CircRNA Information

General Information
circRNA Basic Information
CircID chr9:133340943|133341189
Strand -
CircType exon
Host Gene ENSG00000148297.14;
Algorism CIRI2;
Sequence AACGGCAGAATTAGGAATGAGTCCCACCTAGCTTCCACATGCGTGGGCAGCAGCTGTCACACGGGCCTGTCGTGGCACTCAGCCCATGGCACAGACATATGTGGCTCAGGGCAAGAACCAGTGGATGGGGCTCTGCACAGGAACGCTGGCCTCGGGATGGGAGACCCGGCCTGCCCAACACTGCTCAGAGCCCCTCCCAACTCTGACAACAGGCTCGGGTCAGGACTCCCCGAAATCAGGCACCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:133340943|133341189 hsa-miR-150-5p 0 0 1
chr9:133340943|133341189 hsa-miR-150-3p 0 0 1
chr9:133340943|133341189 hsa-miR-571 0 0 1
chr9:133340943|133341189 hsa-miR-874-5p 0 0 1
chr9:133340943|133341189 hsa-miR-874-3p 0 0 1
chr9:133340943|133341189 hsa-miR-760 0 0 1
chr9:133340943|133341189 hsa-miR-1227-5p 0 0 1
chr9:133340943|133341189 hsa-miR-1227-3p 0 0 1
chr9:133340943|133341189 hsa-miR-671-5p 1 0 1
chr9:133340943|133341189 hsa-miR-1225-3p 0 0 1
chr9:133340943|133341189 hsa-miR-615-3p 0 0 1
chr9:133340943|133341189 hsa-miR-532-3p 0 0 1
chr9:133340943|133341189 hsa-miR-542-5p 0 0 1
chr9:133340943|133341189 hsa-miR-146b-3p 0 0 1
chr9:133340943|133341189 hsa-miR-1289 0 0 1
chr9:133340943|133341189 hsa-miR-423-5p 0 0 1
chr9:133340943|133341189 hsa-miR-654-3p 0 0 1
chr9:133340943|133341189 hsa-miR-125a-5p 0 0 1
chr9:133340943|133341189 hsa-miR-542-3p 0 0 1
chr9:133340943|133341189 hsa-miR-125b 0 0 1
chr9:133340943|133341189 hsa-miR-550 0 0 1
chr9:133340943|133341189 hsa-miR-1201 0 0 1
chr9:133340943|133341189 hsa-miR-762 1 0 0
chr9:133340943|133341189 hsa-miR-1200 1 0 0
chr9:133340943|133341189 hsa-miR-1471 1 0 0
chr9:133340943|133341189 hsa-miR-1538 1 0 0
chr9:133340943|133341189 hsa-miR-4634 1 0 0
chr9:133340943|133341189 hsa-miR-4651 1 0 0
chr9:133340943|133341189 hsa-miR-4656 1 0 0
chr9:133340943|133341189 hsa-miR-6069 1 0 0
chr9:133340943|133341189 hsa-miR-143-5p 1 0 0
chr9:133340943|133341189 hsa-miR-6861-5p 1 0 0
chr9:133340943|133341189 hsa-miR-6089 1 0 0
chr9:133340943|133341189 hsa-miR-6741-5p 1 0 0
chr9:133340943|133341189 hsa-miR-6827-5p 1 0 0
chr9:133340943|133341189 hsa-miR-1909-5p 1 0 0
chr9:133340943|133341189 hsa-miR-296-3p 1 0 0
chr9:133340943|133341189 hsa-miR-6771-5p 1 0 0
chr9:133340943|133341189 hsa-miR-6823-5p 1 0 0
chr9:133340943|133341189 hsa-miR-6749-5p 1 0 0
chr9:133340943|133341189 hsa-miR-149-3p 1 0 0
chr9:133340943|133341189 hsa-miR-550b-2-5p 1 0 0
chr9:133340943|133341189 hsa-miR-4763-3p 1 0 0
chr9:133340943|133341189 hsa-miR-6726-5p 1 0 0
chr9:133340943|133341189 hsa-miR-6756-5p 1 0 0
chr9:133340943|133341189 hsa-miR-6779-5p 1 0 0
chr9:133340943|133341189 hsa-miR-4728-5p 1 0 0
chr9:133340943|133341189 hsa-miR-10396b-5p 1 0 0
chr9:133340943|133341189 hsa-miR-3085-5p 1 0 0
chr9:133340943|133341189 hsa-miR-3940-5p 1 0 0
chr9:133340943|133341189 hsa-miR-550a-3-5p 1 0 0
chr9:133340943|133341189 hsa-miR-550a-5p 1 0 0
chr9:133340943|133341189 hsa-miR-33b-3p 1 0 0
chr9:133340943|133341189 hsa-miR-6811-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:133340943|133341189
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence MSWHSAHGTDICGSGQEPVDGALHRNAGLGMGDPACPTLLRAPPNSDNRLGSGLPEIRHP
Nucleotide Sequence CTGTCGTGGCACTCAGCCCATGGCACAGACATATGTGGCTCAGGGCAAGAACCAGTGGATGGGGCTCTGCACAGGAACGCTGGCCTCGGGATGGGAGACCCGGCCTGCCCAACACTGCTCAGAGCCCCTCCCAACTCTGACAACAGGCTCGGGTCAGGACTCCCCGAAATCAGGCACCCT
CircID chr9:133340943|133341189
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MAQTYVAQGKNQWMGLCTGTLASGWETRPAQHCSEPLPTLTTGSGQDSPKSGTL
Nucleotide Sequence ATGGCACAGACATATGTGGCTCAGGGCAAGAACCAGTGGATGGGGCTCTGCACAGGAACGCTGGCCTCGGGATGGGAGACCCGGCCTGCCCAACACTGCTCAGAGCCCCTCCCAACTCTGACAACAGGCTCGGGTCAGGACTCCCCGAAATCAGGCACCCTC
CircID chr9:133340943|133341189
ORF Type ORF3
Protein Length 55
Nucleotide Length 168
Protein Sequence MRGQQLSHGPVVALSPWHRHMWLRARTSGWGSAQERWPRDGRPGLPNTAQSPSQL
Nucleotide Sequence ATGCGTGGGCAGCAGCTGTCACACGGGCCTGTCGTGGCACTCAGCCCATGGCACAGACATATGTGGCTCAGGGCAAGAACCAGTGGATGGGGCTCTGCACAGGAACGCTGGCCTCGGGATGGGAGACCCGGCCTGCCCAACACTGCTCAGAGCCCCTCCCAACTCTGA
CircID chr9:133340943|133341189
ORF Type ORF4
Protein Length 55
Nucleotide Length 168
Protein Sequence MGRPGLPSRGQRSCAEPHPLVLALSHICLCHGLSATTGPCDSCCPRMWKLGGTHS
Nucleotide Sequence TTGGGCAGGCCGGGTCTCCCATCCCGAGGCCAGCGTTCCTGTGCAGAGCCCCATCCACTGGTTCTTGCCCTGAGCCACATATGTCTGTGCCATGGGCTGAGTGCCACGACAGGCCCGTGTGACAGCTGCTGCCCACGCATGTGGAAGCTAGGTGGGACTCATTCCTAA
CircID chr9:133340943|133341189
ORF Type ORF5
Protein Length 60
Nucleotide Length 183
Protein Sequence MISGSPDPSLLSELGGALSSVGQAGSPIPRPAFLCRAPSTGSCPEPHMSVPWAECHDRPV
Nucleotide Sequence CTGATTTCGGGGAGTCCTGACCCGAGCCTGTTGTCAGAGTTGGGAGGGGCTCTGAGCAGTGTTGGGCAGGCCGGGTCTCCCATCCCGAGGCCAGCGTTCCTGTGCAGAGCCCCATCCACTGGTTCTTGCCCTGAGCCACATATGTCTGTGCCATGGGCTGAGTGCCACGACAGGCCCGTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab