CircRNA Information

General Information
circRNA Basic Information
CircID chr9:137242544|137242722
Strand +
CircType exon
Host Gene ENSG00000188229.5;
Algorism CIRI2;
Sequence ACTAAACGTGTTCATGATCCTGTCTGGGTACTCCTCCCGGATCTTGCTGATGAGGAGGGTACCCATCCCAGACCCAGTCCCCCCACCCAGGGAGTGGGTCAGCTGGAAACCCTGCAGGCAGTCACAGCTCTCAGCCTCCTTTCTCACAACATCCAGCACCGAGTCCACCAGCTCCGCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:137242544|137242722 hsa-miR-134-5p 0 0 1
chr9:137242544|137242722 hsa-miR-134-3p 0 0 1
chr9:137242544|137242722 hsa-miR-539-5p 0 0 1
chr9:137242544|137242722 hsa-miR-539-3p 0 0 1
chr9:137242544|137242722 hsa-miR-545-5p 0 0 1
chr9:137242544|137242722 hsa-miR-545-3p 0 0 1
chr9:137242544|137242722 hsa-miR-765 0 0 1
chr9:137242544|137242722 hsa-miR-1205 0 1 1
chr9:137242544|137242722 hsa-miR-1287-5p 0 0 1
chr9:137242544|137242722 hsa-miR-1287-3p 0 0 1
chr9:137242544|137242722 hsa-miR-1293 0 0 1
chr9:137242544|137242722 hsa-miR-1250-5p 0 0 1
chr9:137242544|137242722 hsa-miR-1250-3p 0 0 1
chr9:137242544|137242722 hsa-miR-1324 0 1 1
chr9:137242544|137242722 hsa-miR-485-5p 0 1 1
chr9:137242544|137242722 hsa-miR-193a-5p 0 0 1
chr9:137242544|137242722 hsa-miR-1225-5p 0 0 1
chr9:137242544|137242722 hsa-miR-138 0 0 1
chr9:137242544|137242722 hsa-miR-663a 1 0 0
chr9:137242544|137242722 hsa-miR-658 1 0 0
chr9:137242544|137242722 hsa-miR-762 1 0 0
chr9:137242544|137242722 hsa-miR-3138 1 0 0
chr9:137242544|137242722 hsa-miR-3154 1 1 0
chr9:137242544|137242722 hsa-miR-4298 1 0 0
chr9:137242544|137242722 hsa-miR-4322 1 0 0
chr9:137242544|137242722 hsa-miR-378h 0 1 0
chr9:137242544|137242722 hsa-miR-3135b 1 0 0
chr9:137242544|137242722 hsa-miR-4478 0 1 0
chr9:137242544|137242722 hsa-miR-4498 1 0 0
chr9:137242544|137242722 hsa-miR-4507 1 0 0
chr9:137242544|137242722 hsa-miR-1587 1 0 0
chr9:137242544|137242722 hsa-miR-4656 1 1 0
chr9:137242544|137242722 hsa-miR-4663 1 0 0
chr9:137242544|137242722 hsa-miR-4675 1 1 0
chr9:137242544|137242722 hsa-miR-4739 1 1 0
chr9:137242544|137242722 hsa-miR-4741 1 0 0
chr9:137242544|137242722 hsa-miR-5090 1 0 0
chr9:137242544|137242722 hsa-miR-6085 1 0 0
chr9:137242544|137242722 hsa-miR-6132 1 0 0
chr9:137242544|137242722 hsa-miR-8088 1 0 0
chr9:137242544|137242722 hsa-miR-12115 1 0 0
chr9:137242544|137242722 hsa-miR-138-5p 0 1 0
chr9:137242544|137242722 hsa-miR-6894-5p 1 0 0
chr9:137242544|137242722 hsa-miR-4687-3p 1 0 0
chr9:137242544|137242722 hsa-miR-8071 1 1 0
chr9:137242544|137242722 hsa-miR-6880-5p 1 0 0
chr9:137242544|137242722 hsa-miR-4695-5p 1 1 0
chr9:137242544|137242722 hsa-miR-6741-5p 1 0 0
chr9:137242544|137242722 hsa-miR-6776-5p 0 1 0
chr9:137242544|137242722 hsa-miR-6748-5p 1 1 0
chr9:137242544|137242722 hsa-miR-6772-5p 1 0 0
chr9:137242544|137242722 hsa-miR-1226-5p 1 0 0
chr9:137242544|137242722 hsa-miR-4800-5p 1 0 0
chr9:137242544|137242722 hsa-miR-7846-3p 1 0 0
chr9:137242544|137242722 hsa-miR-4652-5p 0 1 0
chr9:137242544|137242722 hsa-miR-744-5p 1 0 0
chr9:137242544|137242722 hsa-miR-4750-3p 0 1 0
chr9:137242544|137242722 hsa-miR-4524b-3p 0 1 0
chr9:137242544|137242722 hsa-miR-6769b-5p 1 0 0
chr9:137242544|137242722 hsa-miR-5001-5p 1 0 0
chr9:137242544|137242722 hsa-miR-6726-5p 1 1 0
chr9:137242544|137242722 hsa-miR-6754-5p 1 0 0
chr9:137242544|137242722 hsa-miR-6756-5p 1 1 0
chr9:137242544|137242722 hsa-miR-6813-5p 1 0 0
chr9:137242544|137242722 hsa-miR-6851-5p 1 0 0
chr9:137242544|137242722 hsa-miR-10401-5p 1 0 0
chr9:137242544|137242722 hsa-miR-6779-5p 1 0 0
chr9:137242544|137242722 hsa-miR-3620-5p 1 0 0
chr9:137242544|137242722 hsa-miR-10396a-5p 1 0 0
chr9:137242544|137242722 hsa-miR-10396b-5p 1 0 0
chr9:137242544|137242722 hsa-miR-10526-3p 1 1 0
chr9:137242544|137242722 hsa-miR-6795-5p 0 1 0
chr9:137242544|137242722 hsa-miR-6846-5p 1 0 0
chr9:137242544|137242722 hsa-miR-6848-5p 1 1 0
chr9:137242544|137242722 hsa-miR-6858-5p 1 0 0
chr9:137242544|137242722 hsa-miR-6887-5p 0 1 0
chr9:137242544|137242722 hsa-miR-939-5p 1 0 0
chr9:137242544|137242722 hsa-miR-4769-5p 1 0 0
chr9:137242544|137242722 hsa-miR-6856-5p 1 1 0
chr9:137242544|137242722 hsa-miR-6891-5p 0 1 0
chr9:137242544|137242722 hsa-miR-6791-5p 0 1 0
chr9:137242544|137242722 hsa-miR-7114-3p 0 1 0
chr9:137242544|137242722 hsa-miR-6884-5p 1 1 0
chr9:137242544|137242722 hsa-miR-10394-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:137242544|137242722
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence METLQAVTALSLLSHNIQHRVHQLR
Nucleotide Sequence CTGGAAACCCTGCAGGCAGTCACAGCTCTCAGCCTCCTTTCTCACAACATCCAGCACCGAGTCCACCAGCTCCGC
CircID chr9:137242544|137242722
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MILSGYSSRILLMRRVPIPDPVPPPREWVSWKPCRQSQLSASFLTTSSTESTSSA
Nucleotide Sequence ATGATCCTGTCTGGGTACTCCTCCCGGATCTTGCTGATGAGGAGGGTACCCATCCCAGACCCAGTCCCCCCACCCAGGGAGTGGGTCAGCTGGAAACCCTGCAGGCAGTCACAGCTCTCAGCCTCCTTTCTCACAACATCCAGCACCGAGTCCACCAGCTCCGCG
CircID chr9:137242544|137242722
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MPAGFPADPLPGWGDWVWDGYPPHQQDPGGVPRQDHEHV
Nucleotide Sequence CTGCCTGCAGGGTTTCCAGCTGACCCACTCCCTGGGTGGGGGGACTGGGTCTGGGATGGGTACCCTCCTCATCAGCAAGATCCGGGAGGAGTACCCAGACAGGATCATGAACACGTTTAG
CircID chr9:137242544|137242722
ORF Type ORF4
Protein Length 57
Nucleotide Length 171
Protein Sequence MVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFS
Nucleotide Sequence CTGGTGGACTCGGTGCTGGATGTTGTGAGAAAGGAGGCTGAGAGCTGTGACTGCCTGCAGGGTTTCCAGCTGACCCACTCCCTGGGTGGGGGGACTGGGTCTGGGATGGGTACCCTCCTCATCAGCAAGATCCGGGAGGAGTACCCAGACAGGATCATGAACACGTTTAGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab