CircRNA Information

General Information
circRNA Basic Information
CircID chr9:136340306|136340556
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTCTCAGCCCCTGCCTTGTGCGCCGAGGCTCTGTGGGGGACCCTCCCGGGAACATCCACATCACTCAGGAACTAACTGTTTGCTTAAGTCAAGCAGAAGAGAGGTGGCATGGGGTTGGGGGGAGGGCCACATGGAGCCCTGGAAGGCCCTGGAGGCTGTAGCCTGCACTCAGAGGGACACGGGGGCTGCCTGCTGGCTGCCAGTGAAGCTCTTCAGACGAGGGCTCTGCTGACCTTCCCATGCCCGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:136340306|136340556 hsa-miR-214-5p 0 0 1
chr9:136340306|136340556 hsa-miR-214-3p 0 0 1
chr9:136340306|136340556 hsa-miR-328-5p 0 0 1
chr9:136340306|136340556 hsa-miR-328-3p 0 0 1
chr9:136340306|136340556 hsa-miR-493-5p 0 0 1
chr9:136340306|136340556 hsa-miR-493-3p 0 0 1
chr9:136340306|136340556 hsa-miR-922 0 0 1
chr9:136340306|136340556 hsa-miR-940 0 0 1
chr9:136340306|136340556 hsa-miR-1236-5p 0 0 1
chr9:136340306|136340556 hsa-miR-1236-3p 0 0 1
chr9:136340306|136340556 hsa-miR-1200 1 0 1
chr9:136340306|136340556 hsa-miR-663b 0 0 1
chr9:136340306|136340556 hsa-miR-1291 0 0 1
chr9:136340306|136340556 hsa-miR-1307-5p 0 0 1
chr9:136340306|136340556 hsa-miR-1307-3p 0 0 1
chr9:136340306|136340556 hsa-miR-885-3p 0 0 1
chr9:136340306|136340556 hsa-miR-361-3p 0 0 1
chr9:136340306|136340556 hsa-miR-1207-5p 0 1 1
chr9:136340306|136340556 hsa-miR-1233 0 0 1
chr9:136340306|136340556 hsa-miR-642 0 0 1
chr9:136340306|136340556 hsa-miR-484 1 0 0
chr9:136340306|136340556 hsa-miR-1469 1 1 0
chr9:136340306|136340556 hsa-miR-4290 0 1 0
chr9:136340306|136340556 hsa-miR-3921 0 1 0
chr9:136340306|136340556 hsa-miR-3943 0 1 0
chr9:136340306|136340556 hsa-miR-4449 1 0 0
chr9:136340306|136340556 hsa-miR-4457 0 1 0
chr9:136340306|136340556 hsa-miR-4641 1 0 0
chr9:136340306|136340556 hsa-miR-4656 0 1 0
chr9:136340306|136340556 hsa-miR-4657 0 1 0
chr9:136340306|136340556 hsa-miR-4658 1 0 0
chr9:136340306|136340556 hsa-miR-4692 0 1 0
chr9:136340306|136340556 hsa-miR-4734 1 0 0
chr9:136340306|136340556 hsa-miR-5193 0 1 0
chr9:136340306|136340556 hsa-miR-6085 0 1 0
chr9:136340306|136340556 hsa-miR-6822-3p 1 1 0
chr9:136340306|136340556 hsa-miR-6892-3p 1 1 0
chr9:136340306|136340556 hsa-miR-6799-5p 0 1 0
chr9:136340306|136340556 hsa-miR-1225-3p 1 0 0
chr9:136340306|136340556 hsa-miR-6727-5p 1 0 0
chr9:136340306|136340556 hsa-miR-3622b-5p 0 1 0
chr9:136340306|136340556 hsa-miR-6806-5p 1 0 0
chr9:136340306|136340556 hsa-miR-1178-5p 0 1 0
chr9:136340306|136340556 hsa-miR-659-3p 1 0 0
chr9:136340306|136340556 hsa-miR-23a-5p 1 0 0
chr9:136340306|136340556 hsa-miR-6774-3p 0 1 0
chr9:136340306|136340556 hsa-miR-4715-3p 0 1 0
chr9:136340306|136340556 hsa-miR-7113-3p 1 0 0
chr9:136340306|136340556 hsa-miR-3667-3p 1 0 0
chr9:136340306|136340556 hsa-miR-6771-5p 1 0 0
chr9:136340306|136340556 hsa-miR-4667-3p 0 1 0
chr9:136340306|136340556 hsa-miR-149-3p 1 0 0
chr9:136340306|136340556 hsa-miR-4707-5p 1 0 0
chr9:136340306|136340556 hsa-miR-4687-5p 1 1 0
chr9:136340306|136340556 hsa-miR-3180-5p 1 0 0
chr9:136340306|136340556 hsa-miR-6793-3p 1 1 0
chr9:136340306|136340556 hsa-miR-6741-3p 1 0 0
chr9:136340306|136340556 hsa-miR-6872-3p 0 1 0
chr9:136340306|136340556 hsa-miR-6837-3p 0 1 0
chr9:136340306|136340556 hsa-miR-3605-3p 0 1 0
chr9:136340306|136340556 hsa-miR-670-5p 1 0 0
chr9:136340306|136340556 hsa-miR-6789-3p 1 0 0
chr9:136340306|136340556 hsa-miR-4716-5p 1 0 0
chr9:136340306|136340556 hsa-miR-4763-3p 0 1 0
chr9:136340306|136340556 hsa-miR-6893-5p 0 1 0
chr9:136340306|136340556 hsa-miR-6813-5p 0 1 0
chr9:136340306|136340556 hsa-miR-6722-3p 0 1 0
chr9:136340306|136340556 hsa-miR-6797-5p 1 0 0
chr9:136340306|136340556 hsa-miR-6808-5p 0 1 0
chr9:136340306|136340556 hsa-miR-4728-5p 1 0 0
chr9:136340306|136340556 hsa-miR-5196-5p 0 1 0
chr9:136340306|136340556 hsa-miR-6780b-5p 1 0 0
chr9:136340306|136340556 hsa-miR-6836-5p 1 1 0
chr9:136340306|136340556 hsa-miR-1909-3p 0 1 0
chr9:136340306|136340556 hsa-miR-4685-5p 0 1 0
chr9:136340306|136340556 hsa-miR-4745-5p 1 0 0
chr9:136340306|136340556 hsa-miR-675-5p 1 0 0
chr9:136340306|136340556 hsa-miR-6883-5p 0 1 0
chr9:136340306|136340556 hsa-miR-4758-5p 1 0 0
chr9:136340306|136340556 hsa-miR-10394-3p 1 0 0
chr9:136340306|136340556 hsa-miR-4747-5p 0 1 0
chr9:136340306|136340556 hsa-miR-550a-5p 1 0 0
chr9:136340306|136340556 hsa-miR-6837-5p 1 1 0
chr9:136340306|136340556 hsa-miR-6775-3p 1 0 0
chr9:136340306|136340556 hsa-miR-5581-5p 0 1 0
chr9:136340306|136340556 hsa-miR-3619-5p 1 1 0
chr9:136340306|136340556 hsa-miR-4653-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:136340306|136340556
ORF Type ORF1
Protein Length 73
Nucleotide Length 222
Protein Sequence MPCAPRLCGGPSREHPHHSGTNCLLKSSRREVAWGWGEGHMEPWKALEAVACTQRDTGAACWLPVKLFRRGLC
Nucleotide Sequence CTGCCTTGTGCGCCGAGGCTCTGTGGGGGACCCTCCCGGGAACATCCACATCACTCAGGAACTAACTGTTTGCTTAAGTCAAGCAGAAGAGAGGTGGCATGGGGTTGGGGGGAGGGCCACATGGAGCCCTGGAAGGCCCTGGAGGCTGTAGCCTGCACTCAGAGGGACACGGGGGCTGCCTGCTGGCTGCCAGTGAAGCTCTTCAGACGAGGGCTCTGCTGA
CircID chr9:136340306|136340556
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MGLGGGPHGALEGPGGCSLHSEGHGGCLLAASEALQTRALLTFPCPP
Nucleotide Sequence ATGGGGTTGGGGGGAGGGCCACATGGAGCCCTGGAAGGCCCTGGAGGCTGTAGCCTGCACTCAGAGGGACACGGGGGCTGCCTGCTGGCTGCCAGTGAAGCTCTTCAGACGAGGGCTCTGCTGACCTTCCCATGCCCGCCC
CircID chr9:136340306|136340556
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MAASRQPPCPSECRLQPPGPSRAPCGPPPNPMPPLFCLT
Nucleotide Sequence CTGGCAGCCAGCAGGCAGCCCCCGTGTCCCTCTGAGTGCAGGCTACAGCCTCCAGGGCCTTCCAGGGCTCCATGTGGCCCTCCCCCCAACCCCATGCCACCTCTCTTCTGCTTGACTTAA
CircID chr9:136340306|136340556
ORF Type ORF4
Protein Length 50
Nucleotide Length 153
Protein Sequence MGRSAEPSSEELHWQPAGSPRVPLSAGYSLQGLPGLHVALPPTPCHLSSA
Nucleotide Sequence ATGGGAAGGTCAGCAGAGCCCTCGTCTGAAGAGCTTCACTGGCAGCCAGCAGGCAGCCCCCGTGTCCCTCTGAGTGCAGGCTACAGCCTCCAGGGCCTTCCAGGGCTCCATGTGGCCCTCCCCCCAACCCCATGCCACCTCTCTTCTGCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab