CircRNA Information

General Information
circRNA Basic Information
CircID chr9:134439408|134439653
Strand +
CircType exon
Host Gene ENSG00000186350.9;
Algorism CIRI2;
Sequence CCACAGGCTGCACATTCCGGCAGGGCCCTCCTGGGTGCCCCACGGGGAGGGGCTCGGGGTCATCTCCAGCACTGCCACCAGGCCGCCAGCCCAGAATTCTTGGGAAACACCGTGCTCGGAAAACCGAAGGTCAGGGCTGTCCTTCCCAGAGGCCGTGTGCTTCCAGGGTGCGGAGGGCCGGCGGCTGACACAGGCCCCAGGGTGGAAGGTCCTGGCAGGCCAGCTTCCAAGCATGCCCGACGCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:134439408|134439653 hsa-miR-34a-5p 0 0 1
chr9:134439408|134439653 hsa-miR-34a-3p 0 0 1
chr9:134439408|134439653 hsa-miR-143-5p 0 0 1
chr9:134439408|134439653 hsa-miR-143-3p 0 0 1
chr9:134439408|134439653 hsa-miR-206 0 0 1
chr9:134439408|134439653 hsa-miR-326 0 0 1
chr9:134439408|134439653 hsa-miR-449a 0 0 1
chr9:134439408|134439653 hsa-miR-592 0 0 1
chr9:134439408|134439653 hsa-miR-597-5p 0 0 1
chr9:134439408|134439653 hsa-miR-597-3p 0 0 1
chr9:134439408|134439653 hsa-miR-612 1 0 1
chr9:134439408|134439653 hsa-miR-613 0 0 1
chr9:134439408|134439653 hsa-miR-620 0 0 1
chr9:134439408|134439653 hsa-miR-449b-5p 0 0 1
chr9:134439408|134439653 hsa-miR-449b-3p 0 0 1
chr9:134439408|134439653 hsa-miR-665 0 0 1
chr9:134439408|134439653 hsa-miR-1234-3p 0 0 1
chr9:134439408|134439653 hsa-miR-1287-5p 0 0 1
chr9:134439408|134439653 hsa-miR-1287-3p 0 0 1
chr9:134439408|134439653 hsa-miR-1291 0 0 1
chr9:134439408|134439653 hsa-miR-1270 0 0 1
chr9:134439408|134439653 hsa-miR-1234 0 0 1
chr9:134439408|134439653 hsa-miR-671-5p 0 0 1
chr9:134439408|134439653 hsa-miR-1225-3p 0 0 1
chr9:134439408|134439653 hsa-miR-512-3p 0 0 1
chr9:134439408|134439653 hsa-miR-486-3p 0 0 1
chr9:134439408|134439653 hsa-miR-615-3p 0 0 1
chr9:134439408|134439653 hsa-miR-330-5p 0 0 1
chr9:134439408|134439653 hsa-miR-34c-5p 0 0 1
chr9:134439408|134439653 hsa-miR-1285 0 0 1
chr9:134439408|134439653 hsa-miR-1 0 0 1
chr9:134439408|134439653 hsa-miR-762 1 0 0
chr9:134439408|134439653 hsa-miR-1181 1 0 0
chr9:134439408|134439653 hsa-miR-2861 1 0 0
chr9:134439408|134439653 hsa-miR-4269 1 0 0
chr9:134439408|134439653 hsa-miR-4498 1 0 0
chr9:134439408|134439653 hsa-miR-9899 1 0 0
chr9:134439408|134439653 hsa-miR-370-3p 1 0 0
chr9:134439408|134439653 hsa-miR-4665-3p 1 0 0
chr9:134439408|134439653 hsa-miR-6861-5p 1 0 0
chr9:134439408|134439653 hsa-miR-4722-5p 1 0 0
chr9:134439408|134439653 hsa-miR-6727-5p 1 0 0
chr9:134439408|134439653 hsa-miR-1288-3p 1 0 0
chr9:134439408|134439653 hsa-miR-6735-3p 1 0 0
chr9:134439408|134439653 hsa-miR-6763-3p 1 0 0
chr9:134439408|134439653 hsa-miR-3944-3p 1 0 0
chr9:134439408|134439653 hsa-miR-1908-3p 1 0 0
chr9:134439408|134439653 hsa-miR-1199-3p 1 0 0
chr9:134439408|134439653 hsa-miR-541-5p 1 0 0
chr9:134439408|134439653 hsa-miR-10400-5p 1 0 0
chr9:134439408|134439653 hsa-miR-6865-5p 1 0 0
chr9:134439408|134439653 hsa-miR-5001-5p 1 0 0
chr9:134439408|134439653 hsa-miR-6737-5p 1 0 0
chr9:134439408|134439653 hsa-miR-3620-5p 1 0 0
chr9:134439408|134439653 hsa-miR-5189-5p 1 0 0
chr9:134439408|134439653 hsa-miR-939-5p 1 0 0
chr9:134439408|134439653 hsa-miR-6762-5p 1 0 0
chr9:134439408|134439653 hsa-miR-4757-5p 1 0 0
chr9:134439408|134439653 hsa-miR-9851-5p 1 0 0
chr9:134439408|134439653 hsa-miR-6797-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:134439408|134439653
ORF Type ORF1
Protein Length 72
Nucleotide Length 216
Protein Sequence MGAPRGGARGHLQHCHQAASPEFLGNTVLGKPKVRAVLPRGRVLPGCGGPAADTGPRVEGPGRPASKHARRS
Nucleotide Sequence CTGGGTGCCCCACGGGGAGGGGCTCGGGGTCATCTCCAGCACTGCCACCAGGCCGCCAGCCCAGAATTCTTGGGAAACACCGTGCTCGGAAAACCGAAGGTCAGGGCTGTCCTTCCCAGAGGCCGTGTGCTTCCAGGGTGCGGAGGGCCGGCGGCTGACACAGGCCCCAGGGTGGAAGGTCCTGGCAGGCCAGCTTCCAAGCATGCCCGACGCAGC
CircID chr9:134439408|134439653
ORF Type ORF2
Protein Length 79
Nucleotide Length 237
Protein Sequence MHIPAGPSWVPHGEGLGVISSTATRPPAQNSWETPCSENRRSGLSFPEAVCFQGAEGRRLTQAPGWKVLAGQLPSMPDA
Nucleotide Sequence CTGCACATTCCGGCAGGGCCCTCCTGGGTGCCCCACGGGGAGGGGCTCGGGGTCATCTCCAGCACTGCCACCAGGCCGCCAGCCCAGAATTCTTGGGAAACACCGTGCTCGGAAAACCGAAGGTCAGGGCTGTCCTTCCCAGAGGCCGTGTGCTTCCAGGGTGCGGAGGGCCGGCGGCTGACACAGGCCCCAGGGTGGAAGGTCCTGGCAGGCCAGCTTCCAAGCATGCCCGACGCA
CircID chr9:134439408|134439653
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MPPGRQPRILGKHRARKTEGQGCPSQRPCASRVRRAGG
Nucleotide Sequence CTGCCACCAGGCCGCCAGCCCAGAATTCTTGGGAAACACCGTGCTCGGAAAACCGAAGGTCAGGGCTGTCCTTCCCAGAGGCCGTGTGCTTCCAGGGTGCGGAGGGCCGGCGGCTGA
CircID chr9:134439408|134439653
ORF Type ORF4
Protein Length 78
Nucleotide Length 234
Protein Sequence MLGSWPARTFHPGACVSRRPSAPWKHTASGKDSPDLRFSEHGVSQEFWAGGLVAVLEMTPSPSPWGTQEGPAGMCSLW
Nucleotide Sequence ATGCTTGGAAGCTGGCCTGCCAGGACCTTCCACCCTGGGGCCTGTGTCAGCCGCCGGCCCTCCGCACCCTGGAAGCACACGGCCTCTGGGAAGGACAGCCCTGACCTTCGGTTTTCCGAGCACGGTGTTTCCCAAGAATTCTGGGCTGGCGGCCTGGTGGCAGTGCTGGAGATGACCCCGAGCCCCTCCCCGTGGGGCACCCAGGAGGGCCCTGCCGGAATGTGCAGCCTGTGG
CircID chr9:134439408|134439653
ORF Type ORF5
Protein Length 61
Nucleotide Length 186
Protein Sequence LRRACLEAGLPGPSTLGPVSAAGPPHPGSTRPLGRTALTFGFPSTVFPKNSGLAAWWQCWR
Nucleotide Sequence CTGCGTCGGGCATGCTTGGAAGCTGGCCTGCCAGGACCTTCCACCCTGGGGCCTGTGTCAGCCGCCGGCCCTCCGCACCCTGGAAGCACACGGCCTCTGGGAAGGACAGCCCTGACCTTCGGTTTTCCGAGCACGGTGTTTCCCAAGAATTCTGGGCTGGCGGCCTGGTGGCAGTGCTGGAGATGA
CircID chr9:134439408|134439653
ORF Type ORF6
Protein Length 30
Nucleotide Length 93
Protein Sequence MACQDLPPWGLCQPPALRTLEAHGLWEGQP
Nucleotide Sequence CTGGCCTGCCAGGACCTTCCACCCTGGGGCCTGTGTCAGCCGCCGGCCCTCCGCACCCTGGAAGCACACGGCCTCTGGGAAGGACAGCCCTGA
CircID chr9:134439408|134439653
ORF Type ORF7
Protein Length 31
Nucleotide Length 93
Protein Sequence MGWRPGGSAGDDPEPLPVGHPGGPCRNVQPV
Nucleotide Sequence CTGGGCTGGCGGCCTGGTGGCAGTGCTGGAGATGACCCCGAGCCCCTCCCCGTGGGGCACCCAGGAGGGCCCTGCCGGAATGTGCAGCCTGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab