CircRNA Information

General Information
circRNA Basic Information
CircID chr9:136993598|136993820
Strand +
CircType exon
Host Gene ENSG00000148362.9;
Algorism CIRI2;
Sequence GCTTGTGCTGCACCTTCAGGTCTCATCGAAGTCCACGCCACCAGCTGGTTTCTTACTGGGAGGGAAGAGGGGTGTCACTATGGCACTATGGTGTGGAGAAAGGGGTGGGGTCCAGGATTGGACCCTGGGCGCAGGAAGGGGGCTGTGGGAGGGTACCTCTTGAACCCGGGGTTGATGAGCGACTCTCCTGGACACCGCCTCCTGACTCCAGGTCCAGGGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:136993598|136993820 hsa-miR-18a-5p 0 0 1
chr9:136993598|136993820 hsa-miR-18a-3p 0 0 1
chr9:136993598|136993820 hsa-miR-107 0 0 1
chr9:136993598|136993820 hsa-miR-198 0 0 1
chr9:136993598|136993820 hsa-miR-328-5p 0 0 1
chr9:136993598|136993820 hsa-miR-328-3p 0 0 1
chr9:136993598|136993820 hsa-miR-335-5p 0 0 1
chr9:136993598|136993820 hsa-miR-335-3p 0 0 1
chr9:136993598|136993820 hsa-miR-18b-5p 0 0 1
chr9:136993598|136993820 hsa-miR-18b-3p 0 0 1
chr9:136993598|136993820 hsa-miR-492 0 1 1
chr9:136993598|136993820 hsa-miR-493-5p 0 0 1
chr9:136993598|136993820 hsa-miR-493-3p 0 0 1
chr9:136993598|136993820 hsa-miR-519e-5p 0 0 1
chr9:136993598|136993820 hsa-miR-519e-3p 0 0 1
chr9:136993598|136993820 hsa-miR-619-5p 0 0 1
chr9:136993598|136993820 hsa-miR-619-3p 0 0 1
chr9:136993598|136993820 hsa-miR-631 0 0 1
chr9:136993598|136993820 hsa-miR-665 0 0 1
chr9:136993598|136993820 hsa-miR-1236-5p 0 0 1
chr9:136993598|136993820 hsa-miR-1236-3p 0 0 1
chr9:136993598|136993820 hsa-miR-663b 0 1 1
chr9:136993598|136993820 hsa-miR-1291 0 1 1
chr9:136993598|136993820 hsa-miR-769-5p 0 1 1
chr9:136993598|136993820 hsa-miR-532-3p 0 1 1
chr9:136993598|136993820 hsa-miR-1289 0 0 1
chr9:136993598|136993820 hsa-miR-1207-3p 0 0 1
chr9:136993598|136993820 hsa-miR-188-3p 0 0 1
chr9:136993598|136993820 hsa-miR-515-3p 0 0 1
chr9:136993598|136993820 hsa-miR-515-5p 0 0 1
chr9:136993598|136993820 hsa-miR-642 0 0 1
chr9:136993598|136993820 hsa-miR-103 0 0 1
chr9:136993598|136993820 hsa-miR-138 0 0 1
chr9:136993598|136993820 hsa-miR-371-3p 0 0 1
chr9:136993598|136993820 hsa-miR-422a 0 1 0
chr9:136993598|136993820 hsa-miR-378b 0 1 0
chr9:136993598|136993820 hsa-miR-378c 1 1 0
chr9:136993598|136993820 hsa-miR-4309 0 1 0
chr9:136993598|136993820 hsa-miR-3661 0 1 0
chr9:136993598|136993820 hsa-miR-3911 1 0 0
chr9:136993598|136993820 hsa-miR-3943 0 1 0
chr9:136993598|136993820 hsa-miR-378e 1 1 0
chr9:136993598|136993820 hsa-miR-378f 0 1 0
chr9:136993598|136993820 hsa-miR-378g 0 1 0
chr9:136993598|136993820 hsa-miR-378h 0 1 0
chr9:136993598|136993820 hsa-miR-378i 0 1 0
chr9:136993598|136993820 hsa-miR-4535 0 1 0
chr9:136993598|136993820 hsa-miR-8058 0 1 0
chr9:136993598|136993820 hsa-miR-138-5p 0 1 0
chr9:136993598|136993820 hsa-miR-6749-3p 1 0 0
chr9:136993598|136993820 hsa-miR-6765-5p 1 1 0
chr9:136993598|136993820 hsa-miR-6892-3p 0 1 0
chr9:136993598|136993820 hsa-miR-6089 1 0 0
chr9:136993598|136993820 hsa-miR-4695-5p 0 1 0
chr9:136993598|136993820 hsa-miR-877-3p 0 1 0
chr9:136993598|136993820 hsa-miR-615-3p 1 0 0
chr9:136993598|136993820 hsa-miR-7108-3p 0 1 0
chr9:136993598|136993820 hsa-miR-4786-3p 0 1 0
chr9:136993598|136993820 hsa-miR-3667-3p 0 1 0
chr9:136993598|136993820 hsa-miR-7111-3p 1 0 0
chr9:136993598|136993820 hsa-miR-3690 0 1 0
chr9:136993598|136993820 hsa-miR-4687-5p 0 1 0
chr9:136993598|136993820 hsa-miR-6730-3p 1 1 0
chr9:136993598|136993820 hsa-miR-4758-3p 1 0 0
chr9:136993598|136993820 hsa-miR-6887-3p 1 0 0
chr9:136993598|136993820 hsa-miR-1914-5p 0 1 0
chr9:136993598|136993820 hsa-miR-6802-3p 0 1 0
chr9:136993598|136993820 hsa-miR-1227-3p 1 0 0
chr9:136993598|136993820 hsa-miR-3162-3p 1 0 0
chr9:136993598|136993820 hsa-miR-6726-5p 1 0 0
chr9:136993598|136993820 hsa-miR-3127-3p 0 1 0
chr9:136993598|136993820 hsa-miR-4685-3p 0 1 0
chr9:136993598|136993820 hsa-miR-3198 0 1 0
chr9:136993598|136993820 hsa-miR-378a-3p 1 1 0
chr9:136993598|136993820 hsa-miR-6791-5p 0 1 0
chr9:136993598|136993820 hsa-miR-6756-3p 0 1 0
chr9:136993598|136993820 hsa-miR-5009-5p 0 1 0
chr9:136993598|136993820 hsa-miR-483-3p 0 1 0
chr9:136993598|136993820 hsa-miR-6769b-3p 0 1 0
chr9:136993598|136993820 hsa-miR-7114-3p 1 0 0
chr9:136993598|136993820 hsa-miR-6783-3p 0 1 0
chr9:136993598|136993820 hsa-miR-6764-5p 0 1 0
chr9:136993598|136993820 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:136993598|136993820
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MVWRKGWGPGLDPGRRKGAVGGYLLNPGLMSDSPGHRLLTPGPGP
Nucleotide Sequence ATGGTGTGGAGAAAGGGGTGGGGTCCAGGATTGGACCCTGGGCGCAGGAAGGGGGCTGTGGGAGGGTACCTCTTGAACCCGGGGTTGATGAGCGACTCTCCTGGACACCGCCTCCTGACTCCAGGTCCAGGGCCA
CircID chr9:136993598|136993820
ORF Type ORF2
Protein Length 51
Nucleotide Length 156
Protein Sequence MHLQVSSKSTPPAGFLLGGKRGVTMALWCGERGGVQDWTLGAGRGLWEGTS
Nucleotide Sequence CTGCACCTTCAGGTCTCATCGAAGTCCACGCCACCAGCTGGTTTCTTACTGGGAGGGAAGAGGGGTGTCACTATGGCACTATGGTGTGGAGAAAGGGGTGGGGTCCAGGATTGGACCCTGGGCGCAGGAAGGGGGCTGTGGGAGGGTACCTCTTGA
CircID chr9:136993598|136993820
ORF Type ORF3
Protein Length 73
Nucleotide Length 219
Protein Sequence LCCTFRSHRSPRHQLVSYWEGRGVSLWHYGVEKGVGSRIGPWAQEGGCGRVPLEPGVDERLSWTPPPDSRSRA
Nucleotide Sequence TTGTGCTGCACCTTCAGGTCTCATCGAAGTCCACGCCACCAGCTGGTTTCTTACTGGGAGGGAAGAGGGGTGTCACTATGGCACTATGGTGTGGAGAAAGGGGTGGGGTCCAGGATTGGACCCTGGGCGCAGGAAGGGGGCTGTGGGAGGGTACCTCTTGAACCCGGGGTTGATGAGCGACTCTCCTGGACACCGCCTCCTGACTCCAGGTCCAGGGCC
CircID chr9:136993598|136993820
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MDLESGGGVQESRSSTPGSRGTLPQPPSCAQGPILDPTPFSTP
Nucleotide Sequence CTGGACCTGGAGTCAGGAGGCGGTGTCCAGGAGAGTCGCTCATCAACCCCGGGTTCAAGAGGTACCCTCCCACAGCCCCCTTCCTGCGCCCAGGGTCCAATCCTGGACCCCACCCCTTTCTCCACACCATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab