CircRNA Information

General Information
circRNA Basic Information
CircID chr9:137265968|137266147
Strand +
CircType exon
Host Gene ENSG00000188986.4;
Algorism CIRI2;
Sequence CTGGGCCACTGCAGTCCACATCCCCGACCACCAGAGCAGCCAGCAGGGCGGCCACAGGGCCCCAACAGCTGCCTCCACCTGGCCGCTGCTGTCCACACCCTGACCACCCAGAGCAGCCAGCGGAGTGGCCGCATGGCCCCGACAGCTGCTGGCCAAGCCCACACTCACCCTGGGCAGTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:137265968|137266147 hsa-miR-370-5p 0 0 1
chr9:137265968|137266147 hsa-miR-370-3p 0 0 1
chr9:137265968|137266147 hsa-miR-326 0 0 1
chr9:137265968|137266147 hsa-miR-503-5p 0 0 1
chr9:137265968|137266147 hsa-miR-503-3p 0 0 1
chr9:137265968|137266147 hsa-miR-588 0 0 1
chr9:137265968|137266147 hsa-miR-604 0 0 1
chr9:137265968|137266147 hsa-miR-646 0 0 1
chr9:137265968|137266147 hsa-miR-647 0 0 1
chr9:137265968|137266147 hsa-miR-650 0 1 1
chr9:137265968|137266147 hsa-miR-663b 0 0 1
chr9:137265968|137266147 hsa-miR-1291 0 0 1
chr9:137265968|137266147 hsa-miR-1293 1 1 1
chr9:137265968|137266147 hsa-miR-1288-5p 0 0 1
chr9:137265968|137266147 hsa-miR-1288-3p 0 0 1
chr9:137265968|137266147 hsa-miR-1827 0 0 1
chr9:137265968|137266147 hsa-miR-542-5p 0 0 1
chr9:137265968|137266147 hsa-miR-146b-3p 0 1 1
chr9:137265968|137266147 hsa-miR-574-5p 0 1 1
chr9:137265968|137266147 hsa-miR-876-3p 0 0 1
chr9:137265968|137266147 hsa-miR-330-5p 0 0 1
chr9:137265968|137266147 hsa-miR-509-3-5p 0 0 1
chr9:137265968|137266147 hsa-miR-509-5p 0 0 1
chr9:137265968|137266147 hsa-miR-323-5p 0 0 1
chr9:137265968|137266147 hsa-miR-1269 0 0 1
chr9:137265968|137266147 hsa-miR-608 1 0 0
chr9:137265968|137266147 hsa-miR-637 1 0 0
chr9:137265968|137266147 hsa-miR-762 1 0 0
chr9:137265968|137266147 hsa-miR-760 1 0 0
chr9:137265968|137266147 hsa-miR-1202 0 1 0
chr9:137265968|137266147 hsa-miR-3138 1 1 0
chr9:137265968|137266147 hsa-miR-4322 0 1 0
chr9:137265968|137266147 hsa-miR-4265 0 1 0
chr9:137265968|137266147 hsa-miR-3911 1 1 0
chr9:137265968|137266147 hsa-miR-4418 0 1 0
chr9:137265968|137266147 hsa-miR-4450 1 0 0
chr9:137265968|137266147 hsa-miR-4483 0 1 0
chr9:137265968|137266147 hsa-miR-4491 0 1 0
chr9:137265968|137266147 hsa-miR-4525 1 0 0
chr9:137265968|137266147 hsa-miR-3960 1 0 0
chr9:137265968|137266147 hsa-miR-4657 0 1 0
chr9:137265968|137266147 hsa-miR-4658 0 1 0
chr9:137265968|137266147 hsa-miR-4660 1 0 0
chr9:137265968|137266147 hsa-miR-4686 1 0 0
chr9:137265968|137266147 hsa-miR-4734 1 0 0
chr9:137265968|137266147 hsa-miR-8072 1 0 0
chr9:137265968|137266147 hsa-miR-12114 0 1 0
chr9:137265968|137266147 hsa-miR-4435 0 1 0
chr9:137265968|137266147 hsa-miR-92a-1-5p 1 0 0
chr9:137265968|137266147 hsa-miR-7155-5p 1 0 0
chr9:137265968|137266147 hsa-miR-323a-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6747-5p 1 1 0
chr9:137265968|137266147 hsa-miR-6861-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6857-5p 1 0 0
chr9:137265968|137266147 hsa-miR-4687-3p 1 0 0
chr9:137265968|137266147 hsa-miR-6799-5p 1 0 0
chr9:137265968|137266147 hsa-miR-3692-5p 1 0 0
chr9:137265968|137266147 hsa-miR-8071 0 1 0
chr9:137265968|137266147 hsa-miR-5187-5p 1 0 0
chr9:137265968|137266147 hsa-miR-1227-5p 0 1 0
chr9:137265968|137266147 hsa-miR-6089 1 0 0
chr9:137265968|137266147 hsa-miR-3192-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6880-5p 1 1 0
chr9:137265968|137266147 hsa-miR-3064-5p 1 1 0
chr9:137265968|137266147 hsa-miR-3677-5p 1 1 0
chr9:137265968|137266147 hsa-miR-6741-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6762-3p 1 1 0
chr9:137265968|137266147 hsa-miR-6727-5p 1 1 0
chr9:137265968|137266147 hsa-miR-6842-3p 1 0 0
chr9:137265968|137266147 hsa-miR-3187-3p 1 0 0
chr9:137265968|137266147 hsa-miR-8069 1 0 0
chr9:137265968|137266147 hsa-miR-5589-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6776-5p 1 1 0
chr9:137265968|137266147 hsa-miR-7108-5p 0 1 0
chr9:137265968|137266147 hsa-miR-3663-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6748-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6732-5p 1 0 0
chr9:137265968|137266147 hsa-miR-3190-3p 1 0 0
chr9:137265968|137266147 hsa-miR-4793-3p 1 0 0
chr9:137265968|137266147 hsa-miR-6728-3p 0 1 0
chr9:137265968|137266147 hsa-miR-6815-3p 1 0 0
chr9:137265968|137266147 hsa-miR-1226-5p 1 0 0
chr9:137265968|137266147 hsa-miR-4640-5p 1 1 0
chr9:137265968|137266147 hsa-miR-4764-5p 0 1 0
chr9:137265968|137266147 hsa-miR-4787-5p 1 0 0
chr9:137265968|137266147 hsa-miR-4715-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6743-3p 0 1 0
chr9:137265968|137266147 hsa-miR-4632-3p 1 1 0
chr9:137265968|137266147 hsa-miR-6508-3p 0 1 0
chr9:137265968|137266147 hsa-miR-4529-3p 0 1 0
chr9:137265968|137266147 hsa-miR-1306-3p 1 0 0
chr9:137265968|137266147 hsa-miR-3173-5p 0 1 0
chr9:137265968|137266147 hsa-miR-10400-5p 1 0 0
chr9:137265968|137266147 hsa-miR-1273h-5p 1 0 0
chr9:137265968|137266147 hsa-miR-4763-3p 1 0 0
chr9:137265968|137266147 hsa-miR-6769b-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6787-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6737-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6752-5p 1 1 0
chr9:137265968|137266147 hsa-miR-6756-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6819-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6851-5p 1 0 0
chr9:137265968|137266147 hsa-miR-7107-5p 1 0 0
chr9:137265968|137266147 hsa-miR-7110-5p 1 0 0
chr9:137265968|137266147 hsa-miR-10401-5p 0 1 0
chr9:137265968|137266147 hsa-miR-3620-5p 1 0 0
chr9:137265968|137266147 hsa-miR-328-5p 1 0 0
chr9:137265968|137266147 hsa-miR-4632-5p 1 0 0
chr9:137265968|137266147 hsa-miR-4685-5p 1 0 0
chr9:137265968|137266147 hsa-miR-4701-3p 1 0 0
chr9:137265968|137266147 hsa-miR-6777-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6889-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6799-3p 0 1 0
chr9:137265968|137266147 hsa-miR-4700-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6790-5p 0 1 0
chr9:137265968|137266147 hsa-miR-6762-5p 0 1 0
chr9:137265968|137266147 hsa-miR-6893-3p 0 1 0
chr9:137265968|137266147 hsa-miR-9851-5p 1 0 0
chr9:137265968|137266147 hsa-miR-6775-3p 0 1 0
chr9:137265968|137266147 hsa-miR-3085-3p 1 1 0
chr9:137265968|137266147 hsa-miR-6504-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:137265968|137266147
ORF Type ORF1
Protein Length 60
Nucleotide Length 180
Protein Sequence LGHCSPHPRPPEQPAGRPQGPNSCLHLAAAVHTLTTQSSQRSGRMAPTAAGQAHTHPGQC
Nucleotide Sequence CTGGGCCACTGCAGTCCACATCCCCGACCACCAGAGCAGCCAGCAGGGCGGCCACAGGGCCCCAACAGCTGCCTCCACCTGGCCGCTGCTGTCCACACCCTGACCACCCAGAGCAGCCAGCGGAGTGGCCGCATGGCCCCGACAGCTGCTGGCCAAGCCCACACTCACCCTGGGCAGTGT
CircID chr9:137265968|137266147
ORF Type ORF2
Protein Length 57
Nucleotide Length 171
Protein Sequence MQSTSPTTRAASRAATGPQQLPPPGRCCPHPDHPEQPAEWPHGPDSCWPSPHSPWAV
Nucleotide Sequence CTGCAGTCCACATCCCCGACCACCAGAGCAGCCAGCAGGGCGGCCACAGGGCCCCAACAGCTGCCTCCACCTGGCCGCTGCTGTCCACACCCTGACCACCCAGAGCAGCCAGCGGAGTGGCCGCATGGCCCCGACAGCTGCTGGCCAAGCCCACACTCACCCTGGGCAGTG
CircID chr9:137265968|137266147
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence MPRVSVGLASSCRGHAATPLAALGGQGVDSSGQVEAAVGALWPPCWLLWWSGMWTAVAQ
Nucleotide Sequence CTGCCCAGGGTGAGTGTGGGCTTGGCCAGCAGCTGTCGGGGCCATGCGGCCACTCCGCTGGCTGCTCTGGGTGGTCAGGGTGTGGACAGCAGCGGCCAGGTGGAGGCAGCTGTTGGGGCCCTGTGGCCGCCCTGCTGGCTGCTCTGGTGGTCGGGGATGTGGACTGCAGTGGCCCAG
CircID chr9:137265968|137266147
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MRPLRWLLWVVRVWTAAARWRQLLGPCGRPAGCSGGRGCGLQWP
Nucleotide Sequence ATGCGGCCACTCCGCTGGCTGCTCTGGGTGGTCAGGGTGTGGACAGCAGCGGCCAGGTGGAGGCAGCTGTTGGGGCCCTGTGGCCGCCCTGCTGGCTGCTCTGGTGGTCGGGGATGTGGACTGCAGTGGCCC
CircID chr9:137265968|137266147
ORF Type ORF5
Protein Length 48
Nucleotide Length 144
Protein Sequence MSGPCGHSAGCSGWSGCGQQRPGGGSCWGPVAALLAALVVGDVDCSGP
Nucleotide Sequence CTGTCGGGGCCATGCGGCCACTCCGCTGGCTGCTCTGGGTGGTCAGGGTGTGGACAGCAGCGGCCAGGTGGAGGCAGCTGTTGGGGCCCTGTGGCCGCCCTGCTGGCTGCTCTGGTGGTCGGGGATGTGGACTGCAGTGGCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab