CircRNA Information

General Information
circRNA Basic Information
CircID chr9:137111970|137112192
Strand +
CircType exon
Host Gene ENSG00000176978.12;
Algorism CIRI2;
Sequence GACATCTACCGGCTCTACCACAGCTGTGCTGACCCCACTGGCTGCGGCACCGGCCCCGACGCCAGGGCCTGGGACTACCAGGTGTGGGGGTGTGGGTGGCCTGGAACCACTCGGGGGCAAGGGTGGGCGTGGGCTGGCCTGACTCAGGCTGGGGCACCTGCAGGCCTGCACCGAGATCAACCTGACCTTCGCCAGCAACAATGTGACCGATATGTTCCCGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:137111970|137112192 hsa-miR-23a-5p 0 0 1
chr9:137111970|137112192 hsa-miR-23a-3p 0 0 1
chr9:137111970|137112192 hsa-miR-23b-5p 0 0 1
chr9:137111970|137112192 hsa-miR-23b-3p 0 0 1
chr9:137111970|137112192 hsa-miR-379-5p 0 0 1
chr9:137111970|137112192 hsa-miR-379-3p 0 0 1
chr9:137111970|137112192 hsa-miR-493-5p 0 0 1
chr9:137111970|137112192 hsa-miR-493-3p 0 0 1
chr9:137111970|137112192 hsa-miR-575 -7 1 1
chr9:137111970|137112192 hsa-miR-657 -7 0 1
chr9:137111970|137112192 hsa-miR-1228-5p 0 0 1
chr9:137111970|137112192 hsa-miR-1228-3p 0 0 1
chr9:137111970|137112192 hsa-miR-1205 -6 0 1
chr9:137111970|137112192 hsa-miR-1291 -3 0 1
chr9:137111970|137112192 hsa-miR-1250-5p 0 0 1
chr9:137111970|137112192 hsa-miR-1250-3p 0 0 1
chr9:137111970|137112192 hsa-miR-140-5p -6 0 1
chr9:137111970|137112192 hsa-miR-615-5p -7 0 1
chr9:137111970|137112192 hsa-miR-576-3p -2 0 1
chr9:137111970|137112192 hsa-miR-661 -17 1 0
chr9:137111970|137112192 hsa-miR-762 -17 1 0
chr9:137111970|137112192 hsa-miR-3907 -21 1 0
chr9:137111970|137112192 hsa-miR-4451 0 1 0
chr9:137111970|137112192 hsa-miR-4466 -19 1 0
chr9:137111970|137112192 hsa-miR-4641 -20 1 0
chr9:137111970|137112192 hsa-miR-5702 -1 1 0
chr9:137111970|137112192 hsa-miR-1972 -5 1 0
chr9:137111970|137112192 hsa-miR-218-1-3p -7 1 0
chr9:137111970|137112192 hsa-miR-6727-5p -15 1 0
chr9:137111970|137112192 hsa-miR-6849-3p -12 1 0
chr9:137111970|137112192 hsa-miR-6742-5p -18 1 0
chr9:137111970|137112192 hsa-miR-6796-5p -18 1 0
chr9:137111970|137112192 hsa-miR-6765-3p -9 1 0
chr9:137111970|137112192 hsa-miR-6858-3p -16 1 0
chr9:137111970|137112192 hsa-miR-937-5p -5 1 0
chr9:137111970|137112192 hsa-miR-4717-5p -6 1 0
chr9:137111970|137112192 hsa-miR-6775-3p 0 1 0
chr9:137111970|137112192 hsa-miR-7114-3p 0 1 0
chr9:137111970|137112192 hsa-miR-10394-5p -13 1 0
chr9:137111970|137112192 hsa-miR-4676-5p -13 1 0
chr9:137111970|137112192 hsa-miR-6811-5p -14 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:137111970|137112192
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MTQAGAPAGLHRDQPDLRQQQCDRYVPG
Nucleotide Sequence CTGACTCAGGCTGGGGCACCTGCAGGCCTGCACCGAGATCAACCTGACCTTCGCCAGCAACAATGTGACCGATATGTTCCCGGA
CircID chr9:137111970|137112192
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MTPLAAAPAPTPGPGTTRCGGVGGLEPLGGKGGRGLA
Nucleotide Sequence CTGACCCCACTGGCTGCGGCACCGGCCCCGACGCCAGGGCCTGGGACTACCAGGTGTGGGGGTGTGGGTGGCCTGGAACCACTCGGGGGCAAGGGTGGGCGTGGGCTGGCCTGA
CircID chr9:137111970|137112192
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MGHLQACTEINLTFASNNVTDMFPD
Nucleotide Sequence CTGGGGCACCTGCAGGCCTGCACCGAGATCAACCTGACCTTCGCCAGCAACAATGTGACCGATATGTTCCCGGAC
CircID chr9:137111970|137112192
ORF Type ORF4
Protein Length 47
Nucleotide Length 144
Protein Sequence MRHRPRRQGLGLPGVGVWVAWNHSGARVGVGWPDSGWGTCRPAPRST
Nucleotide Sequence CTGCGGCACCGGCCCCGACGCCAGGGCCTGGGACTACCAGGTGTGGGGGTGTGGGTGGCCTGGAACCACTCGGGGGCAAGGGTGGGCGTGGGCTGGCCTGACTCAGGCTGGGGCACCTGCAGGCCTGCACCGAGATCAACCTGA
CircID chr9:137111970|137112192
ORF Type ORF5
Protein Length 54
Nucleotide Length 162
Protein Sequence MQVPQPESGQPTPTLAPEWFQATHTPTPGSPRPWRRGRCRSQWGQHSCGRAGRC
Nucleotide Sequence CTGCAGGTGCCCCAGCCTGAGTCAGGCCAGCCCACGCCCACCCTTGCCCCCGAGTGGTTCCAGGCCACCCACACCCCCACACCTGGTAGTCCCAGGCCCTGGCGTCGGGGCCGGTGCCGCAGCCAGTGGGGTCAGCACAGCTGTGGTAGAGCCGGTAGATGT
CircID chr9:137111970|137112192
ORF Type ORF6
Protein Length 67
Nucleotide Length 201
Protein Sequence MLLAKVRLISVQACRCPSLSQASPRPPLPPSGSRPPTPPHLVVPGPGVGAGAAASGVSTAVVEPVDV
Nucleotide Sequence TTGTTGCTGGCGAAGGTCAGGTTGATCTCGGTGCAGGCCTGCAGGTGCCCCAGCCTGAGTCAGGCCAGCCCACGCCCACCCTTGCCCCCGAGTGGTTCCAGGCCACCCACACCCCCACACCTGGTAGTCCCAGGCCCTGGCGTCGGGGCCGGTGCCGCAGCCAGTGGGGTCAGCACAGCTGTGGTAGAGCCGGTAGATGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab