CircRNA Information

General Information
circRNA Basic Information
CircID chr9:130885823|130886010
Strand +
CircType exon
Host Gene ENSG00000097007.16;
Algorism CIRI2;
Sequence CTGGCCTGGAGAGCTCAGTCTGGGGCACTAGGTGGGAGCGGGGCTGGCGGGTCCTGGCATGCCGACTGCAGTCCACGGAGCAGGAACTCCACAGATAAAATTCGAGGACAGAGACGGAGCGGGGAGGAGGAAGGTGCGGGAGGGCAGGCGGTGCAAACGTAGGTAGTAGAGCTGGACTCCACAGGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:130885823|130886010 hsa-miR-370-5p 0 0 1
chr9:130885823|130886010 hsa-miR-370-3p 0 0 1
chr9:130885823|130886010 hsa-miR-519e-5p 0 0 1
chr9:130885823|130886010 hsa-miR-519e-3p 0 0 1
chr9:130885823|130886010 hsa-miR-507 0 0 1
chr9:130885823|130886010 hsa-miR-557 0 0 1
chr9:130885823|130886010 hsa-miR-593-5p 0 0 1
chr9:130885823|130886010 hsa-miR-593-3p 0 0 1
chr9:130885823|130886010 hsa-miR-766-5p 0 0 1
chr9:130885823|130886010 hsa-miR-766-3p 0 0 1
chr9:130885823|130886010 hsa-miR-1291 0 0 1
chr9:130885823|130886010 hsa-miR-1282 0 0 1
chr9:130885823|130886010 hsa-miR-1288-5p 0 0 1
chr9:130885823|130886010 hsa-miR-1288-3p 0 0 1
chr9:130885823|130886010 hsa-miR-532-3p 0 0 1
chr9:130885823|130886010 hsa-miR-146b-3p 0 0 1
chr9:130885823|130886010 hsa-miR-1289 0 0 1
chr9:130885823|130886010 hsa-miR-1224-3p 0 0 1
chr9:130885823|130886010 hsa-miR-515-3p 0 0 1
chr9:130885823|130886010 hsa-miR-509-3-5p 0 0 1
chr9:130885823|130886010 hsa-miR-509-5p 0 0 1
chr9:130885823|130886010 hsa-miR-590-3p 0 0 1
chr9:130885823|130886010 hsa-miR-1260 0 0 1
chr9:130885823|130886010 hsa-miR-1280 0 0 1
chr9:130885823|130886010 hsa-miR-1269 0 0 1
chr9:130885823|130886010 hsa-miR-371-3p 0 0 1
chr9:130885823|130886010 hsa-miR-346 1 0 0
chr9:130885823|130886010 hsa-miR-596 1 0 0
chr9:130885823|130886010 hsa-miR-1976 1 0 0
chr9:130885823|130886010 hsa-miR-718 1 0 0
chr9:130885823|130886010 hsa-miR-4279 1 0 0
chr9:130885823|130886010 hsa-miR-4290 1 0 0
chr9:130885823|130886010 hsa-miR-3972 1 0 0
chr9:130885823|130886010 hsa-miR-4785 1 0 0
chr9:130885823|130886010 hsa-miR-6749-3p 1 0 0
chr9:130885823|130886010 hsa-miR-18a-3p 1 0 0
chr9:130885823|130886010 hsa-miR-3194-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6747-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6836-3p 1 0 0
chr9:130885823|130886010 hsa-miR-149-5p 1 0 0
chr9:130885823|130886010 hsa-miR-6822-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6875-3p 1 0 0
chr9:130885823|130886010 hsa-miR-3189-5p 1 0 0
chr9:130885823|130886010 hsa-miR-7110-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6845-3p 1 0 0
chr9:130885823|130886010 hsa-miR-423-3p 1 0 0
chr9:130885823|130886010 hsa-miR-877-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6728-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6858-3p 1 0 0
chr9:130885823|130886010 hsa-miR-4436b-5p 1 0 0
chr9:130885823|130886010 hsa-miR-4763-5p 1 0 0
chr9:130885823|130886010 hsa-miR-1247-5p 1 0 0
chr9:130885823|130886010 hsa-miR-6894-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6803-3p 1 0 0
chr9:130885823|130886010 hsa-miR-5001-3p 1 0 0
chr9:130885823|130886010 hsa-miR-7113-3p 1 0 0
chr9:130885823|130886010 hsa-miR-3667-3p 1 0 0
chr9:130885823|130886010 hsa-miR-1306-5p 1 0 0
chr9:130885823|130886010 hsa-miR-6769a-3p 1 0 0
chr9:130885823|130886010 hsa-miR-339-5p 1 0 0
chr9:130885823|130886010 hsa-miR-6870-3p 1 0 0
chr9:130885823|130886010 hsa-miR-1236-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6811-3p 1 0 0
chr9:130885823|130886010 hsa-miR-1226-3p 1 0 0
chr9:130885823|130886010 hsa-miR-7106-3p 1 0 0
chr9:130885823|130886010 hsa-miR-4687-5p 1 0 0
chr9:130885823|130886010 hsa-miR-6804-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6752-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6782-3p 1 0 0
chr9:130885823|130886010 hsa-miR-3605-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6826-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6886-3p 1 0 0
chr9:130885823|130886010 hsa-miR-5088-3p 1 0 0
chr9:130885823|130886010 hsa-miR-328-3p 1 0 0
chr9:130885823|130886010 hsa-miR-937-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6760-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6880-3p 1 0 0
chr9:130885823|130886010 hsa-miR-3124-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6734-3p 1 0 0
chr9:130885823|130886010 hsa-miR-1249-3p 1 0 0
chr9:130885823|130886010 hsa-miR-642a-5p 1 0 0
chr9:130885823|130886010 hsa-miR-4787-3p 1 0 0
chr9:130885823|130886010 hsa-miR-320a-5p 1 0 0
chr9:130885823|130886010 hsa-miR-6754-3p 1 0 0
chr9:130885823|130886010 hsa-miR-10396a-3p 1 0 0
chr9:130885823|130886010 hsa-miR-2682-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6753-3p 1 0 0
chr9:130885823|130886010 hsa-miR-4722-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6727-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6756-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6792-3p 1 0 0
chr9:130885823|130886010 hsa-miR-10401-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6805-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6810-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6829-3p 1 0 0
chr9:130885823|130886010 hsa-miR-10392-3p 1 0 0
chr9:130885823|130886010 hsa-miR-6891-3p 1 0 0
chr9:130885823|130886010 hsa-miR-4691-5p 1 0 0
chr9:130885823|130886010 hsa-miR-6827-3p 1 0 0
chr9:130885823|130886010 hsa-miR-4769-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:130885823|130886010
ORF Type ORF1
Protein Length 53
Nucleotide Length 162
Protein Sequence LAWRAQSGALGGSGAGGSWHADCSPRSRNSTDKIRGQRRSGEEEGAGGQAVQT
Nucleotide Sequence CTGGCCTGGAGAGCTCAGTCTGGGGCACTAGGTGGGAGCGGGGCTGGCGGGTCCTGGCATGCCGACTGCAGTCCACGGAGCAGGAACTCCACAGATAAAATTCGAGGACAGAGACGGAGCGGGGAGGAGGAAGGTGCGGGAGGGCAGGCGGTGCAAACGTAG
CircID chr9:130885823|130886010
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MAGPGMPTAVHGAGTPQIKFEDRDGAGRRKVREGRRCKRR
Nucleotide Sequence CTGGCGGGTCCTGGCATGCCGACTGCAGTCCACGGAGCAGGAACTCCACAGATAAAATTCGAGGACAGAGACGGAGCGGGGAGGAGGAAGGTGCGGGAGGGCAGGCGGTGCAAACGTAGGTAG
CircID chr9:130885823|130886010
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MESSVWGTRWERGWRVLACRLQSTEQELHR
Nucleotide Sequence CTGGAGAGCTCAGTCTGGGGCACTAGGTGGGAGCGGGGCTGGCGGGTCCTGGCATGCCGACTGCAGTCCACGGAGCAGGAACTCCACAGATAA
CircID chr9:130885823|130886010
ORF Type ORF4
Protein Length 61
Nucleotide Length 183
Protein Sequence MWSPALLPTFAPPALPHLPPPRSVSVLEFYLWSSCSVDCSRHARTRQPRSHLVPQTELSRP
Nucleotide Sequence CTGTGGAGTCCAGCTCTACTACCTACGTTTGCACCGCCTGCCCTCCCGCACCTTCCTCCTCCCCGCTCCGTCTCTGTCCTCGAATTTTATCTGTGGAGTTCCTGCTCCGTGGACTGCAGTCGGCATGCCAGGACCCGCCAGCCCCGCTCCCACCTAGTGCCCCAGACTGAGCTCTCCAGGCCA
CircID chr9:130885823|130886010
ORF Type ORF5
Protein Length 42
Nucleotide Length 129
Protein Sequence MHRLPSRTFLLPAPSLSSNFICGVPAPWTAVGMPGPASPAPT
Nucleotide Sequence TTGCACCGCCTGCCCTCCCGCACCTTCCTCCTCCCCGCTCCGTCTCTGTCCTCGAATTTTATCTGTGGAGTTCCTGCTCCGTGGACTGCAGTCGGCATGCCAGGACCCGCCAGCCCCGCTCCCACCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab