CircRNA Information

General Information
circRNA Basic Information
CircID chr9:133153817|133154026
Strand -
CircType exon
Host Gene ENSG00000148288.10;
Algorism CIRI2;
Sequence CTGCCCCCCGAAGACTGCCCCACCATAATAGAAGTCCCCTTCGCTGTCTGCCACAAAGGCAGTGGAAACACGCCTGCGCTCATAGGGGAACTGCTGGCGGGGAACGGCGTAGTAGCTTGGGTGAATGGCAGCCACCAGGTCTCCCAAGGTCTCAGGGCCCCACGGGTTCCGAAACACCATGTCCACATCAAGGCAGAAGAGGTAGTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:133153817|133154026 hsa-miR-584-5p 0 0 1
chr9:133153817|133154026 hsa-miR-584-3p 0 0 1
chr9:133153817|133154026 hsa-miR-604 0 0 1
chr9:133153817|133154026 hsa-miR-631 0 0 1
chr9:133153817|133154026 hsa-miR-647 0 1 1
chr9:133153817|133154026 hsa-miR-541-5p 0 0 1
chr9:133153817|133154026 hsa-miR-541-3p 0 0 1
chr9:133153817|133154026 hsa-miR-1291 0 1 1
chr9:133153817|133154026 hsa-miR-1324 0 0 1
chr9:133153817|133154026 hsa-miR-769-5p 0 1 1
chr9:133153817|133154026 hsa-miR-486-3p 0 0 1
chr9:133153817|133154026 hsa-miR-654-5p 0 0 1
chr9:133153817|133154026 hsa-miR-339-3p 0 0 1
chr9:133153817|133154026 hsa-miR-556-5p 0 0 1
chr9:133153817|133154026 hsa-miR-125a-5p 0 1 1
chr9:133153817|133154026 hsa-miR-125b 0 0 1
chr9:133153817|133154026 hsa-miR-663a 1 0 0
chr9:133153817|133154026 hsa-miR-760 0 1 0
chr9:133153817|133154026 hsa-miR-3138 0 1 0
chr9:133153817|133154026 hsa-miR-3147 1 0 0
chr9:133153817|133154026 hsa-miR-3154 1 0 0
chr9:133153817|133154026 hsa-miR-4298 1 0 0
chr9:133153817|133154026 hsa-miR-4322 1 0 0
chr9:133153817|133154026 hsa-miR-4324 0 1 0
chr9:133153817|133154026 hsa-miR-4440 1 0 0
chr9:133153817|133154026 hsa-miR-4456 0 1 0
chr9:133153817|133154026 hsa-miR-4488 1 0 0
chr9:133153817|133154026 hsa-miR-4491 1 1 0
chr9:133153817|133154026 hsa-miR-4651 1 0 0
chr9:133153817|133154026 hsa-miR-4657 1 1 0
chr9:133153817|133154026 hsa-miR-4688 1 0 0
chr9:133153817|133154026 hsa-miR-5090 1 0 0
chr9:133153817|133154026 hsa-miR-5705 1 1 0
chr9:133153817|133154026 hsa-miR-6090 1 0 0
chr9:133153817|133154026 hsa-miR-7976 0 1 0
chr9:133153817|133154026 hsa-miR-92a-2-5p 1 0 0
chr9:133153817|133154026 hsa-miR-6765-5p 1 0 0
chr9:133153817|133154026 hsa-miR-1227-5p 1 0 0
chr9:133153817|133154026 hsa-miR-6890-5p 1 0 0
chr9:133153817|133154026 hsa-miR-1288-3p 1 0 0
chr9:133153817|133154026 hsa-miR-6742-5p 1 0 0
chr9:133153817|133154026 hsa-miR-3151-5p 1 1 0
chr9:133153817|133154026 hsa-miR-877-3p 0 1 0
chr9:133153817|133154026 hsa-miR-6798-5p 1 0 0
chr9:133153817|133154026 hsa-miR-6786-5p 1 0 0
chr9:133153817|133154026 hsa-miR-3189-3p 0 1 0
chr9:133153817|133154026 hsa-miR-887-5p 0 1 0
chr9:133153817|133154026 hsa-miR-423-5p 1 0 0
chr9:133153817|133154026 hsa-miR-3619-3p 1 0 0
chr9:133153817|133154026 hsa-miR-532-5p 1 0 0
chr9:133153817|133154026 hsa-miR-1296-3p 1 0 0
chr9:133153817|133154026 hsa-miR-6890-3p 0 1 0
chr9:133153817|133154026 hsa-miR-6509-3p 0 1 0
chr9:133153817|133154026 hsa-miR-5002-3p 1 0 0
chr9:133153817|133154026 hsa-miR-4482-3p 0 1 0
chr9:133153817|133154026 hsa-miR-6769b-5p 1 0 0
chr9:133153817|133154026 hsa-miR-6743-5p 1 0 0
chr9:133153817|133154026 hsa-miR-6756-5p 1 0 0
chr9:133153817|133154026 hsa-miR-6769a-5p 1 0 0
chr9:133153817|133154026 hsa-miR-6851-5p 1 0 0
chr9:133153817|133154026 hsa-miR-3127-3p 1 0 0
chr9:133153817|133154026 hsa-miR-5196-5p 1 0 0
chr9:133153817|133154026 hsa-miR-10396b-5p 1 0 0
chr9:133153817|133154026 hsa-miR-1237-5p 1 0 0
chr9:133153817|133154026 hsa-miR-328-5p 1 1 0
chr9:133153817|133154026 hsa-miR-6738-5p 1 0 0
chr9:133153817|133154026 hsa-miR-6794-5p 1 0 0
chr9:133153817|133154026 hsa-miR-6846-5p 1 0 0
chr9:133153817|133154026 hsa-miR-365a-5p 1 0 0
chr9:133153817|133154026 hsa-miR-365b-5p 1 0 0
chr9:133153817|133154026 hsa-miR-6511b-5p 1 0 0
chr9:133153817|133154026 hsa-miR-4722-3p 1 1 0
chr9:133153817|133154026 hsa-miR-4769-3p 0 1 0
chr9:133153817|133154026 hsa-miR-125b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:133153817|133154026
ORF Type ORF1
Protein Length 70
Nucleotide Length 210
Protein Sequence LPPEDCPTIIEVPFAVCHKGSGNTPALIGELLAGNGVVAWVNGSHQVSQGLRAPRVPKHHVHIKAEEVVH
Nucleotide Sequence CTGCCCCCCGAAGACTGCCCCACCATAATAGAAGTCCCCTTCGCTGTCTGCCACAAAGGCAGTGGAAACACGCCTGCGCTCATAGGGGAACTGCTGGCGGGGAACGGCGTAGTAGCTTGGGTGAATGGCAGCCACCAGGTCTCCCAAGGTCTCAGGGCCCCACGGGTTCCGAAACACCATGTCCACATCAAGGCAGAAGAGGTAGTCCAC
CircID chr9:133153817|133154026
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MAATRSPKVSGPHGFRNTMSTSRQKR
Nucleotide Sequence ATGGCAGCCACCAGGTCTCCCAAGGTCTCAGGGCCCCACGGGTTCCGAAACACCATGTCCACATCAAGGCAGAAGAGGTAG
CircID chr9:133153817|133154026
ORF Type ORF3
Protein Length 65
Nucleotide Length 195
Protein Sequence MPHHNRSPLRCLPQRQWKHACAHRGTAGGERRSSLGEWQPPGLPRSQGPTGSETPCPHQGRRGSP
Nucleotide Sequence CTGCCCCACCATAATAGAAGTCCCCTTCGCTGTCTGCCACAAAGGCAGTGGAAACACGCCTGCGCTCATAGGGGAACTGCTGGCGGGGAACGGCGTAGTAGCTTGGGTGAATGGCAGCCACCAGGTCTCCCAAGGTCTCAGGGCCCCACGGGTTCCGAAACACCATGTCCACATCAAGGCAGAAGAGGTAGTCCA
CircID chr9:133153817|133154026
ORF Type ORF4
Protein Length 60
Nucleotide Length 180
Protein Sequence MVFRNPWGPETLGDLVAAIHPSYYAVPRQQFPYERRRVSTAFVADSEGDFYYGGAVFGGQ
Nucleotide Sequence ATGGTGTTTCGGAACCCGTGGGGCCCTGAGACCTTGGGAGACCTGGTGGCTGCCATTCACCCAAGCTACTACGCCGTTCCCCGCCAGCAGTTCCCCTATGAGCGCAGGCGTGTTTCCACTGCCTTTGTGGCAGACAGCGAAGGGGACTTCTATTATGGTGGGGCAGTCTTCGGGGGGCAG
CircID chr9:133153817|133154026
ORF Type ORF5
Protein Length 63
Nucleotide Length 189
Protein Sequence MMWTWCFGTRGALRPWETWWLPFTQATTPFPASSSPMSAGVFPLPLWQTAKGTSIMVGQSSGG
Nucleotide Sequence TTGATGTGGACATGGTGTTTCGGAACCCGTGGGGCCCTGAGACCTTGGGAGACCTGGTGGCTGCCATTCACCCAAGCTACTACGCCGTTCCCCGCCAGCAGTTCCCCTATGAGCGCAGGCGTGTTTCCACTGCCTTTGTGGCAGACAGCGAAGGGGACTTCTATTATGGTGGGGCAGTCTTCGGGGGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab