CircRNA Information

General Information
circRNA Basic Information
CircID chr9:137017787|137018004
Strand -
CircType exon
Host Gene ENSG00000107331.15;
Algorism CIRI2;
Sequence CTCCTTGAGCCGGTGCTCCTTCTCCGCCACGATGTGCTGGATGGTCATGGCCACGGAGTAGACCCAGGAGATCACCATGCACAGCGGCATCATGTGCTCAATGACAAACAGGAAGCTGCGGGGAGGCCGCGCTCAGGCGCCACTCAGCCCCAGCCCCAGCCCCAGCCCCGGGCGCCCAGCACTCACTCATCGCGTGTGTAGCAGGGGTAGGGGAACAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:137017787|137018004 hsa-miR-221-5p 0 0 1
chr9:137017787|137018004 hsa-miR-221-3p 0 0 1
chr9:137017787|137018004 hsa-miR-222-5p 0 0 1
chr9:137017787|137018004 hsa-miR-222-3p 0 0 1
chr9:137017787|137018004 hsa-miR-591 0 0 1
chr9:137017787|137018004 hsa-miR-603 0 0 1
chr9:137017787|137018004 hsa-miR-616-5p 0 0 1
chr9:137017787|137018004 hsa-miR-616-3p 0 0 1
chr9:137017787|137018004 hsa-miR-934 0 0 1
chr9:137017787|137018004 hsa-miR-1204 0 1 1
chr9:137017787|137018004 hsa-miR-1322 0 1 1
chr9:137017787|137018004 hsa-miR-512-3p 0 0 1
chr9:137017787|137018004 hsa-miR-193a-5p 0 0 1
chr9:137017787|137018004 hsa-miR-339-3p 0 0 1
chr9:137017787|137018004 hsa-miR-566 0 0 1
chr9:137017787|137018004 hsa-miR-338-3p 0 0 1
chr9:137017787|137018004 hsa-miR-516a-3p 0 0 1
chr9:137017787|137018004 hsa-miR-362-3p 0 0 1
chr9:137017787|137018004 hsa-miR-329 0 0 1
chr9:137017787|137018004 hsa-miR-602 1 0 0
chr9:137017787|137018004 hsa-miR-661 1 1 0
chr9:137017787|137018004 hsa-miR-762 1 1 0
chr9:137017787|137018004 hsa-miR-1268b 1 0 0
chr9:137017787|137018004 hsa-miR-4479 1 1 0
chr9:137017787|137018004 hsa-miR-4492 1 1 0
chr9:137017787|137018004 hsa-miR-4505 0 1 0
chr9:137017787|137018004 hsa-miR-4507 1 0 0
chr9:137017787|137018004 hsa-miR-4508 1 1 0
chr9:137017787|137018004 hsa-miR-1587 1 0 0
chr9:137017787|137018004 hsa-miR-4656 1 1 0
chr9:137017787|137018004 hsa-miR-4706 1 0 0
chr9:137017787|137018004 hsa-miR-5787 1 1 0
chr9:137017787|137018004 hsa-miR-6078 0 1 0
chr9:137017787|137018004 hsa-miR-6085 1 1 0
chr9:137017787|137018004 hsa-miR-6127 1 0 0
chr9:137017787|137018004 hsa-miR-8055 0 1 0
chr9:137017787|137018004 hsa-miR-8077 0 1 0
chr9:137017787|137018004 hsa-miR-8089 1 0 0
chr9:137017787|137018004 hsa-miR-132-5p 0 1 0
chr9:137017787|137018004 hsa-miR-25-5p 0 1 0
chr9:137017787|137018004 hsa-miR-6880-5p 1 0 0
chr9:137017787|137018004 hsa-miR-6727-5p 1 1 0
chr9:137017787|137018004 hsa-miR-5589-5p 0 1 0
chr9:137017787|137018004 hsa-miR-185-3p 0 1 0
chr9:137017787|137018004 hsa-miR-6770-5p 0 1 0
chr9:137017787|137018004 hsa-miR-6821-5p 1 0 0
chr9:137017787|137018004 hsa-miR-3944-3p 1 0 0
chr9:137017787|137018004 hsa-miR-6784-5p 0 1 0
chr9:137017787|137018004 hsa-miR-1908-5p 1 0 0
chr9:137017787|137018004 hsa-miR-6749-5p 1 1 0
chr9:137017787|137018004 hsa-miR-6778-3p 0 1 0
chr9:137017787|137018004 hsa-miR-3605-3p 0 1 0
chr9:137017787|137018004 hsa-miR-6789-3p 0 1 0
chr9:137017787|137018004 hsa-miR-3162-3p 0 1 0
chr9:137017787|137018004 hsa-miR-4763-3p 1 1 0
chr9:137017787|137018004 hsa-miR-6787-5p 1 0 0
chr9:137017787|137018004 hsa-miR-6816-5p 1 0 0
chr9:137017787|137018004 hsa-miR-6775-5p 1 0 0
chr9:137017787|137018004 hsa-miR-5001-5p 1 1 0
chr9:137017787|137018004 hsa-miR-6756-5p 1 1 0
chr9:137017787|137018004 hsa-miR-6803-5p 1 0 0
chr9:137017787|137018004 hsa-miR-6813-5p 1 0 0
chr9:137017787|137018004 hsa-miR-11181-3p 1 0 0
chr9:137017787|137018004 hsa-miR-6751-5p 1 0 0
chr9:137017787|137018004 hsa-miR-3620-5p 1 1 0
chr9:137017787|137018004 hsa-miR-5196-5p 1 0 0
chr9:137017787|137018004 hsa-miR-10396b-5p 1 0 0
chr9:137017787|137018004 hsa-miR-4745-5p 1 0 0
chr9:137017787|137018004 hsa-miR-6846-5p 1 0 0
chr9:137017787|137018004 hsa-miR-6848-5p 1 0 0
chr9:137017787|137018004 hsa-miR-6858-5p 1 0 0
chr9:137017787|137018004 hsa-miR-1238-5p 0 1 0
chr9:137017787|137018004 hsa-miR-4758-5p 1 1 0
chr9:137017787|137018004 hsa-miR-3940-5p 1 0 0
chr9:137017787|137018004 hsa-miR-6801-3p 0 1 0
chr9:137017787|137018004 hsa-miR-6783-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:137017787|137018004
ORF Type ORF1
Protein Length 54
Nucleotide Length 165
Protein Sequence MDGHGHGVDPGDHHAQRHHVLNDKQEAAGRPRSGATQPQPQPQPRAPSTHSSRV
Nucleotide Sequence CTGGATGGTCATGGCCACGGAGTAGACCCAGGAGATCACCATGCACAGCGGCATCATGTGCTCAATGACAAACAGGAAGCTGCGGGGAGGCCGCGCTCAGGCGCCACTCAGCCCCAGCCCCAGCCCCAGCCCCGGGCGCCCAGCACTCACTCATCGCGTGTGTAG
CircID chr9:137017787|137018004
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MHSGIMCSMTNRKLRGGRAQAPLSPSPSPSPGRPALTHRVCSRGRGT
Nucleotide Sequence ATGCACAGCGGCATCATGTGCTCAATGACAAACAGGAAGCTGCGGGGAGGCCGCGCTCAGGCGCCACTCAGCCCCAGCCCCAGCCCCAGCCCCGGGCGCCCAGCACTCACTCATCGCGTGTGTAGCAGGGGTAGGGGAACA
CircID chr9:137017787|137018004
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MSECWAPGAGAGAGAEWRLSAASPQLPVCH
Nucleotide Sequence ATGAGTGAGTGCTGGGCGCCCGGGGCTGGGGCTGGGGCTGGGGCTGAGTGGCGCCTGAGCGCGGCCTCCCCGCAGCTTCCTGTTTGTCATTGA
CircID chr9:137017787|137018004
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MFVIEHMMPLCMVISWVYSVAMTIQHIVAEKEHRLKE
Nucleotide Sequence CTGTTTGTCATTGAGCACATGATGCCGCTGTGCATGGTGATCTCCTGGGTCTACTCCGTGGCCATGACCATCCAGCACATCGTGGCGGAGAAGGAGCACCGGCTCAAGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab