
chr9:130139948|130140111 hsa-miR-30d-5p 0 0 1
chr9:130139948|130140111 hsa-miR-30d-3p 0 0 1
chr9:130139948|130140111 hsa-miR-30b-5p 0 0 1
chr9:130139948|130140111 hsa-miR-30b-3p 0 0 1
chr9:130139948|130140111 hsa-miR-30e-5p 0 0 1
chr9:130139948|130140111 hsa-miR-30e-3p 0 0 1
chr9:130139948|130140111 hsa-miR-380-5p 0 0 1
chr9:130139948|130140111 hsa-miR-380-3p 0 0 1
chr9:130139948|130140111 hsa-miR-496 0 0 1
chr9:130139948|130140111 hsa-miR-625-5p 0 0 1
chr9:130139948|130140111 hsa-miR-625-3p 0 0 1
chr9:130139948|130140111 hsa-miR-657 0 0 1
chr9:130139948|130140111 hsa-miR-298 0 0 1
chr9:130139948|130140111 hsa-miR-1179 0 0 1
chr9:130139948|130140111 hsa-miR-1293 0 0 1
chr9:130139948|130140111 hsa-miR-1303 1 0 1
chr9:130139948|130140111 hsa-miR-1275 0 0 1
chr9:130139948|130140111 hsa-miR-769-3p 0 0 1
chr9:130139948|130140111 hsa-miR-450b-3p 0 0 1
chr9:130139948|130140111 hsa-miR-30c 0 0 1
chr9:130139948|130140111 hsa-miR-638 1 0 0
chr9:130139948|130140111 hsa-miR-3132 1 0 0
chr9:130139948|130140111 hsa-miR-4425 1 1 0
chr9:130139948|130140111 hsa-miR-4450 1 0 0
chr9:130139948|130140111 hsa-miR-4454 0 1 0
chr9:130139948|130140111 hsa-miR-4458 1 0 0
chr9:130139948|130140111 hsa-miR-4490 1 0 0
chr9:130139948|130140111 hsa-miR-4498 1 0 0
chr9:130139948|130140111 hsa-miR-4506 0 1 0
chr9:130139948|130140111 hsa-miR-4525 1 1 0
chr9:130139948|130140111 hsa-miR-4651 1 0 0
chr9:130139948|130140111 hsa-miR-4689 1 0 0
chr9:130139948|130140111 hsa-miR-4721 1 1 0
chr9:130139948|130140111 hsa-miR-5572 1 1 0
chr9:130139948|130140111 hsa-miR-5698 1 0 0
chr9:130139948|130140111 hsa-miR-6086 1 0 0
chr9:130139948|130140111 hsa-miR-6745 1 0 0
chr9:130139948|130140111 hsa-miR-12128 1 0 0
chr9:130139948|130140111 hsa-miR-92a-2-5p 0 1 0
chr9:130139948|130140111 hsa-miR-125b-1-3p 1 0 0
chr9:130139948|130140111 hsa-miR-6728-5p 0 1 0
chr9:130139948|130140111 hsa-miR-6804-5p 1 0 0
chr9:130139948|130140111 hsa-miR-197-5p 1 0 0
chr9:130139948|130140111 hsa-miR-8069 1 0 0
chr9:130139948|130140111 hsa-miR-6716-5p 1 0 0
chr9:130139948|130140111 hsa-miR-6748-5p 1 0 0
chr9:130139948|130140111 hsa-miR-6782-5p 1 0 0
chr9:130139948|130140111 hsa-miR-6786-5p 1 0 0
chr9:130139948|130140111 hsa-miR-5088-5p 1 0 0
chr9:130139948|130140111 hsa-miR-1226-5p 0 1 0
chr9:130139948|130140111 hsa-miR-6740-5p 1 0 0
chr9:130139948|130140111 hsa-miR-4764-5p 0 1 0
chr9:130139948|130140111 hsa-miR-1228-5p 1 0 0
chr9:130139948|130140111 hsa-miR-4713-3p 1 1 0
chr9:130139948|130140111 hsa-miR-3162-5p 1 0 0
chr9:130139948|130140111 hsa-miR-6802-5p 1 0 0
chr9:130139948|130140111 hsa-miR-616-3p 1 0 0
chr9:130139948|130140111 hsa-miR-3158-3p 0 1 0
chr9:130139948|130140111 hsa-miR-6801-5p 1 0 0
chr9:130139948|130140111 hsa-miR-6812-5p 1 0 0
chr9:130139948|130140111 hsa-miR-6870-5p 1 0 0
chr9:130139948|130140111 hsa-miR-6756-5p 1 1 0
chr9:130139948|130140111 hsa-miR-6751-5p 1 0 0
chr9:130139948|130140111 hsa-miR-328-5p 1 0 0
chr9:130139948|130140111 hsa-miR-6846-5p 1 0 0
chr9:130139948|130140111 hsa-miR-6848-5p 1 0 0
chr9:130139948|130140111 hsa-miR-6736-5p 1 0 0
chr9:130139948|130140111 hsa-miR-6766-5p 1 1 0
chr9:130139948|130140111 hsa-miR-7107-3p 0 1 0
chr9:130139948|130140111 hsa-miR-6811-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr9:130139948|130140111
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MIISVLKKILKTPSASQSLTRKANAIYRPASP
Nucleotide Sequence ATGATCATTAGTGTTTTAAAAAAAATACTGAAAACTCCTTCTGCATCCCAATCTCTAACCAGGAAAGCAAATGCTATTTACAGACCTGCAAGCCCT
CircID chr9:130139948|130140111
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MVRDWDAEGVFSIFFKTLMIIEEYLCKHTTYNGWGIRSW
Nucleotide Sequence CTGGTTAGAGATTGGGATGCAGAAGGAGTTTTCAGTATTTTTTTTAAAACACTAATGATCATTGAAGAGTATTTATGTAAACATACAACGTATAATGGGTGGGGGATCCGATCATGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab