CircRNA Information

General Information
circRNA Basic Information
CircID chr9:136477345|136477520
Strand -
CircType exon
Host Gene ENSG00000148396.17;
Algorism CIRI2;
Sequence CGGGGTGCTGAGAAAACCCTGCGGGGGCTGGGCCTTGCAAGACAGGTGGACTGCTTTTGGACGAACTGCCCAGTGGTGTACTTTGGAGCGCCTGTCTACTAAAAGCAAATGGATCCGTGACCGGCTGCAACGGGCAAGTTGTCGGAGCCACTGCTGCATTATTATTAGCCCGTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:136477345|136477520 hsa-miR-107 0 0 1
chr9:136477345|136477520 hsa-miR-431-5p 0 0 1
chr9:136477345|136477520 hsa-miR-431-3p 0 0 1
chr9:136477345|136477520 hsa-miR-612 1 1 1
chr9:136477345|136477520 hsa-miR-411-5p 0 0 1
chr9:136477345|136477520 hsa-miR-411-3p 0 0 1
chr9:136477345|136477520 hsa-miR-1301-5p 0 0 1
chr9:136477345|136477520 hsa-miR-1301-3p 0 0 1
chr9:136477345|136477520 hsa-miR-548k 0 0 1
chr9:136477345|136477520 hsa-miR-127-3p 0 1 1
chr9:136477345|136477520 hsa-miR-483-5p 0 0 1
chr9:136477345|136477520 hsa-miR-455-3p 0 0 1
chr9:136477345|136477520 hsa-miR-103 0 0 1
chr9:136477345|136477520 hsa-miR-1285 0 0 1
chr9:136477345|136477520 hsa-miR-549 0 0 1
chr9:136477345|136477520 hsa-miR-484 1 0 0
chr9:136477345|136477520 hsa-miR-602 1 0 0
chr9:136477345|136477520 hsa-miR-1205 0 1 0
chr9:136477345|136477520 hsa-miR-3714 1 0 0
chr9:136477345|136477520 hsa-miR-3943 0 1 0
chr9:136477345|136477520 hsa-miR-4421 0 1 0
chr9:136477345|136477520 hsa-miR-3973 0 1 0
chr9:136477345|136477520 hsa-miR-4656 1 0 0
chr9:136477345|136477520 hsa-miR-5693 0 1 0
chr9:136477345|136477520 hsa-miR-8054 0 1 0
chr9:136477345|136477520 hsa-miR-12115 1 0 0
chr9:136477345|136477520 hsa-miR-6861-5p 1 0 0
chr9:136477345|136477520 hsa-miR-6720-5p 1 0 0
chr9:136477345|136477520 hsa-miR-6089 1 0 0
chr9:136477345|136477520 hsa-miR-6765-3p 1 0 0
chr9:136477345|136477520 hsa-miR-1908-3p 1 0 0
chr9:136477345|136477520 hsa-miR-7156-3p 0 1 0
chr9:136477345|136477520 hsa-miR-664b-5p 0 1 0
chr9:136477345|136477520 hsa-miR-3922-5p 0 1 0
chr9:136477345|136477520 hsa-miR-4708-3p 0 1 0
chr9:136477345|136477520 hsa-miR-519d-5p 0 1 0
chr9:136477345|136477520 hsa-miR-653-3p 0 1 0
chr9:136477345|136477520 hsa-miR-6839-3p 0 1 0
chr9:136477345|136477520 hsa-miR-4763-3p 1 0 0
chr9:136477345|136477520 hsa-miR-6836-5p 1 0 0
chr9:136477345|136477520 hsa-miR-4632-5p 1 0 0
chr9:136477345|136477520 hsa-miR-3187-5p 0 1 0
chr9:136477345|136477520 hsa-miR-10392-3p 1 0 0
chr9:136477345|136477520 hsa-miR-6838-5p 1 0 0
chr9:136477345|136477520 hsa-miR-548e-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:136477345|136477520
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MRGLGLARQVDCFWTNCPVVYFGAPVY
Nucleotide Sequence CTGCGGGGGCTGGGCCTTGCAAGACAGGTGGACTGCTTTTGGACGAACTGCCCAGTGGTGTACTTTGGAGCGCCTGTCTACTAA
CircID chr9:136477345|136477520
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MRKPCGGWALQDRWTAFGRTAQWCTLERLSTKSKWIRDRLQRASCRSHCCIIISPS
Nucleotide Sequence CTGAGAAAACCCTGCGGGGGCTGGGCCTTGCAAGACAGGTGGACTGCTTTTGGACGAACTGCCCAGTGGTGTACTTTGGAGCGCCTGTCTACTAAAAGCAAATGGATCCGTGACCGGCTGCAACGGGCAAGTTGTCGGAGCCACTGCTGCATTATTATTAGCCCGTCT
CircID chr9:136477345|136477520
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MLLDELPSGVLWSACLLKANGSVTGCNGQVVGATAALLLARL
Nucleotide Sequence CTGCTTTTGGACGAACTGCCCAGTGGTGTACTTTGGAGCGCCTGTCTACTAAAAGCAAATGGATCCGTGACCGGCTGCAACGGGCAAGTTGTCGGAGCCACTGCTGCATTATTATTAGCCCGTCTC
CircID chr9:136477345|136477520
ORF Type ORF4
Protein Length 43
Nucleotide Length 129
Protein Sequence MQPVTDPFAFSRQALQSTPLGSSSKSSPPVLQGPAPAGFSQHP
Nucleotide Sequence TTGCAGCCGGTCACGGATCCATTTGCTTTTAGTAGACAGGCGCTCCAAAGTACACCACTGGGCAGTTCGTCCAAAAGCAGTCCACCTGTCTTGCAAGGCCCAGCCCCCGCAGGGTTTTCTCAGCACCCC
CircID chr9:136477345|136477520
ORF Type ORF5
Protein Length 53
Nucleotide Length 159
Protein Sequence MQQWLRQLARCSRSRIHLLLVDRRSKVHHWAVRPKAVHLSCKAQPPQGFLSTP
Nucleotide Sequence ATGCAGCAGTGGCTCCGACAACTTGCCCGTTGCAGCCGGTCACGGATCCATTTGCTTTTAGTAGACAGGCGCTCCAAAGTACACCACTGGGCAGTTCGTCCAAAAGCAGTCCACCTGTCTTGCAAGGCCCAGCCCCCGCAGGGTTTTCTCAGCACCCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab