CircRNA Information

General Information
circRNA Basic Information
CircID chr9:131498732|131498970
Strand +
CircType exon
Host Gene ENSG00000130723.16;
Algorism CIRI2;
Sequence GCTGTGGGGAGAAGCCAACAGTTAAGAAAACCAAACCAAATGCAGCTGGCATTGAAGTCCCCAGTGGGTAGATGGGCATCTGAGATGTATACCCACACTCTGGACTTCATCCCACTCTAGTGGATGGTGGACAATACCGCAAGGCCACTGGTGGCTGAGCAACGAGCCGCATCCCCAGTGACCAAGGCAGAGCTGCCAGCGTCAGGAGGGCAACTTTAACAGGCAAAAGTGAGTGGGTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:131498732|131498970 hsa-miR-198 0 0 1
chr9:131498732|131498970 hsa-miR-561-5p 0 0 1
chr9:131498732|131498970 hsa-miR-561-3p 0 0 1
chr9:131498732|131498970 hsa-miR-659-5p 0 0 1
chr9:131498732|131498970 hsa-miR-659-3p 0 0 1
chr9:131498732|131498970 hsa-miR-874-5p 0 0 1
chr9:131498732|131498970 hsa-miR-874-3p 0 0 1
chr9:131498732|131498970 hsa-miR-1178-5p 0 0 1
chr9:131498732|131498970 hsa-miR-1178-3p 0 0 1
chr9:131498732|131498970 hsa-miR-1202 1 0 1
chr9:131498732|131498970 hsa-miR-885-3p 0 0 1
chr9:131498732|131498970 hsa-miR-574-5p 0 0 1
chr9:131498732|131498970 hsa-miR-525-5p 0 0 1
chr9:131498732|131498970 hsa-miR-520a-5p 0 0 1
chr9:131498732|131498970 hsa-miR-661 1 0 0
chr9:131498732|131498970 hsa-miR-760 1 0 0
chr9:131498732|131498970 hsa-miR-3937 1 0 0
chr9:131498732|131498970 hsa-miR-4660 1 0 0
chr9:131498732|131498970 hsa-miR-9901 1 0 0
chr9:131498732|131498970 hsa-miR-3194-3p 1 0 0
chr9:131498732|131498970 hsa-miR-191-3p 1 0 0
chr9:131498732|131498970 hsa-miR-6787-3p 1 0 0
chr9:131498732|131498970 hsa-miR-383-3p 1 0 0
chr9:131498732|131498970 hsa-miR-6770-3p 1 0 0
chr9:131498732|131498970 hsa-miR-1227-3p 1 0 0
chr9:131498732|131498970 hsa-miR-6752-5p 1 0 0
chr9:131498732|131498970 hsa-miR-6756-5p 1 0 0
chr9:131498732|131498970 hsa-miR-6803-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:131498732|131498970
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MQLALKSPVGRWASEMYTHTLDFIPL
Nucleotide Sequence ATGCAGCTGGCATTGAAGTCCCCAGTGGGTAGATGGGCATCTGAGATGTATACCCACACTCTGGACTTCATCCCACTCTAG
CircID chr9:131498732|131498970
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MVDNTARPLVAEQRAASPVTKAELPASGGQL
Nucleotide Sequence ATGGTGGACAATACCGCAAGGCCACTGGTGGCTGAGCAACGAGCCGCATCCCCAGTGACCAAGGCAGAGCTGCCAGCGTCAGGAGGGCAACTTTAA
CircID chr9:131498732|131498970
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MRCIPTLWTSSHSSGWWTIPQGHWWLSNEPHPQ
Nucleotide Sequence CTGAGATGTATACCCACACTCTGGACTTCATCCCACTCTAGTGGATGGTGGACAATACCGCAAGGCCACTGGTGGCTGAGCAACGAGCCGCATCCCCAGTGA
CircID chr9:131498732|131498970
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MKSRVWVYISDAHLPTGDFNASCIWFGFLNCWLLPT
Nucleotide Sequence ATGAAGTCCAGAGTGTGGGTATACATCTCAGATGCCCATCTACCCACTGGGGACTTCAATGCCAGCTGCATTTGGTTTGGTTTTCTTAACTGTTGGCTTCTCCCCACA
CircID chr9:131498732|131498970
ORF Type ORF5
Protein Length 39
Nucleotide Length 120
Protein Sequence MPVKVALLTLAALPWSLGMRLVAQPPVALRYCPPSTRVG
Nucleotide Sequence TTGCCTGTTAAAGTTGCCCTCCTGACGCTGGCAGCTCTGCCTTGGTCACTGGGGATGCGGCTCGTTGCTCAGCCACCAGTGGCCTTGCGGTATTGTCCACCATCCACTAGAGTGGGATGA
CircID chr9:131498732|131498970
ORF Type ORF6
Protein Length 26
Nucleotide Length 78
Protein Sequence MPIYPLGTSMPAAFGLVFLTVGFSPQ
Nucleotide Sequence ATGCCCATCTACCCACTGGGGACTTCAATGCCAGCTGCATTTGGTTTGGTTTTCTTAACTGTTGGCTTCTCCCCACAG
CircID chr9:131498732|131498970
ORF Type ORF7
Protein Length 46
Nucleotide Length 141
Protein Sequence MLSHQWPCGIVHHPLEWDEVQSVGIHLRCPSTHWGLQCQLHLVWFS
Nucleotide Sequence TTGCTCAGCCACCAGTGGCCTTGCGGTATTGTCCACCATCCACTAGAGTGGGATGAAGTCCAGAGTGTGGGTATACATCTCAGATGCCCATCTACCCACTGGGGACTTCAATGCCAGCTGCATTTGGTTTGGTTTTCTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab