CircRNA Information

General Information
circRNA Basic Information
CircID chr9:136724887|136725102
Strand -
CircType exon
Host Gene ENSG00000233016.5;
Algorism CIRI2;
Sequence ACAGCAACACCCAGGCAGGGGCAGCGGCTGCCCCCATGCCAGCCTGCCCATCCCTGTAATGACAGCAGGGCAGGAGATGCAGCTGTGGCCCTGGGGGCAGGTGGGCTCTGAGGCTGCAAACACCCTGAGTGCCAGTGGTCCCAGAGGGGGTGAGGCCTCTATCTGTACCTTTATTCCAGCCAGCCTCCTGGCACAGGGCTGGGCCCACATCCTGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:136724887|136725102 hsa-miR-370-5p 0 0 1
chr9:136724887|136725102 hsa-miR-370-3p 0 0 1
chr9:136724887|136725102 hsa-miR-326 0 0 1
chr9:136724887|136725102 hsa-miR-510-5p 0 0 1
chr9:136724887|136725102 hsa-miR-510-3p 0 0 1
chr9:136724887|136725102 hsa-miR-609 0 0 1
chr9:136724887|136725102 hsa-miR-616-5p 0 0 1
chr9:136724887|136725102 hsa-miR-616-3p 0 0 1
chr9:136724887|136725102 hsa-miR-626 0 0 1
chr9:136724887|136725102 hsa-miR-661 0 1 1
chr9:136724887|136725102 hsa-miR-1301-5p 0 0 1
chr9:136724887|136725102 hsa-miR-1301-3p 0 0 1
chr9:136724887|136725102 hsa-miR-874-5p 0 0 1
chr9:136724887|136725102 hsa-miR-874-3p 0 0 1
chr9:136724887|136725102 hsa-miR-665 1 1 1
chr9:136724887|136725102 hsa-miR-1227-5p 0 0 1
chr9:136724887|136725102 hsa-miR-1227-3p 0 0 1
chr9:136724887|136725102 hsa-miR-548m 0 0 1
chr9:136724887|136725102 hsa-miR-1265 0 1 1
chr9:136724887|136725102 hsa-miR-1266-5p 0 0 1
chr9:136724887|136725102 hsa-miR-1266-3p 0 0 1
chr9:136724887|136725102 hsa-miR-296-5p 0 0 1
chr9:136724887|136725102 hsa-miR-486-3p 0 0 1
chr9:136724887|136725102 hsa-miR-485-5p 0 1 1
chr9:136724887|136725102 hsa-miR-299-3p 0 0 1
chr9:136724887|136725102 hsa-miR-146b-3p 0 0 1
chr9:136724887|136725102 hsa-miR-361-3p 0 0 1
chr9:136724887|136725102 hsa-miR-1224-3p 0 1 1
chr9:136724887|136725102 hsa-miR-324-3p 1 0 1
chr9:136724887|136725102 hsa-miR-330-5p 0 1 1
chr9:136724887|136725102 hsa-miR-1254 0 0 1
chr9:136724887|136725102 hsa-miR-1913 1 1 0
chr9:136724887|136725102 hsa-miR-1976 0 1 0
chr9:136724887|136725102 hsa-miR-4296 0 1 0
chr9:136724887|136725102 hsa-miR-4314 0 1 0
chr9:136724887|136725102 hsa-miR-4322 0 1 0
chr9:136724887|136725102 hsa-miR-4265 0 1 0
chr9:136724887|136725102 hsa-miR-3918 0 1 0
chr9:136724887|136725102 hsa-miR-4430 1 1 0
chr9:136724887|136725102 hsa-miR-4469 0 1 0
chr9:136724887|136725102 hsa-miR-4505 1 0 0
chr9:136724887|136725102 hsa-miR-5787 1 0 0
chr9:136724887|136725102 hsa-miR-210-5p 0 1 0
chr9:136724887|136725102 hsa-miR-6757-5p 0 1 0
chr9:136724887|136725102 hsa-miR-3622b-5p 0 1 0
chr9:136724887|136725102 hsa-miR-185-3p 1 0 0
chr9:136724887|136725102 hsa-miR-6882-3p 0 1 0
chr9:136724887|136725102 hsa-miR-4640-5p 1 0 0
chr9:136724887|136725102 hsa-miR-6743-3p 1 0 0
chr9:136724887|136725102 hsa-miR-1910-5p 0 1 0
chr9:136724887|136725102 hsa-miR-2276-5p 0 1 0
chr9:136724887|136725102 hsa-miR-1296-5p 1 1 0
chr9:136724887|136725102 hsa-miR-1914-5p 0 1 0
chr9:136724887|136725102 hsa-miR-3173-5p 0 1 0
chr9:136724887|136725102 hsa-miR-6505-5p 0 1 0
chr9:136724887|136725102 hsa-miR-6754-5p 1 0 0
chr9:136724887|136725102 hsa-miR-1915-3p 0 1 0
chr9:136724887|136725102 hsa-miR-6846-5p 1 1 0
chr9:136724887|136725102 hsa-miR-6848-5p 1 0 0
chr9:136724887|136725102 hsa-miR-6773-5p 0 1 0
chr9:136724887|136725102 hsa-miR-6762-5p 1 0 0
chr9:136724887|136725102 hsa-miR-6893-3p 0 1 0
chr9:136724887|136725102 hsa-miR-6784-3p 0 1 0
chr9:136724887|136725102 hsa-miR-6862-3p 0 1 0
chr9:136724887|136725102 hsa-miR-6810-3p 0 1 0
chr9:136724887|136725102 hsa-miR-6837-5p 0 1 0
chr9:136724887|136725102 hsa-miR-3085-3p 1 0 0
chr9:136724887|136725102 hsa-miR-4756-5p 1 0 0
chr9:136724887|136725102 hsa-miR-4691-5p 1 0 0
chr9:136724887|136725102 hsa-miR-619-5p 1 1 0
chr9:136724887|136725102 hsa-miR-6807-3p 0 1 0
chr9:136724887|136725102 hsa-miR-3064-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:136724887|136725102
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MPPCQPAHPCNDSRAGDAAVALGAGGL
Nucleotide Sequence CTGCCCCCATGCCAGCCTGCCCATCCCTGTAATGACAGCAGGGCAGGAGATGCAGCTGTGGCCCTGGGGGCAGGTGGGCTCTGA
CircID chr9:136724887|136725102
ORF Type ORF2
Protein Length 57
Nucleotide Length 171
Protein Sequence MPIPVMTAGQEMQLWPWGQVGSEAANTLSASGPRGGEASICTFIPASLLAQGWAHIL
Nucleotide Sequence CTGCCCATCCCTGTAATGACAGCAGGGCAGGAGATGCAGCTGTGGCCCTGGGGGCAGGTGGGCTCTGAGGCTGCAAACACCCTGAGTGCCAGTGGTCCCAGAGGGGGTGAGGCCTCTATCTGTACCTTTATTCCAGCCAGCCTCCTGGCACAGGGCTGGGCCCACATCCTG
CircID chr9:136724887|136725102
ORF Type ORF3
Protein Length 70
Nucleotide Length 210
Protein Sequence MWAQPCARRLAGIKVQIEASPPLGPLALRVFAASEPTCPQGHSCISCPAVITGMGRLAWGQPLPLPGCCC
Nucleotide Sequence ATGTGGGCCCAGCCCTGTGCCAGGAGGCTGGCTGGAATAAAGGTACAGATAGAGGCCTCACCCCCTCTGGGACCACTGGCACTCAGGGTGTTTGCAGCCTCAGAGCCCACCTGCCCCCAGGGCCACAGCTGCATCTCCTGCCCTGCTGTCATTACAGGGATGGGCAGGCTGGCATGGGGGCAGCCGCTGCCCCTGCCTGGGTGTTGCTGT
CircID chr9:136724887|136725102
ORF Type ORF4
Protein Length 39
Nucleotide Length 117
Protein Sequence MQPQSPPAPRATAASPALLSLQGWAGWHGGSRCPCLGVA
Nucleotide Sequence TTGCAGCCTCAGAGCCCACCTGCCCCCAGGGCCACAGCTGCATCTCCTGCCCTGCTGTCATTACAGGGATGGGCAGGCTGGCATGGGGGCAGCCGCTGCCCCTGCCTGGGTGTTGCT
CircID chr9:136724887|136725102
ORF Type ORF5
Protein Length 65
Nucleotide Length 195
Protein Sequence MCQEAGWNKGTDRGLTPSGTTGTQGVCSLRAHLPPGPQLHLLPCCHYRDGQAGMGAAAAPAWVLL
Nucleotide Sequence CTGTGCCAGGAGGCTGGCTGGAATAAAGGTACAGATAGAGGCCTCACCCCCTCTGGGACCACTGGCACTCAGGGTGTTTGCAGCCTCAGAGCCCACCTGCCCCCAGGGCCACAGCTGCATCTCCTGCCCTGCTGTCATTACAGGGATGGGCAGGCTGGCATGGGGGCAGCCGCTGCCCCTGCCTGGGTGTTGCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab