CircRNA Information

General Information
circRNA Basic Information
CircID chr9:135945969|135946329
Strand -
CircType exon
Host Gene ENSG00000130560.7;
Algorism CIRI2;
Sequence ACGCTCATCCTCGTCCTCGTCCAGCATTGCTGCAGGGAGACGACAGGGCCATGAGGGCTCCAGCCTCAGGTTCAGGGGCCTTATCTGAGCACAAACATTTGCAGCAATTATCTGTCTGAGCTCCACCTGCCCGCCCTCAGGCACATCAACAGGAGTTGCCGGTGAGGCAGGCCCCAGGCCCTCATCAGCGCTTCCATAAAGCACTGAGGTTCCGGTCAGTGGTCAGTGCGTGGAGCTGCAGACGCTCCCCAAGGCCGGCAGTGAACCGCCCTGGAATGCAGCATCGGGGTTGACTCATACCATTCGCCTTCTTAAACAATTCCACTGCATCTGGGTTCAGCGCTAACAGCTTCTGCGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:135945969|135946329 hsa-miR-107 0 0 1
chr9:135945969|135946329 hsa-miR-148a-5p 0 0 1
chr9:135945969|135946329 hsa-miR-148a-3p 0 0 1
chr9:135945969|135946329 hsa-miR-152-5p 0 0 1
chr9:135945969|135946329 hsa-miR-152-3p 0 0 1
chr9:135945969|135946329 hsa-miR-328-5p 0 0 1
chr9:135945969|135946329 hsa-miR-328-3p 0 0 1
chr9:135945969|135946329 hsa-miR-148b-5p 0 0 1
chr9:135945969|135946329 hsa-miR-148b-3p 0 0 1
chr9:135945969|135946329 hsa-miR-520f-5p 0 0 1
chr9:135945969|135946329 hsa-miR-520f-3p 0 0 1
chr9:135945969|135946329 hsa-miR-518e-5p 0 0 1
chr9:135945969|135946329 hsa-miR-518e-3p 0 0 1
chr9:135945969|135946329 hsa-miR-611 0 0 1
chr9:135945969|135946329 hsa-miR-661 0 1 1
chr9:135945969|135946329 hsa-miR-1301-5p 0 0 1
chr9:135945969|135946329 hsa-miR-1301-3p 0 0 1
chr9:135945969|135946329 hsa-miR-298 0 1 1
chr9:135945969|135946329 hsa-miR-939-5p 0 0 1
chr9:135945969|135946329 hsa-miR-939-3p 0 0 1
chr9:135945969|135946329 hsa-miR-1205 0 0 1
chr9:135945969|135946329 hsa-miR-1287-5p 0 0 1
chr9:135945969|135946329 hsa-miR-1287-3p 0 0 1
chr9:135945969|135946329 hsa-miR-1291 0 0 1
chr9:135945969|135946329 hsa-miR-1255a 0 0 1
chr9:135945969|135946329 hsa-miR-1267 0 1 1
chr9:135945969|135946329 hsa-miR-302f 0 0 1
chr9:135945969|135946329 hsa-miR-1324 0 0 1
chr9:135945969|135946329 hsa-miR-671-5p 1 1 1
chr9:135945969|135946329 hsa-miR-485-5p 0 1 1
chr9:135945969|135946329 hsa-miR-146b-3p 0 0 1
chr9:135945969|135946329 hsa-miR-339-5p 0 1 1
chr9:135945969|135946329 hsa-miR-1184 0 1 1
chr9:135945969|135946329 hsa-miR-455-5p 0 0 1
chr9:135945969|135946329 hsa-miR-521 0 0 1
chr9:135945969|135946329 hsa-miR-1233 0 0 1
chr9:135945969|135946329 hsa-miR-550 0 0 1
chr9:135945969|135946329 hsa-miR-103 0 0 1
chr9:135945969|135946329 hsa-miR-1255b 0 0 1
chr9:135945969|135946329 hsa-miR-218 0 0 1
chr9:135945969|135946329 hsa-miR-219-2-3p 0 0 1
chr9:135945969|135946329 hsa-miR-1201 0 0 1
chr9:135945969|135946329 hsa-miR-637 1 0 0
chr9:135945969|135946329 hsa-miR-638 1 0 0
chr9:135945969|135946329 hsa-miR-639 1 0 0
chr9:135945969|135946329 hsa-miR-762 1 0 0
chr9:135945969|135946329 hsa-miR-2861 1 1 0
chr9:135945969|135946329 hsa-miR-3131 0 1 0
chr9:135945969|135946329 hsa-miR-544b 0 1 0
chr9:135945969|135946329 hsa-miR-3139 1 1 0
chr9:135945969|135946329 hsa-miR-3141 1 1 0
chr9:135945969|135946329 hsa-miR-3185 1 1 0
chr9:135945969|135946329 hsa-miR-4330 0 1 0
chr9:135945969|135946329 hsa-miR-3135b 1 0 0
chr9:135945969|135946329 hsa-miR-4488 1 0 0
chr9:135945969|135946329 hsa-miR-4512 0 1 0
chr9:135945969|135946329 hsa-miR-4539 0 1 0
chr9:135945969|135946329 hsa-miR-4657 1 0 0
chr9:135945969|135946329 hsa-miR-4706 1 0 0
chr9:135945969|135946329 hsa-miR-4780 0 1 0
chr9:135945969|135946329 hsa-miR-5192 1 0 0
chr9:135945969|135946329 hsa-miR-5787 1 0 0
chr9:135945969|135946329 hsa-miR-6077 1 0 0
chr9:135945969|135946329 hsa-miR-6090 1 0 0
chr9:135945969|135946329 hsa-miR-6125 1 0 0
chr9:135945969|135946329 hsa-miR-7706 1 0 0
chr9:135945969|135946329 hsa-miR-8075 0 1 0
chr9:135945969|135946329 hsa-miR-12114 0 1 0
chr9:135945969|135946329 hsa-miR-12115 1 0 0
chr9:135945969|135946329 hsa-miR-6747-3p 0 1 0
chr9:135945969|135946329 hsa-miR-6854-5p 0 1 0
chr9:135945969|135946329 hsa-miR-6089 1 0 0
chr9:135945969|135946329 hsa-miR-4695-5p 1 0 0
chr9:135945969|135946329 hsa-miR-181a-2-3p 0 1 0
chr9:135945969|135946329 hsa-miR-423-3p 1 0 0
chr9:135945969|135946329 hsa-miR-3180-3p 1 0 0
chr9:135945969|135946329 hsa-miR-6805-5p 1 0 0
chr9:135945969|135946329 hsa-miR-6874-5p 0 1 0
chr9:135945969|135946329 hsa-miR-5008-5p 1 0 0
chr9:135945969|135946329 hsa-miR-345-3p 0 1 0
chr9:135945969|135946329 hsa-miR-1343-3p 0 1 0
chr9:135945969|135946329 hsa-miR-6786-5p 1 0 0
chr9:135945969|135946329 hsa-miR-1226-5p 1 1 0
chr9:135945969|135946329 hsa-miR-4763-5p 0 1 0
chr9:135945969|135946329 hsa-miR-4783-3p 1 0 0
chr9:135945969|135946329 hsa-miR-6736-3p 0 1 0
chr9:135945969|135946329 hsa-miR-6824-5p 1 0 0
chr9:135945969|135946329 hsa-miR-550b-2-5p 1 1 0
chr9:135945969|135946329 hsa-miR-450a-2-3p 0 1 0
chr9:135945969|135946329 hsa-miR-7112-5p 0 1 0
chr9:135945969|135946329 hsa-miR-4707-5p 1 0 0
chr9:135945969|135946329 hsa-miR-382-5p 0 1 0
chr9:135945969|135946329 hsa-miR-4649-3p 0 1 0
chr9:135945969|135946329 hsa-miR-937-3p 0 1 0
chr9:135945969|135946329 hsa-miR-6847-3p 0 1 0
chr9:135945969|135946329 hsa-miR-4524b-3p 1 1 0
chr9:135945969|135946329 hsa-miR-1207-5p 1 0 0
chr9:135945969|135946329 hsa-miR-4763-3p 1 0 0
chr9:135945969|135946329 hsa-miR-6787-5p 1 0 0
chr9:135945969|135946329 hsa-miR-6816-5p 1 0 0
chr9:135945969|135946329 hsa-miR-1343-5p 1 0 0
chr9:135945969|135946329 hsa-miR-3180 1 0 0
chr9:135945969|135946329 hsa-miR-5001-5p 1 0 0
chr9:135945969|135946329 hsa-miR-6737-5p 1 0 0
chr9:135945969|135946329 hsa-miR-6756-5p 1 0 0
chr9:135945969|135946329 hsa-miR-6813-5p 1 0 0
chr9:135945969|135946329 hsa-miR-6763-5p 0 1 0
chr9:135945969|135946329 hsa-miR-10396b-5p 1 0 0
chr9:135945969|135946329 hsa-miR-4685-5p 1 0 0
chr9:135945969|135946329 hsa-miR-6729-5p 1 1 0
chr9:135945969|135946329 hsa-miR-6885-5p 1 0 0
chr9:135945969|135946329 hsa-miR-4769-5p 1 0 0
chr9:135945969|135946329 hsa-miR-6785-5p 1 0 0
chr9:135945969|135946329 hsa-miR-6849-5p 1 0 0
chr9:135945969|135946329 hsa-miR-6791-5p 1 0 0
chr9:135945969|135946329 hsa-miR-550a-3-5p 1 1 0
chr9:135945969|135946329 hsa-miR-550a-5p 1 1 0
chr9:135945969|135946329 hsa-miR-6775-3p 0 1 0
chr9:135945969|135946329 hsa-miR-1295b-5p 0 1 0
chr9:135945969|135946329 hsa-miR-1912-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:135945969|135946329
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MSTNICSNYLSELHLPALRHINRSCR
Nucleotide Sequence CTGAGCACAAACATTTGCAGCAATTATCTGTCTGAGCTCCACCTGCCCGCCCTCAGGCACATCAACAGGAGTTGCCGGTGA
CircID chr9:135945969|135946329
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MSSTCPPSGTSTGVAGEAGPRPSSALP
Nucleotide Sequence CTGAGCTCCACCTGCCCGCCCTCAGGCACATCAACAGGAGTTGCCGGTGAGGCAGGCCCCAGGCCCTCATCAGCGCTTCCATAA
CircID chr9:135945969|135946329
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MQTLPKAGSEPPWNAASGLTHTIRLLKQFHCIWVQR
Nucleotide Sequence CTGCAGACGCTCCCCAAGGCCGGCAGTGAACCGCCCTGGAATGCAGCATCGGGGTTGACTCATACCATTCGCCTTCTTAAACAATTCCACTGCATCTGGGTTCAGCGCTAA
CircID chr9:135945969|135946329
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MLQGDDRAMRAPASGSGALSEHKHLQQLSV
Nucleotide Sequence TTGCTGCAGGGAGACGACAGGGCCATGAGGGCTCCAGCCTCAGGTTCAGGGGCCTTATCTGAGCACAAACATTTGCAGCAATTATCTGTCTGA
CircID chr9:135945969|135946329
ORF Type ORF5
Protein Length 45
Nucleotide Length 138
Protein Sequence MPVRQAPGPHQRFHKALRFRSVVSAWSCRRSPRPAVNRPGMQHRG
Nucleotide Sequence TTGCCGGTGAGGCAGGCCCCAGGCCCTCATCAGCGCTTCCATAAAGCACTGAGGTTCCGGTCAGTGGTCAGTGCGTGGAGCTGCAGACGCTCCCCAAGGCCGGCAGTGAACCGCCCTGGAATGCAGCATCGGGGTTGA
CircID chr9:135945969|135946329
ORF Type ORF6
Protein Length 54
Nucleotide Length 165
Protein Sequence MLALNPDAVELFKKANGMSQPRCCIPGRFTAGLGERLQLHALTTDRNLSALWKR
Nucleotide Sequence CTGTTAGCGCTGAACCCAGATGCAGTGGAATTGTTTAAGAAGGCGAATGGTATGAGTCAACCCCGATGCTGCATTCCAGGGCGGTTCACTGCCGGCCTTGGGGAGCGTCTGCAGCTCCACGCACTGACCACTGACCGGAACCTCAGTGCTTTATGGAAGCGCTGA
CircID chr9:135945969|135946329
ORF Type ORF7
Protein Length 29
Nucleotide Length 90
Protein Sequence MCSDKAPEPEAGALMALSSPCSNAGRGRG
Nucleotide Sequence TTGTGCTCAGATAAGGCCCCTGAACCTGAGGCTGGAGCCCTCATGGCCCTGTCGTCTCCCTGCAGCAATGCTGGACGAGGACGAGGATGA
CircID chr9:135945969|135946329
ORF Type ORF8
Protein Length 73
Nucleotide Length 219
Protein Sequence MTGTSVLYGSADEGLGPASPATPVDVPEGGQVELRQIIAANVCAQIRPLNLRLEPSWPCRLPAAMLDEDEDER
Nucleotide Sequence CTGACCGGAACCTCAGTGCTTTATGGAAGCGCTGATGAGGGCCTGGGGCCTGCCTCACCGGCAACTCCTGTTGATGTGCCTGAGGGCGGGCAGGTGGAGCTCAGACAGATAATTGCTGCAAATGTTTGTGCTCAGATAAGGCCCCTGAACCTGAGGCTGGAGCCCTCATGGCCCTGTCGTCTCCCTGCAGCAATGCTGGACGAGGACGAGGATGAGCGT
CircID chr9:135945969|135946329
ORF Type ORF9
Protein Length 29
Nucleotide Length 90
Protein Sequence MEALMRAWGLPHRQLLLMCLRAGRWSSDR
Nucleotide Sequence ATGGAAGCGCTGATGAGGGCCTGGGGCCTGCCTCACCGGCAACTCCTGTTGATGTGCCTGAGGGCGGGCAGGTGGAGCTCAGACAGATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab