CircRNA Information

General Information
circRNA Basic Information
CircID chr9:134158217|134158499
Strand +
CircType exon
Host Gene ENSG00000196363.8;
Algorism CIRI2;
Sequence TAGGAACAGCTACTGGCGGGAATGGAGGAGTCAGGGCCCTGGGCCAGGGCATCTACGCAGCAGAGAATGGGGGCGGCCGGCGTGGGCCAAAGGGGAGGCCAGCTGGCGGGGCCACGGTGGCGGTGACAGGCCACAGCGTGCACTGGGTCATGGAATATCAAAAAGATACAGAACGTTTACTGAAAAAACACAACGCATGTTAAATTGAACTTCACCCTTCTGTAATAAAAAATTAAAAACTTTTGTTGACTCTGTTTGAACACAATAGACTAGGAACTCTTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:134158217|134158499 hsa-miR-148a-5p 0 0 1
chr9:134158217|134158499 hsa-miR-148a-3p 0 0 1
chr9:134158217|134158499 hsa-miR-152-5p 0 0 1
chr9:134158217|134158499 hsa-miR-152-3p 0 0 1
chr9:134158217|134158499 hsa-miR-136-5p 0 0 1
chr9:134158217|134158499 hsa-miR-136-3p 0 0 1
chr9:134158217|134158499 hsa-miR-328-5p 0 0 1
chr9:134158217|134158499 hsa-miR-328-3p 0 0 1
chr9:134158217|134158499 hsa-miR-148b-5p 0 0 1
chr9:134158217|134158499 hsa-miR-148b-3p 0 0 1
chr9:134158217|134158499 hsa-miR-345-5p 0 0 1
chr9:134158217|134158499 hsa-miR-345-3p 0 0 1
chr9:134158217|134158499 hsa-miR-384 0 0 1
chr9:134158217|134158499 hsa-miR-505-5p 0 0 1
chr9:134158217|134158499 hsa-miR-505-3p 0 0 1
chr9:134158217|134158499 hsa-miR-561-5p 0 0 1
chr9:134158217|134158499 hsa-miR-561-3p 0 0 1
chr9:134158217|134158499 hsa-miR-874-5p 0 0 1
chr9:134158217|134158499 hsa-miR-874-3p 0 0 1
chr9:134158217|134158499 hsa-miR-663b 0 1 1
chr9:134158217|134158499 hsa-miR-1204 0 0 1
chr9:134158217|134158499 hsa-miR-1291 0 1 1
chr9:134158217|134158499 hsa-miR-1825 0 0 1
chr9:134158217|134158499 hsa-miR-146b-3p 0 0 1
chr9:134158217|134158499 hsa-miR-1207-3p 0 1 1
chr9:134158217|134158499 hsa-miR-590-3p 0 0 1
chr9:134158217|134158499 hsa-miR-556-3p 0 0 1
chr9:134158217|134158499 hsa-miR-326 1 0 0
chr9:134158217|134158499 hsa-miR-1538 1 0 0
chr9:134158217|134158499 hsa-miR-1913 1 1 0
chr9:134158217|134158499 hsa-miR-3181 1 0 0
chr9:134158217|134158499 hsa-miR-4313 1 0 0
chr9:134158217|134158499 hsa-miR-4258 0 1 0
chr9:134158217|134158499 hsa-miR-4292 1 0 0
chr9:134158217|134158499 hsa-miR-3943 1 0 0
chr9:134158217|134158499 hsa-miR-4526 1 0 0
chr9:134158217|134158499 hsa-miR-3972 1 0 0
chr9:134158217|134158499 hsa-miR-6084 1 1 0
chr9:134158217|134158499 hsa-miR-6749-3p 1 0 0
chr9:134158217|134158499 hsa-miR-4747-3p 1 0 0
chr9:134158217|134158499 hsa-miR-214-5p 0 1 0
chr9:134158217|134158499 hsa-miR-3194-3p 1 0 0
chr9:134158217|134158499 hsa-miR-4665-3p 1 0 0
chr9:134158217|134158499 hsa-miR-6836-3p 1 0 0
chr9:134158217|134158499 hsa-miR-671-5p 1 0 0
chr9:134158217|134158499 hsa-miR-149-5p 0 1 0
chr9:134158217|134158499 hsa-miR-205-5p 1 0 0
chr9:134158217|134158499 hsa-miR-296-5p 1 0 0
chr9:134158217|134158499 hsa-miR-6787-3p 1 0 0
chr9:134158217|134158499 hsa-miR-6735-3p 0 1 0
chr9:134158217|134158499 hsa-miR-939-3p 1 0 0
chr9:134158217|134158499 hsa-miR-1908-3p 1 0 0
chr9:134158217|134158499 hsa-miR-6821-3p 1 0 0
chr9:134158217|134158499 hsa-miR-6878-3p 0 1 0
chr9:134158217|134158499 hsa-miR-3190-5p 1 0 0
chr9:134158217|134158499 hsa-miR-7160-3p 1 1 0
chr9:134158217|134158499 hsa-miR-6743-3p 1 0 0
chr9:134158217|134158499 hsa-miR-4732-3p 0 1 0
chr9:134158217|134158499 hsa-miR-4758-3p 1 0 0
chr9:134158217|134158499 hsa-miR-4632-3p 1 1 0
chr9:134158217|134158499 hsa-miR-1296-5p 1 1 0
chr9:134158217|134158499 hsa-miR-6758-3p 1 0 0
chr9:134158217|134158499 hsa-miR-6777-3p 1 0 0
chr9:134158217|134158499 hsa-miR-6779-3p 0 1 0
chr9:134158217|134158499 hsa-miR-3121-3p 0 1 0
chr9:134158217|134158499 hsa-miR-4685-3p 1 1 0
chr9:134158217|134158499 hsa-miR-6836-5p 1 0 0
chr9:134158217|134158499 hsa-miR-4685-5p 0 1 0
chr9:134158217|134158499 hsa-miR-10396a-3p 1 0 0
chr9:134158217|134158499 hsa-miR-10396b-3p 1 0 0
chr9:134158217|134158499 hsa-miR-6799-3p 1 0 0
chr9:134158217|134158499 hsa-miR-6791-3p 1 0 0
chr9:134158217|134158499 hsa-miR-6753-3p 1 1 0
chr9:134158217|134158499 hsa-miR-4722-3p 1 0 0
chr9:134158217|134158499 hsa-miR-10401-3p 1 0 0
chr9:134158217|134158499 hsa-miR-6775-3p 1 1 0
chr9:134158217|134158499 hsa-miR-10392-3p 1 0 0
chr9:134158217|134158499 hsa-miR-3130-5p 0 1 0
chr9:134158217|134158499 hsa-miR-483-3p 1 1 0
chr9:134158217|134158499 hsa-miR-4691-5p 1 1 0
chr9:134158217|134158499 hsa-miR-6764-5p 1 1 0
chr9:134158217|134158499 hsa-miR-4482-5p 0 1 0
chr9:134158217|134158499 hsa-miR-3922-3p 0 1 0
chr9:134158217|134158499 hsa-miR-6820-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:134158217|134158499
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MAGMEESGPWARASTQQRMGAAGVGQRGGQLAGPRWR
Nucleotide Sequence CTGGCGGGAATGGAGGAGTCAGGGCCCTGGGCCAGGGCATCTACGCAGCAGAGAATGGGGGCGGCCGGCGTGGGCCAAAGGGGAGGCCAGCTGGCGGGGCCACGGTGGCGGTGA
CircID chr9:134158217|134158499
ORF Type ORF2
Protein Length 54
Nucleotide Length 165
Protein Sequence MGQGIYAAENGGGRRGPKGRPAGGATVAVTGHSVHWVMEYQKDTERLLKKHNAC
Nucleotide Sequence CTGGGCCAGGGCATCTACGCAGCAGAGAATGGGGGCGGCCGGCGTGGGCCAAAGGGGAGGCCAGCTGGCGGGGCCACGGTGGCGGTGACAGGCCACAGCGTGCACTGGGTCATGGAATATCAAAAAGATACAGAACGTTTACTGAAAAAACACAACGCATGTTAA
CircID chr9:134158217|134158499
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MTQCTLWPVTATVAPPAGLPFGPRRPPPFSAA
Nucleotide Sequence ATGACCCAGTGCACGCTGTGGCCTGTCACCGCCACCGTGGCCCCGCCAGCTGGCCTCCCCTTTGGCCCACGCCGGCCGCCCCCATTCTCTGCTGCGTAG
CircID chr9:134158217|134158499
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MSPPPWPRQLASPLAHAGRPHSLLRRCPGPGP
Nucleotide Sequence CTGTCACCGCCACCGTGGCCCCGCCAGCTGGCCTCCCCTTTGGCCCACGCCGGCCGCCCCCATTCTCTGCTGCGTAGATGCCCTGGCCCAGGGCCCTGA
CircID chr9:134158217|134158499
ORF Type ORF5
Protein Length 53
Nucleotide Length 159
Protein Sequence MIFHDPVHAVACHRHRGPASWPPLWPTPAAPILCCVDALAQGPDSSIPASSCS
Nucleotide Sequence TTGATATTCCATGACCCAGTGCACGCTGTGGCCTGTCACCGCCACCGTGGCCCCGCCAGCTGGCCTCCCCTTTGGCCCACGCCGGCCGCCCCCATTCTCTGCTGCGTAGATGCCCTGGCCCAGGGCCCTGACTCCTCCATTCCCGCCAGTAGCTGTTCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab