CircRNA Information

General Information
circRNA Basic Information
CircID chr9:137242714|137242890
Strand -
CircType exon
Host Gene ENSG00000188229.5;
Algorism CIRI2;
Sequence ACGTTTAGTGTGGTGCCTTCGCCCAAAGTGTCAGACACAGTGGTGGAGCCCTACAACGCCACCCTCTCAGTCCACCAGCTCGTAGAAAACACAGACGAGACCTACTGCATTGATAACGAAGCTCTCTACGACATTTGCTTCAGAACCCTAAAGCTGACCACGCCCACCTATGGTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:137242714|137242890 hsa-miR-506-5p 0 0 1
chr9:137242714|137242890 hsa-miR-506-3p 0 0 1
chr9:137242714|137242890 hsa-miR-585-5p 0 0 1
chr9:137242714|137242890 hsa-miR-585-3p 0 0 1
chr9:137242714|137242890 hsa-miR-892a 0 1 1
chr9:137242714|137242890 hsa-miR-541-5p 0 0 1
chr9:137242714|137242890 hsa-miR-541-3p 0 0 1
chr9:137242714|137242890 hsa-miR-1288-5p 0 0 1
chr9:137242714|137242890 hsa-miR-1288-3p 0 0 1
chr9:137242714|137242890 hsa-miR-296-3p 0 0 1
chr9:137242714|137242890 hsa-miR-654-5p 0 0 1
chr9:137242714|137242890 hsa-miR-1269 0 0 1
chr9:137242714|137242890 hsa-miR-138 0 0 1
chr9:137242714|137242890 hsa-miR-124 0 0 1
chr9:137242714|137242890 hsa-miR-1268 0 0 1
chr9:137242714|137242890 hsa-miR-608 1 1 0
chr9:137242714|137242890 hsa-miR-1268a 1 1 0
chr9:137242714|137242890 hsa-miR-1269a 1 1 0
chr9:137242714|137242890 hsa-miR-2861 1 0 0
chr9:137242714|137242890 hsa-miR-3138 1 0 0
chr9:137242714|137242890 hsa-miR-3170 1 1 0
chr9:137242714|137242890 hsa-miR-4299 1 0 0
chr9:137242714|137242890 hsa-miR-4322 1 0 0
chr9:137242714|137242890 hsa-miR-1268b 1 1 0
chr9:137242714|137242890 hsa-miR-3135b 1 0 0
chr9:137242714|137242890 hsa-miR-4463 1 0 0
chr9:137242714|137242890 hsa-miR-3689c 1 0 0
chr9:137242714|137242890 hsa-miR-4487 1 1 0
chr9:137242714|137242890 hsa-miR-4499 1 0 0
chr9:137242714|137242890 hsa-miR-4513 1 0 0
chr9:137242714|137242890 hsa-miR-4515 1 0 0
chr9:137242714|137242890 hsa-miR-1269b 1 0 0
chr9:137242714|137242890 hsa-miR-4523 1 0 0
chr9:137242714|137242890 hsa-miR-1587 1 0 0
chr9:137242714|137242890 hsa-miR-4651 1 0 0
chr9:137242714|137242890 hsa-miR-4656 1 0 0
chr9:137242714|137242890 hsa-miR-5787 1 0 0
chr9:137242714|137242890 hsa-miR-8077 1 0 0
chr9:137242714|137242890 hsa-miR-12119 1 0 0
chr9:137242714|137242890 hsa-miR-6747-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6765-5p 1 0 0
chr9:137242714|137242890 hsa-miR-4687-3p 1 0 0
chr9:137242714|137242890 hsa-miR-8071 1 1 0
chr9:137242714|137242890 hsa-miR-3192-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6880-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6759-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6742-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6772-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6732-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6805-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6782-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6821-5p 1 0 0
chr9:137242714|137242890 hsa-miR-1228-5p 1 0 0
chr9:137242714|137242890 hsa-miR-3677-3p 1 0 0
chr9:137242714|137242890 hsa-miR-4787-5p 1 0 0
chr9:137242714|137242890 hsa-miR-149-3p 1 0 0
chr9:137242714|137242890 hsa-miR-6802-5p 1 0 0
chr9:137242714|137242890 hsa-miR-4740-5p 1 0 0
chr9:137242714|137242890 hsa-miR-4800-5p 1 0 0
chr9:137242714|137242890 hsa-miR-135b-3p 0 1 0
chr9:137242714|137242890 hsa-miR-3158-3p 0 1 0
chr9:137242714|137242890 hsa-miR-605-3p 0 1 0
chr9:137242714|137242890 hsa-miR-6761-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6857-3p 1 0 0
chr9:137242714|137242890 hsa-miR-888-3p 1 0 0
chr9:137242714|137242890 hsa-miR-124-3p 0 1 0
chr9:137242714|137242890 hsa-miR-10400-5p 1 0 0
chr9:137242714|137242890 hsa-miR-1233-5p 1 0 0
chr9:137242714|137242890 hsa-miR-3689b-3p 1 0 0
chr9:137242714|137242890 hsa-miR-6769b-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6812-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6726-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6752-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6754-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6756-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6769a-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6803-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6842-5p 1 0 0
chr9:137242714|137242890 hsa-miR-7110-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6751-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6779-5p 1 0 0
chr9:137242714|137242890 hsa-miR-3620-5p 1 0 0
chr9:137242714|137242890 hsa-miR-4649-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6729-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6846-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6848-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6858-5p 1 0 0
chr9:137242714|137242890 hsa-miR-1238-5p 1 0 0
chr9:137242714|137242890 hsa-miR-4758-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6856-5p 1 0 0
chr9:137242714|137242890 hsa-miR-4665-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6736-5p 1 1 0
chr9:137242714|137242890 hsa-miR-6785-5p 1 0 0
chr9:137242714|137242890 hsa-miR-6790-5p 1 0 0
chr9:137242714|137242890 hsa-miR-3529-5p 1 0 0
chr9:137242714|137242890 hsa-miR-9851-3p 0 1 0
chr9:137242714|137242890 hsa-miR-10527-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:137242714|137242890
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MCFLRAGGLRGWRCRAPPLCLTLWAKAPH
Nucleotide Sequence CTGTGTTTTCTACGAGCTGGTGGACTGAGAGGGTGGCGTTGTAGGGCTCCACCACTGTGTCTGACACTTTGGGCGAAGGCACCACACTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab