CircRNA Information

General Information
circRNA Basic Information
CircID chr9:131482533|131482844
Strand +
CircType exon
Host Gene ENSG00000130723.16;
Algorism CIRI2;
Sequence CCCGTTAACAGGCGGGACGACAGCCCCTTGCAGCCGCTCGGCCCCCTCCGAGCCCTTTCTGTTTTTCAGAGAACGCTCGTTGCCGATGGGTCCTGGTCTGTGCTCCTTGCTCTGTCCAGAGCCTTGTTCTGAATCCTTGATAAAAAAGCAGAGAGGTGGAGACACACAGACTGGAATGACCACACTCTCTAGCTTCTACTGTCCCAGGAATTGAGGAAGATGATGAGACGATGGCCCCTTCCACCCAGGCCCTGGCCACTGTGACTGGAACGTCCAGGTTACCTTCTGCTCAGATGGCTTTGGAGCCTGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:131482533|131482844 hsa-miR-27a-5p 0 0 1
chr9:131482533|131482844 hsa-miR-27a-3p 0 0 1
chr9:131482533|131482844 hsa-miR-27b-5p 0 0 1
chr9:131482533|131482844 hsa-miR-27b-3p 0 0 1
chr9:131482533|131482844 hsa-miR-422a 0 0 1
chr9:131482533|131482844 hsa-miR-484 0 0 1
chr9:131482533|131482844 hsa-miR-619-5p 0 0 1
chr9:131482533|131482844 hsa-miR-619-3p 0 0 1
chr9:131482533|131482844 hsa-miR-622 0 0 1
chr9:131482533|131482844 hsa-miR-649 0 0 1
chr9:131482533|131482844 hsa-miR-661 0 0 1
chr9:131482533|131482844 hsa-miR-298 0 1 1
chr9:131482533|131482844 hsa-miR-891a-5p 0 0 1
chr9:131482533|131482844 hsa-miR-891a-3p 0 0 1
chr9:131482533|131482844 hsa-miR-760 0 0 1
chr9:131482533|131482844 hsa-miR-936 0 1 1
chr9:131482533|131482844 hsa-miR-1293 0 0 1
chr9:131482533|131482844 hsa-miR-145-5p 0 0 1
chr9:131482533|131482844 hsa-miR-574-5p 0 1 1
chr9:131482533|131482844 hsa-miR-490-3p 0 1 1
chr9:131482533|131482844 hsa-miR-1302 0 0 1
chr9:131482533|131482844 hsa-miR-128 0 0 1
chr9:131482533|131482844 hsa-miR-378 0 0 1
chr9:131482533|131482844 hsa-miR-762 1 0 0
chr9:131482533|131482844 hsa-miR-1538 1 0 0
chr9:131482533|131482844 hsa-miR-711 0 1 0
chr9:131482533|131482844 hsa-miR-2861 1 1 0
chr9:131482533|131482844 hsa-miR-3132 0 1 0
chr9:131482533|131482844 hsa-miR-4298 0 1 0
chr9:131482533|131482844 hsa-miR-4270 1 0 0
chr9:131482533|131482844 hsa-miR-3937 1 0 0
chr9:131482533|131482844 hsa-miR-1268b 1 0 0
chr9:131482533|131482844 hsa-miR-4468 0 1 0
chr9:131482533|131482844 hsa-miR-4508 1 0 0
chr9:131482533|131482844 hsa-miR-4656 1 0 0
chr9:131482533|131482844 hsa-miR-4674 1 0 0
chr9:131482533|131482844 hsa-miR-6745 0 1 0
chr9:131482533|131482844 hsa-miR-9899 1 0 0
chr9:131482533|131482844 hsa-miR-9985 0 1 0
chr9:131482533|131482844 hsa-miR-12122 0 1 0
chr9:131482533|131482844 hsa-miR-12128 1 0 0
chr9:131482533|131482844 hsa-miR-128-1-5p 1 1 0
chr9:131482533|131482844 hsa-miR-1972 0 1 0
chr9:131482533|131482844 hsa-miR-6089 1 0 0
chr9:131482533|131482844 hsa-miR-4722-5p 1 0 0
chr9:131482533|131482844 hsa-miR-3677-5p 0 1 0
chr9:131482533|131482844 hsa-miR-6776-5p 0 1 0
chr9:131482533|131482844 hsa-miR-6873-3p 0 1 0
chr9:131482533|131482844 hsa-miR-185-3p 0 1 0
chr9:131482533|131482844 hsa-miR-6829-5p 1 0 0
chr9:131482533|131482844 hsa-miR-6732-5p 1 0 0
chr9:131482533|131482844 hsa-miR-6798-5p 0 1 0
chr9:131482533|131482844 hsa-miR-5006-5p 1 0 0
chr9:131482533|131482844 hsa-miR-6786-5p 1 0 0
chr9:131482533|131482844 hsa-miR-6835-5p 1 0 0
chr9:131482533|131482844 hsa-miR-5088-5p 0 1 0
chr9:131482533|131482844 hsa-miR-4693-3p 0 1 0
chr9:131482533|131482844 hsa-miR-1229-5p 1 0 0
chr9:131482533|131482844 hsa-miR-6784-5p 1 0 0
chr9:131482533|131482844 hsa-miR-3127-5p 0 1 0
chr9:131482533|131482844 hsa-miR-6749-5p 1 0 0
chr9:131482533|131482844 hsa-miR-4787-5p 1 0 0
chr9:131482533|131482844 hsa-miR-3690 0 1 0
chr9:131482533|131482844 hsa-miR-6781-5p 1 0 0
chr9:131482533|131482844 hsa-miR-6877-5p 0 1 0
chr9:131482533|131482844 hsa-miR-4664-3p 0 1 0
chr9:131482533|131482844 hsa-miR-216a-3p 0 1 0
chr9:131482533|131482844 hsa-miR-6767-5p 0 1 0
chr9:131482533|131482844 hsa-miR-518c-5p 0 1 0
chr9:131482533|131482844 hsa-miR-4520-3p 0 1 0
chr9:131482533|131482844 hsa-miR-1207-5p 1 0 0
chr9:131482533|131482844 hsa-miR-4763-3p 1 0 0
chr9:131482533|131482844 hsa-miR-6787-5p 1 0 0
chr9:131482533|131482844 hsa-miR-6775-5p 1 0 0
chr9:131482533|131482844 hsa-miR-6743-5p 1 0 0
chr9:131482533|131482844 hsa-miR-6756-5p 1 0 0
chr9:131482533|131482844 hsa-miR-6813-5p 1 1 0
chr9:131482533|131482844 hsa-miR-7107-5p 1 0 0
chr9:131482533|131482844 hsa-miR-6779-5p 1 0 0
chr9:131482533|131482844 hsa-miR-4728-5p 1 0 0
chr9:131482533|131482844 hsa-miR-5189-5p 0 1 0
chr9:131482533|131482844 hsa-miR-328-5p 1 0 0
chr9:131482533|131482844 hsa-miR-4685-5p 1 1 0
chr9:131482533|131482844 hsa-miR-6795-5p 1 0 0
chr9:131482533|131482844 hsa-miR-6848-5p 1 0 0
chr9:131482533|131482844 hsa-miR-3187-5p 0 1 0
chr9:131482533|131482844 hsa-miR-6885-5p 1 0 0
chr9:131482533|131482844 hsa-miR-4646-5p 1 0 0
chr9:131482533|131482844 hsa-miR-7107-3p 0 1 0
chr9:131482533|131482844 hsa-miR-6837-5p 0 1 0
chr9:131482533|131482844 hsa-miR-128-2-5p 0 1 0
chr9:131482533|131482844 hsa-miR-487a-5p 0 1 0
chr9:131482533|131482844 hsa-miR-4704-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:131482533|131482844
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MQPLGPLRALSVFQRTLVADGSWSVLLALSRALF
Nucleotide Sequence TTGCAGCCGCTCGGCCCCCTCCGAGCCCTTTCTGTTTTTCAGAGAACGCTCGTTGCCGATGGGTCCTGGTCTGTGCTCCTTGCTCTGTCCAGAGCCTTGTTCTGA
CircID chr9:131482533|131482844
ORF Type ORF2
Protein Length 51
Nucleotide Length 156
Protein Sequence MFFRERSLPMGPGLCSLLCPEPCSESLIKKQRGGDTQTGMTTLSSFYCPRN
Nucleotide Sequence CTGTTTTTCAGAGAACGCTCGTTGCCGATGGGTCCTGGTCTGTGCTCCTTGCTCTGTCCAGAGCCTTGTTCTGAATCCTTGATAAAAAAGCAGAGAGGTGGAGACACACAGACTGGAATGACCACACTCTCTAGCTTCTACTGTCCCAGGAATTGA
CircID chr9:131482533|131482844
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MAPSTQALATVTGTSRLPSAQMALEPA
Nucleotide Sequence ATGGCCCCTTCCACCCAGGCCCTGGCCACTGTGACTGGAACGTCCAGGTTACCTTCTGCTCAGATGGCTTTGGAGCCTGCT
CircID chr9:131482533|131482844
ORF Type ORF4
Protein Length 90
Nucleotide Length 273
Protein Sequence MDVPVTVARAWVEGAIVSSSSSIPGTVEARECGHSSLCVSTSLLFYQGFRTRLWTEQGAQTRTHRQRAFSEKQKGLGGGRAAARGCRPAC
Nucleotide Sequence CTGGACGTTCCAGTCACAGTGGCCAGGGCCTGGGTGGAAGGGGCCATCGTCTCATCATCTTCCTCAATTCCTGGGACAGTAGAAGCTAGAGAGTGTGGTCATTCCAGTCTGTGTGTCTCCACCTCTCTGCTTTTTTATCAAGGATTCAGAACAAGGCTCTGGACAGAGCAAGGAGCACAGACCAGGACCCATCGGCAACGAGCGTTCTCTGAAAAACAGAAAGGGCTCGGAGGGGGCCGAGCGGCTGCAAGGGGCTGTCGTCCCGCCTGTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab