CircRNA Information

General Information
circRNA Basic Information
CircID chr9:136993634|136993858
Strand +
CircType exon
Host Gene ENSG00000148362.9;
Algorism CIRI2;
Sequence TGCCTCTCCCCTCATAGGCGGACTCCCCGCGGGGCCACGCTTGTGCTGCACCTTCAGGTCTCATCGAAGTCCACGCCACCAGCTGGTTTCTTACTGGGAGGGAAGAGGGGTGTCACTATGGCACTATGGTGTGGAGAAAGGGGTGGGGTCCAGGATTGGACCCTGGGCGCAGGAAGGGGGCTGTGGGAGGGTACCTCTTGAACCCGGGGTTGATGAGCGACTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:136993634|136993858 hsa-miR-18a-5p 0 0 1
chr9:136993634|136993858 hsa-miR-18a-3p 0 0 1
chr9:136993634|136993858 hsa-miR-107 0 0 1
chr9:136993634|136993858 hsa-miR-335-5p 0 0 1
chr9:136993634|136993858 hsa-miR-335-3p 0 0 1
chr9:136993634|136993858 hsa-miR-18b-5p 0 0 1
chr9:136993634|136993858 hsa-miR-18b-3p 0 0 1
chr9:136993634|136993858 hsa-miR-493-5p 0 0 1
chr9:136993634|136993858 hsa-miR-493-3p 0 0 1
chr9:136993634|136993858 hsa-miR-519e-5p 0 0 1
chr9:136993634|136993858 hsa-miR-519e-3p 0 0 1
chr9:136993634|136993858 hsa-miR-1236-5p 0 0 1
chr9:136993634|136993858 hsa-miR-1236-3p 0 0 1
chr9:136993634|136993858 hsa-miR-663b 0 0 1
chr9:136993634|136993858 hsa-miR-1204 0 0 1
chr9:136993634|136993858 hsa-miR-769-5p 0 0 1
chr9:136993634|136993858 hsa-miR-532-3p 1 0 1
chr9:136993634|136993858 hsa-miR-1289 0 0 1
chr9:136993634|136993858 hsa-miR-423-5p 0 0 1
chr9:136993634|136993858 hsa-miR-1207-3p 0 0 1
chr9:136993634|136993858 hsa-miR-188-3p 0 0 1
chr9:136993634|136993858 hsa-miR-515-3p 0 0 1
chr9:136993634|136993858 hsa-miR-515-5p 0 0 1
chr9:136993634|136993858 hsa-miR-642 0 0 1
chr9:136993634|136993858 hsa-miR-103 0 0 1
chr9:136993634|136993858 hsa-miR-138 0 0 1
chr9:136993634|136993858 hsa-miR-371-3p 0 0 1
chr9:136993634|136993858 hsa-miR-661 1 0 0
chr9:136993634|136993858 hsa-miR-663a 1 0 0
chr9:136993634|136993858 hsa-miR-1470 1 0 0
chr9:136993634|136993858 hsa-miR-4270 1 0 0
chr9:136993634|136993858 hsa-miR-3911 1 0 0
chr9:136993634|136993858 hsa-miR-3943 0 1 0
chr9:136993634|136993858 hsa-miR-4491 1 0 0
chr9:136993634|136993858 hsa-miR-8058 0 1 0
chr9:136993634|136993858 hsa-miR-138-5p 0 1 0
chr9:136993634|136993858 hsa-miR-6749-3p 1 0 0
chr9:136993634|136993858 hsa-miR-6734-5p 0 1 0
chr9:136993634|136993858 hsa-miR-6892-3p 1 0 0
chr9:136993634|136993858 hsa-miR-150-5p 1 0 0
chr9:136993634|136993858 hsa-miR-6089 1 0 0
chr9:136993634|136993858 hsa-miR-877-3p 0 1 0
chr9:136993634|136993858 hsa-miR-4713-5p 1 0 0
chr9:136993634|136993858 hsa-miR-615-3p 1 0 0
chr9:136993634|136993858 hsa-miR-7108-3p 0 1 0
chr9:136993634|136993858 hsa-miR-4707-3p 1 0 0
chr9:136993634|136993858 hsa-miR-4786-3p 1 0 0
chr9:136993634|136993858 hsa-miR-1908-5p 1 0 0
chr9:136993634|136993858 hsa-miR-3667-3p 0 1 0
chr9:136993634|136993858 hsa-miR-7111-3p 1 0 0
chr9:136993634|136993858 hsa-miR-3648 1 0 0
chr9:136993634|136993858 hsa-miR-4667-3p 1 0 0
chr9:136993634|136993858 hsa-miR-3690 0 1 0
chr9:136993634|136993858 hsa-miR-4687-5p 0 1 0
chr9:136993634|136993858 hsa-miR-6730-3p 1 0 0
chr9:136993634|136993858 hsa-miR-4758-3p 1 0 0
chr9:136993634|136993858 hsa-miR-6887-3p 1 0 0
chr9:136993634|136993858 hsa-miR-1910-5p 1 0 0
chr9:136993634|136993858 hsa-miR-1914-5p 1 0 0
chr9:136993634|136993858 hsa-miR-5088-3p 1 0 0
chr9:136993634|136993858 hsa-miR-6802-3p 0 1 0
chr9:136993634|136993858 hsa-miR-1227-3p 1 0 0
chr9:136993634|136993858 hsa-miR-4433b-5p 1 0 0
chr9:136993634|136993858 hsa-miR-6734-3p 1 0 0
chr9:136993634|136993858 hsa-miR-3162-3p 1 0 0
chr9:136993634|136993858 hsa-miR-1343-5p 1 0 0
chr9:136993634|136993858 hsa-miR-6752-5p 1 0 0
chr9:136993634|136993858 hsa-miR-3127-3p 0 1 0
chr9:136993634|136993858 hsa-miR-4685-3p 0 1 0
chr9:136993634|136993858 hsa-miR-6777-5p 0 1 0
chr9:136993634|136993858 hsa-miR-6889-5p 0 1 0
chr9:136993634|136993858 hsa-miR-324-3p 1 0 0
chr9:136993634|136993858 hsa-miR-6724-5p 1 0 0
chr9:136993634|136993858 hsa-miR-6756-3p 1 0 0
chr9:136993634|136993858 hsa-miR-6862-3p 1 0 0
chr9:136993634|136993858 hsa-miR-5009-5p 0 1 0
chr9:136993634|136993858 hsa-miR-483-3p 0 1 0
chr9:136993634|136993858 hsa-miR-6769b-3p 0 1 0
chr9:136993634|136993858 hsa-miR-7114-3p 1 0 0
chr9:136993634|136993858 hsa-miR-6783-3p 0 1 0
chr9:136993634|136993858 hsa-miR-4691-5p 1 0 0
chr9:136993634|136993858 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:136993634|136993858
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence MHLQVSSKSTPPAGFLLGGKRGVTMALWCGERGGVQDWTLGAGRGLWEGTS
Nucleotide Sequence CTGCACCTTCAGGTCTCATCGAAGTCCACGCCACCAGCTGGTTTCTTACTGGGAGGGAAGAGGGGTGTCACTATGGCACTATGGTGTGGAGAAAGGGGTGGGGTCCAGGATTGGACCCTGGGCGCAGGAAGGGGGCTGTGGGAGGGTACCTCTTGA
CircID chr9:136993634|136993858
ORF Type ORF2
Protein Length 61
Nucleotide Length 183
Protein Sequence MCCTFRSHRSPRHQLVSYWEGRGVSLWHYGVEKGVGSRIGPWAQEGGCGRVPLEPGVDERL
Nucleotide Sequence TTGTGCTGCACCTTCAGGTCTCATCGAAGTCCACGCCACCAGCTGGTTTCTTACTGGGAGGGAAGAGGGGTGTCACTATGGCACTATGGTGTGGAGAAAGGGGTGGGGTCCAGGATTGGACCCTGGGCGCAGGAAGGGGGCTGTGGGAGGGTACCTCTTGAACCCGGGGTTGATGAGCGACTC
CircID chr9:136993634|136993858
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MVWRKGWGPGLDPGRRKGAVGGYLLNPGLMSDS
Nucleotide Sequence ATGGTGTGGAGAAAGGGGTGGGGTCCAGGATTGGACCCTGGGCGCAGGAAGGGGGCTGTGGGAGGGTACCTCTTGAACCCGGGGTTGATGAGCGACTCT
CircID chr9:136993634|136993858
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MVAWTSMRPEGAAQAWPRGESAYEGRG
Nucleotide Sequence CTGGTGGCGTGGACTTCGATGAGACCTGAAGGTGCAGCACAAGCGTGGCCCCGCGGGGAGTCCGCCTATGAGGGGAGAGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab