CircRNA Information

General Information
circRNA Basic Information
CircID chr9:137112761|137113088
Strand +
CircType exon
Host Gene ENSG00000176978.12;
Algorism CIRI2;
Sequence CTGCCAGCCGCTGTCAGACGAGAAGGACCTGACCCAGCTCTTCATGTTCGCCCGGAATGCCTTCACCGTGCTGGCCATGATGGACTACCCCTACCCCACTGACTTCCTGGGTCCCCTCCCTGCCAACCCCGTCAAGGTGAGGCGCCGCCTCCCAGGGCGCAGGGAGAGGCCGGCTGGAGTGTCCCGAGGCTGGTGGTCAGCGGCCTGACCCTCATCCTGGGAGCCAGGGAGGCGGAGCTGGTGGAGGGGACCCCGCTGAGTCGCCGCTGCCCCTGCACTCCAGGTGGGCTGTGATCGGCTGCTGAGTGAGGCCCAGAGGATCACGGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:137112761|137113088 hsa-miR-214-5p 0 0 1
chr9:137112761|137113088 hsa-miR-214-3p 0 0 1
chr9:137112761|137113088 hsa-miR-122-5p 0 0 1
chr9:137112761|137113088 hsa-miR-122-3p 0 0 1
chr9:137112761|137113088 hsa-miR-149-5p 0 0 1
chr9:137112761|137113088 hsa-miR-149-3p 0 0 1
chr9:137112761|137113088 hsa-miR-326 0 1 1
chr9:137112761|137113088 hsa-miR-612 0 0 1
chr9:137112761|137113088 hsa-miR-619-5p 0 0 1
chr9:137112761|137113088 hsa-miR-619-3p 0 0 1
chr9:137112761|137113088 hsa-miR-766-5p 0 0 1
chr9:137112761|137113088 hsa-miR-766-3p 0 0 1
chr9:137112761|137113088 hsa-miR-922 0 0 1
chr9:137112761|137113088 hsa-miR-1226-5p 0 0 1
chr9:137112761|137113088 hsa-miR-1226-3p 0 0 1
chr9:137112761|137113088 hsa-miR-1237-5p 0 0 1
chr9:137112761|137113088 hsa-miR-1237-3p 0 0 1
chr9:137112761|137113088 hsa-miR-1248 0 0 1
chr9:137112761|137113088 hsa-miR-1255a 0 0 1
chr9:137112761|137113088 hsa-miR-1281 0 0 1
chr9:137112761|137113088 hsa-miR-1321 0 0 1
chr9:137112761|137113088 hsa-miR-512-5p 0 1 1
chr9:137112761|137113088 hsa-miR-486-3p 0 0 1
chr9:137112761|137113088 hsa-miR-615-5p 0 1 1
chr9:137112761|137113088 hsa-miR-885-3p 0 1 1
chr9:137112761|137113088 hsa-miR-566 0 0 1
chr9:137112761|137113088 hsa-miR-508-5p 0 1 1
chr9:137112761|137113088 hsa-miR-1224-3p 0 0 1
chr9:137112761|137113088 hsa-miR-1207-5p 1 1 1
chr9:137112761|137113088 hsa-miR-330-5p 0 1 1
chr9:137112761|137113088 hsa-miR-1255b 0 0 1
chr9:137112761|137113088 hsa-miR-1285 0 0 1
chr9:137112761|137113088 hsa-miR-923 0 0 1
chr9:137112761|137113088 hsa-miR-608 1 0 0
chr9:137112761|137113088 hsa-miR-650 1 0 0
chr9:137112761|137113088 hsa-miR-663a 1 0 0
chr9:137112761|137113088 hsa-miR-762 1 0 0
chr9:137112761|137113088 hsa-miR-711 1 1 0
chr9:137112761|137113088 hsa-miR-4270 1 1 0
chr9:137112761|137113088 hsa-miR-4281 1 0 0
chr9:137112761|137113088 hsa-miR-3909 1 0 0
chr9:137112761|137113088 hsa-miR-4441 0 1 0
chr9:137112761|137113088 hsa-miR-4467 0 1 0
chr9:137112761|137113088 hsa-miR-4498 1 0 0
chr9:137112761|137113088 hsa-miR-2392 0 1 0
chr9:137112761|137113088 hsa-miR-4512 1 0 0
chr9:137112761|137113088 hsa-miR-4526 0 1 0
chr9:137112761|137113088 hsa-miR-1587 1 0 0
chr9:137112761|137113088 hsa-miR-3960 1 0 0
chr9:137112761|137113088 hsa-miR-4651 1 0 0
chr9:137112761|137113088 hsa-miR-4688 0 1 0
chr9:137112761|137113088 hsa-miR-4706 1 0 0
chr9:137112761|137113088 hsa-miR-4710 1 0 0
chr9:137112761|137113088 hsa-miR-4739 1 1 0
chr9:137112761|137113088 hsa-miR-5787 1 0 0
chr9:137112761|137113088 hsa-miR-6075 1 0 0
chr9:137112761|137113088 hsa-miR-6126 0 1 0
chr9:137112761|137113088 hsa-miR-6127 1 0 0
chr9:137112761|137113088 hsa-miR-7150 0 1 0
chr9:137112761|137113088 hsa-miR-8060 0 1 0
chr9:137112761|137113088 hsa-miR-9900 0 1 0
chr9:137112761|137113088 hsa-miR-6840-3p 1 1 0
chr9:137112761|137113088 hsa-miR-504-3p 1 1 0
chr9:137112761|137113088 hsa-miR-4726-3p 1 0 0
chr9:137112761|137113088 hsa-miR-6765-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6720-5p 0 1 0
chr9:137112761|137113088 hsa-miR-3192-5p 0 1 0
chr9:137112761|137113088 hsa-miR-6757-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6880-5p 1 0 0
chr9:137112761|137113088 hsa-miR-4695-5p 1 0 0
chr9:137112761|137113088 hsa-miR-505-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6890-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6721-5p 1 0 0
chr9:137112761|137113088 hsa-miR-1178-5p 0 1 0
chr9:137112761|137113088 hsa-miR-6849-3p 0 1 0
chr9:137112761|137113088 hsa-miR-6742-5p 1 1 0
chr9:137112761|137113088 hsa-miR-6868-3p 0 1 0
chr9:137112761|137113088 hsa-miR-6782-5p 1 0 0
chr9:137112761|137113088 hsa-miR-30b-3p 0 1 0
chr9:137112761|137113088 hsa-miR-6786-5p 1 0 0
chr9:137112761|137113088 hsa-miR-1229-5p 1 0 0
chr9:137112761|137113088 hsa-miR-4640-5p 1 0 0
chr9:137112761|137113088 hsa-miR-7113-3p 0 1 0
chr9:137112761|137113088 hsa-miR-92b-5p 1 0 0
chr9:137112761|137113088 hsa-miR-4713-3p 1 0 0
chr9:137112761|137113088 hsa-miR-6878-3p 0 1 0
chr9:137112761|137113088 hsa-miR-2681-3p 0 1 0
chr9:137112761|137113088 hsa-miR-4638-3p 1 0 0
chr9:137112761|137113088 hsa-miR-6736-3p 0 1 0
chr9:137112761|137113088 hsa-miR-937-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6824-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6789-5p 1 0 0
chr9:137112761|137113088 hsa-miR-3162-5p 1 0 0
chr9:137112761|137113088 hsa-miR-194-3p 0 1 0
chr9:137112761|137113088 hsa-miR-6825-3p 0 1 0
chr9:137112761|137113088 hsa-miR-3191-3p 1 0 0
chr9:137112761|137113088 hsa-miR-6887-3p 0 1 0
chr9:137112761|137113088 hsa-miR-6778-3p 0 1 0
chr9:137112761|137113088 hsa-miR-4750-5p 1 0 0
chr9:137112761|137113088 hsa-miR-7113-5p 1 1 0
chr9:137112761|137113088 hsa-miR-3144-5p 0 1 0
chr9:137112761|137113088 hsa-miR-4670-3p 1 0 0
chr9:137112761|137113088 hsa-miR-10400-5p 1 1 0
chr9:137112761|137113088 hsa-miR-4763-3p 1 1 0
chr9:137112761|137113088 hsa-miR-6787-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6816-5p 1 0 0
chr9:137112761|137113088 hsa-miR-1343-5p 1 0 0
chr9:137112761|137113088 hsa-miR-5001-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6743-5p 0 1 0
chr9:137112761|137113088 hsa-miR-6754-5p 1 1 0
chr9:137112761|137113088 hsa-miR-6756-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6769a-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6803-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6851-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6722-3p 1 1 0
chr9:137112761|137113088 hsa-miR-6751-5p 0 1 0
chr9:137112761|137113088 hsa-miR-6779-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6808-5p 1 1 0
chr9:137112761|137113088 hsa-miR-6875-5p 1 0 0
chr9:137112761|137113088 hsa-miR-7111-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6754-3p 0 1 0
chr9:137112761|137113088 hsa-miR-3620-5p 1 0 0
chr9:137112761|137113088 hsa-miR-4728-5p 0 1 0
chr9:137112761|137113088 hsa-miR-5196-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6780b-5p 1 0 0
chr9:137112761|137113088 hsa-miR-10396b-5p 1 0 0
chr9:137112761|137113088 hsa-miR-1909-3p 0 1 0
chr9:137112761|137113088 hsa-miR-328-5p 1 0 0
chr9:137112761|137113088 hsa-miR-4649-5p 1 0 0
chr9:137112761|137113088 hsa-miR-4725-3p 1 0 0
chr9:137112761|137113088 hsa-miR-4745-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6729-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6777-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6795-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6858-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6889-5p 1 0 0
chr9:137112761|137113088 hsa-miR-4758-5p 1 0 0
chr9:137112761|137113088 hsa-miR-5008-3p 1 0 0
chr9:137112761|137113088 hsa-miR-6855-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6791-3p 0 1 0
chr9:137112761|137113088 hsa-miR-6724-5p 1 0 0
chr9:137112761|137113088 hsa-miR-6791-5p 0 1 0
chr9:137112761|137113088 hsa-miR-6792-3p 0 1 0
chr9:137112761|137113088 hsa-miR-320a-3p 1 0 0
chr9:137112761|137113088 hsa-miR-320b 1 0 0
chr9:137112761|137113088 hsa-miR-10392-3p 1 0 0
chr9:137112761|137113088 hsa-miR-4723-3p 0 1 0
chr9:137112761|137113088 hsa-miR-4756-5p 0 1 0
chr9:137112761|137113088 hsa-miR-6744-3p 0 1 0
chr9:137112761|137113088 hsa-miR-4690-3p 0 1 0
chr9:137112761|137113088 hsa-miR-4781-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:137112761|137113088
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence LPAAVRREGPDPALHVRPECLHRAGHDGLPLPH
Nucleotide Sequence CTGCCAGCCGCTGTCAGACGAGAAGGACCTGACCCAGCTCTTCATGTTCGCCCGGAATGCCTTCACCGTGCTGGCCATGATGGACTACCCCTACCCCACTGA
CircID chr9:137112761|137113088
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MVVSGLTLILGAREAELVEGTPLSRRCPCTPGGL
Nucleotide Sequence CTGGTGGTCAGCGGCCTGACCCTCATCCTGGGAGCCAGGGAGGCGGAGCTGGTGGAGGGGACCCCGCTGAGTCGCCGCTGCCCCTGCACTCCAGGTGGGCTGTGA
CircID chr9:137112761|137113088
ORF Type ORF3
Protein Length 65
Nucleotide Length 198
Protein Sequence MSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKVRRRLPGRRERPAGVSRGWWSAA
Nucleotide Sequence CTGTCAGACGAGAAGGACCTGACCCAGCTCTTCATGTTCGCCCGGAATGCCTTCACCGTGCTGGCCATGATGGACTACCCCTACCCCACTGACTTCCTGGGTCCCCTCCCTGCCAACCCCGTCAAGGTGAGGCGCCGCCTCCCAGGGCGCAGGGAGAGGCCGGCTGGAGTGTCCCGAGGCTGGTGGTCAGCGGCCTGA
CircID chr9:137112761|137113088
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MECPEAGGQRPDPHPGSQGGGAGGGDPAESPLPLHSRWAVIGC
Nucleotide Sequence CTGGAGTGTCCCGAGGCTGGTGGTCAGCGGCCTGACCCTCATCCTGGGAGCCAGGGAGGCGGAGCTGGTGGAGGGGACCCCGCTGAGTCGCCGCTGCCCCTGCACTCCAGGTGGGCTGTGATCGGCTGCTGA
CircID chr9:137112761|137113088
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MGLTQQPITAHLECRGSGDSAGSPPPAPPPWLPG
Nucleotide Sequence CTGGGCCTCACTCAGCAGCCGATCACAGCCCACCTGGAGTGCAGGGGCAGCGGCGACTCAGCGGGGTCCCCTCCACCAGCTCCGCCTCCCTGGCTCCCAGGATGA
CircID chr9:137112761|137113088
ORF Type ORF6
Protein Length 26
Nucleotide Length 78
Protein Sequence MASTVKAFRANMKSWVRSFSSDSGWQ
Nucleotide Sequence ATGGCCAGCACGGTGAAGGCATTCCGGGCGAACATGAAGAGCTGGGTCAGGTCCTTCTCGTCTGACAGCGGCTGGCAG
CircID chr9:137112761|137113088
ORF Type ORF7
Protein Length 31
Nucleotide Length 96
Protein Sequence MAPRMRVRPLTTSLGTLQPASPCALGGGASP
Nucleotide Sequence CTGGCTCCCAGGATGAGGGTCAGGCCGCTGACCACCAGCCTCGGGACACTCCAGCCGGCCTCTCCCTGCGCCCTGGGAGGCGGCGCCTCACCTTGA
CircID chr9:137112761|137113088
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MSDEKDLTQLFMFARNAFTVLAMMDYPYPTDFLGPLPANPVKTG
Nucleotide Sequence CTGTCAGACGAGAAGGACCTGACCCAGCTCTTCATGTTCGCCCGGAATGCCTTCACCGTGCTGGCCATGATGGACTACCCCTACCCCACTGACTTCCTGGGTCCCCTCCCTGCCAACCCCGTCAAGACGGGG
CircID chr9:137112761|137113088
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MASTVKAFRANMKSWVRSFSSDSGWQ
Nucleotide Sequence ATGGCCAGCACGGTGAAGGCATTCCGGGCGAACATGAAGAGCTGGGTCAGGTCCTTCTCGTCTGACAGCGGCTGGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab